RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 CLTCQ00610 1675 aaKnown RBP14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 SPDYE4A6NLX3 237 aa14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 IPO8O15397 1037 aaKnown RBP14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 ARHGAP45Q92619 1136 aa14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 GDPD2Q9HCC8 539 aa14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 CABP2Q9NPB3 220 aa14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 PIK3C2BO00750 1634 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 FYB1O15117 783 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 IGSF3O75054 1194 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 ZNF853P0CG23 659 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 PALD1Q9ULE6 856 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 SPAG9O60271 1321 aaKnown RBP14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 LMTK2Q8IWU2 1503 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 TMX3Q96JJ7 454 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 TMEM51Q9NW97 253 aa14.29□□□□□ -0.12
SMARCA1-201ENST00000371121 CUL4AQ13619 759 aa14.28□□□□□ -0.12
SMARCA1-201ENST00000371121 PRIMPOLQ96LW4 560 aa14.28□□□□□ -0.12
SMARCA1-201ENST00000371121 KRT24Q2M2I5 525 aa14.28□□□□□ -0.12
SMARCA1-201ENST00000371121 USP25Q9UHP3 1055 aa14.28□□□□□ -0.12
SMARCA1-201ENST00000371121 U2AF2P26368 475 aaKnown RBP eCLIP14.27□□□□□ -0.136e-7■■■□□ 15.7
SMARCA1-201ENST00000371121 C8orf58Q8NAV2 365 aa14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 FUCA2Q9BTY2 467 aa14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 GTPBP4Q9BZE4 634 aaKnown RBP14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 TSPY26PQ9H489 355 aa14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 PYCARDQ9ULZ3 195 aa14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 ABCC3O15438 1527 aa14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 NEXMIFQ5QGS0 1516 aa14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 RPAP1Q9BWH6 1393 aaPredicted RBP14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 CTIFO43310 598 aaKnown RBP14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 MBIPQ9NS73 344 aa14.27□□□□□ -0.13
SMARCA1-201ENST00000371121 ZBTB22O15209 634 aa14.26□□□□□ -0.13
SMARCA1-201ENST00000371121 IL25Q9H293 177 aa14.26□□□□□ -0.13
SMARCA1-201ENST00000371121 ELL2O00472 640 aaPredicted RBP14.26□□□□□ -0.13
SMARCA1-201ENST00000371121 RTL1A6NKG5 1358 aa14.25□□□□□ -0.13
SMARCA1-201ENST00000371121 ARAP3Q8WWN8 1544 aa14.25□□□□□ -0.13
SMARCA1-201ENST00000371121 KIF20AO95235 890 aa14.25□□□□□ -0.13
SMARCA1-201ENST00000371121 NPATQ14207 1427 aa14.25□□□□□ -0.13
SMARCA1-201ENST00000371121 RIOK3O14730 519 aaKnown RBP14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 KIF3BO15066 747 aa14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 ADCY5O95622 1261 aa14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 USP48Q86UV5 1035 aa14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 KIAA1524Q8TCG1 905 aa14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 EFCAB2Q5VUJ9 269 aa14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 MYO5BQ9ULV0 1848 aa14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 SALL3Q9BXA9 1300 aa14.24□□□□□ -0.13
SMARCA1-201ENST00000371121 INTS3Q68E01 1043 aaKnown RBP14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 PTPRMP28827 1452 aa14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 FRMPD1Q5SYB0 1578 aa14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 CEP85Q6P2H3 762 aa14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 MBD3O95983 291 aa14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 FOXD4L6Q3SYB3 417 aaPredicted RBP14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 FOXD4L3Q6VB84 417 aaPredicted RBP14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 PUS7Q96PZ0 661 aaKnown RBP14.23□□□□□ -0.13
SMARCA1-201ENST00000371121 KIF3AQ9Y496 699 aa14.22□□□□□ -0.13
SMARCA1-201ENST00000371121 HCLS1P14317 486 aaPredicted RBP14.22□□□□□ -0.13
SMARCA1-201ENST00000371121 PRKAR2BP31323 418 aa14.22□□□□□ -0.13
SMARCA1-201ENST00000371121 ANKRD44Q8N8A2 993 aa14.22□□□□□ -0.13
SMARCA1-201ENST00000371121 IL17RAQ96F46 866 aa14.22□□□□□ -0.13
SMARCA1-201ENST00000371121 LETM1O95202 739 aaPredicted RBP14.21□□□□□ -0.13
SMARCA1-201ENST00000371121 NAA30Q147X3 362 aaPredicted RBP14.21□□□□□ -0.13
SMARCA1-201ENST00000371121 TSHZ3Q63HK5 1081 aa14.21□□□□□ -0.13
SMARCA1-201ENST00000371121 ST18O60284 1047 aa14.21□□□□□ -0.13
SMARCA1-201ENST00000371121 NCBP1Q09161 790 aaKnown RBP14.21□□□□□ -0.13
SMARCA1-201ENST00000371121 ZNF428Q96B54 188 aa14.21□□□□□ -0.13
SMARCA1-201ENST00000371121 MSH6P52701 1360 aa14.2□□□□□ -0.14
SMARCA1-201ENST00000371121 NEK4P51957 841 aa14.2□□□□□ -0.14
SMARCA1-201ENST00000371121 TMEM87AQ8NBN3 555 aa14.2□□□□□ -0.14
SMARCA1-201ENST00000371121 BBXQ8WY36 941 aaPredicted RBP14.2□□□□□ -0.14
SMARCA1-201ENST00000371121 KIF24Q5T7B8 1368 aa14.2□□□□□ -0.14
SMARCA1-201ENST00000371121 FAM83GA6ND36 823 aa14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 DIAPH1O60610 1272 aaKnown RBP14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 NUTM2DQ5VT03 806 aaPredicted RBP14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 EVC2Q86UK5 1308 aa14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 UHRF1BP1LA0JNW5 1464 aa14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 FCHSD2O94868 740 aa14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 KIAA0232Q92628 1395 aa14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 SRCIN1Q9C0H9 1055 aa14.19□□□□□ -0.14
SMARCA1-201ENST00000371121 KDM4AO75164 1064 aa14.18□□□□□ -0.14
SMARCA1-201ENST00000371121 DTNBO60941 627 aa14.18□□□□□ -0.14
SMARCA1-201ENST00000371121 PDCL2Q8N4E4 241 aa14.18□□□□□ -0.14
SMARCA1-201ENST00000371121 SLFN14P0C7P3 912 aa14.18□□□□□ -0.14
SMARCA1-201ENST00000371121 TWISTNBQ3B726 338 aaPredicted RBP14.18□□□□□ -0.14
SMARCA1-201ENST00000371121 OSBPL3Q9H4L5 887 aa14.18□□□□□ -0.14
SMARCA1-201ENST00000371121 POLKQ9UBT6 870 aa14.18□□□□□ -0.14
SMARCA1-201ENST00000371121 SETD1AO15047 1707 aaKnown RBP14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 ERC2O15083 957 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 PTMAP06454 111 aaKnown RBP14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 SAFB2Q14151 953 aaKnown RBP eCLIP14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 UVSSAQ2YD98 709 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 DNTTIP2Q5QJE6 756 aaKnown RBP14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 CTNNA3Q9UI47 895 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 CNPY2Q9Y2B0 182 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 HECW2Q9P2P5 1572 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 HMOX1P09601 288 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 IFT57Q9NWB7 429 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 NFE2L2Q16236 605 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 MEIS3Q99687 375 aa14.17□□□□□ -0.14
SMARCA1-201ENST00000371121 APBB1O00213 710 aa14.16□□□□□ -0.14
SMARCA1-201ENST00000371121 NOL8Q76FK4 1167 aaKnown RBP14.16□□□□□ -0.14
SMARCA1-201ENST00000371121 UNC5CLQ8IV45 518 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms