RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ANP32BQ92688 251 aaKnown RBP19.72■□□□□ 0.75
HMGA1-202ENST00000347617 ARXQ96QS3 562 aa19.72■□□□□ 0.75
HMGA1-202ENST00000347617 CHMP4BQ9H444 224 aaKnown RBP19.72■□□□□ 0.75
HMGA1-202ENST00000347617 SBNO1A3KN83 1393 aa19.72■□□□□ 0.75
HMGA1-202ENST00000347617 HSP90AB1P08238 724 aaKnown RBP19.72■□□□□ 0.75
HMGA1-202ENST00000347617 VSIG10Q8N0Z9 540 aa19.72■□□□□ 0.75
HMGA1-202ENST00000347617 TNPO1Q92973 898 aaKnown RBP19.72■□□□□ 0.75
HMGA1-202ENST00000347617 CFAP44Q96MT7 982 aa19.72■□□□□ 0.75
HMGA1-202ENST00000347617 PDCL3Q9H2J4 239 aa19.72■□□□□ 0.75
HMGA1-202ENST00000347617 RRP7AQ9Y3A4 280 aaKnown RBP19.72■□□□□ 0.75
HMGA1-202ENST00000347617 NLRP6P59044 892 aa19.71■□□□□ 0.75
HMGA1-202ENST00000347617 NEUROD2Q15784 382 aa19.71■□□□□ 0.75
HMGA1-202ENST00000347617 IPO8O15397 1037 aaKnown RBP19.7■□□□□ 0.74
HMGA1-202ENST00000347617 ESCO1Q5FWF5 840 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 TRIM35Q9UPQ4 493 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 TNNQ9UQP3 1299 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 FLT4P35916 1363 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 PRKAR2BP31323 418 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 HS1BP3Q53T59 392 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 ATF7IPQ6VMQ6 1270 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 LMTK3Q96Q04 1460 aa19.7■□□□□ 0.74
HMGA1-202ENST00000347617 RIPK4P57078 832 aa19.69■□□□□ 0.74
HMGA1-202ENST00000347617 PSME1Q06323 249 aa19.69■□□□□ 0.74
HMGA1-202ENST00000347617 ABTB2Q8N961 1025 aa19.69■□□□□ 0.74
HMGA1-202ENST00000347617 NUCB1Q02818 461 aa19.68■□□□□ 0.74
HMGA1-202ENST00000347617 EIF4A2Q14240 407 aaKnown RBP19.68■□□□□ 0.74
HMGA1-202ENST00000347617 NFE2L2Q16236 605 aa19.68■□□□□ 0.74
HMGA1-202ENST00000347617 BMP2KLQ5H9B9 411 aa19.68■□□□□ 0.74
HMGA1-202ENST00000347617 ZMYND15Q9H091 742 aa19.68■□□□□ 0.74
HMGA1-202ENST00000347617 SMC4Q9NTJ3 1288 aa19.68■□□□□ 0.74
HMGA1-202ENST00000347617 MAP3K19Q56UN5 1328 aa19.68■□□□□ 0.74
HMGA1-202ENST00000347617 KIF1AQ12756 1690 aa19.68■□□□□ 0.74
HMGA1-202ENST00000347617 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.67■□□□□ 0.74
HMGA1-202ENST00000347617 RBM33Q96EV2 1170 aaKnown RBP19.67■□□□□ 0.74
HMGA1-202ENST00000347617 MAP7D2Q96T17 732 aa19.67■□□□□ 0.74
HMGA1-202ENST00000347617 C1orf167Q5SNV9 1468 aa19.67■□□□□ 0.74
HMGA1-202ENST00000347617 CALD1Q05682 793 aaKnown RBP19.67■□□□□ 0.74
HMGA1-202ENST00000347617 ZSCAN30Q86W11 494 aa19.67■□□□□ 0.74
HMGA1-202ENST00000347617 BCL2L13Q9BXK5 485 aa19.67■□□□□ 0.74
HMGA1-202ENST00000347617 MST1RQ04912 1400 aa19.67■□□□□ 0.74
HMGA1-202ENST00000347617 PEAK1Q9H792 1746 aa19.67■□□□□ 0.74
HMGA1-202ENST00000347617 ERBB4Q15303 1308 aa19.66■□□□□ 0.74
HMGA1-202ENST00000347617 ZNF428Q96B54 188 aa19.66■□□□□ 0.74
HMGA1-202ENST00000347617 MARF1Q9Y4F3 1742 aaKnown RBP19.66■□□□□ 0.74
HMGA1-202ENST00000347617 TMEM94Q12767 1356 aa19.66■□□□□ 0.74
HMGA1-202ENST00000347617 TRIM27P14373 513 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 LMOD3Q0VAK6 560 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 ZBTB40Q9NUA8 1239 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 RGPD1P0DJD0 1748 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 RTL1A6NKG5 1358 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 ARHGEF10O15013 1369 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 ALDH1L2Q3SY69 923 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 ITPRIPQ8IWB1 547 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 KCNH5Q8NCM2 988 aa19.65■□□□□ 0.74
HMGA1-202ENST00000347617 K7ELQ4 463 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-202ENST00000347617 OFD1O75665 1012 aa19.64■□□□□ 0.73
HMGA1-202ENST00000347617 ATF3P18847 181 aa19.64■□□□□ 0.73
HMGA1-202ENST00000347617 HSPA2P54652 639 aa19.64■□□□□ 0.73
HMGA1-202ENST00000347617 KLHL40Q2TBA0 621 aa19.64■□□□□ 0.73
HMGA1-202ENST00000347617 HSP90AB2PQ58FF8 381 aa19.64■□□□□ 0.73
HMGA1-202ENST00000347617 CADPS2Q86UW7 1296 aa19.64■□□□□ 0.73
HMGA1-202ENST00000347617 STRCP1A6NGW2 1772 aa19.64■□□□□ 0.73
HMGA1-202ENST00000347617 HMOX1P09601 288 aa19.63■□□□□ 0.73
HMGA1-202ENST00000347617 GCC1Q96CN9 775 aa19.63■□□□□ 0.73
HMGA1-202ENST00000347617 AMPHP49418 695 aa19.62■□□□□ 0.73
HMGA1-202ENST00000347617 PHACTR3Q96KR7 559 aa19.62■□□□□ 0.73
HMGA1-202ENST00000347617 ORAI2Q96SN7 254 aa19.62■□□□□ 0.73
HMGA1-202ENST00000347617 STRCQ7RTU9 1775 aa19.62■□□□□ 0.73
HMGA1-202ENST00000347617 NASPP49321 788 aaPredicted RBP19.62■□□□□ 0.73
HMGA1-202ENST00000347617 BRPF1P55201 1214 aaPredicted RBP19.62■□□□□ 0.73
HMGA1-202ENST00000347617 GAS2L3Q86XJ1 694 aa19.62■□□□□ 0.73
HMGA1-202ENST00000347617 CHD1LQ86WJ1 897 aa19.61■□□□□ 0.73
HMGA1-202ENST00000347617 KDRP35968 1356 aa19.61■□□□□ 0.73
HMGA1-202ENST00000347617 MSNP26038 577 aaKnown RBP19.6■□□□□ 0.73
HMGA1-202ENST00000347617 EXOSC9Q06265 439 aaKnown RBP19.6■□□□□ 0.73
HMGA1-202ENST00000347617 SSH1Q8WYL5 1049 aa19.6■□□□□ 0.73
HMGA1-202ENST00000347617 HOXC9P31274 260 aa19.6■□□□□ 0.73
HMGA1-202ENST00000347617 ZNF445P59923 1031 aa19.6■□□□□ 0.73
HMGA1-202ENST00000347617 SULT6B1Q6IMI4 303 aa19.6■□□□□ 0.73
HMGA1-202ENST00000347617 PHRF1Q9P1Y6 1649 aaKnown RBP19.59■□□□□ 0.73
HMGA1-202ENST00000347617 IGSF1Q8N6C5 1336 aa19.59■□□□□ 0.73
HMGA1-202ENST00000347617 FOXO3O43524 673 aa19.59■□□□□ 0.73
HMGA1-202ENST00000347617 KIAA1211Q6ZU35 1233 aa19.58■□□□□ 0.73
HMGA1-202ENST00000347617 KRT28Q7Z3Y7 464 aa19.58■□□□□ 0.73
HMGA1-202ENST00000347617 MTERF4Q7Z6M4 381 aaKnown RBP19.58■□□□□ 0.73
HMGA1-202ENST00000347617 NFAT5O94916 1531 aa19.58■□□□□ 0.72
HMGA1-202ENST00000347617 MSH6P52701 1360 aa19.58■□□□□ 0.72
HMGA1-202ENST00000347617 TRPM3Q9HCF6 1732 aaPredicted RBP19.58■□□□□ 0.72
HMGA1-202ENST00000347617 NUCB2P80303 420 aa19.57■□□□□ 0.72
HMGA1-202ENST00000347617 IP6K1Q92551 441 aa19.57■□□□□ 0.72
HMGA1-202ENST00000347617 TMEM57Q8N5G2 664 aa19.57■□□□□ 0.72
HMGA1-202ENST00000347617 IFT57Q9NWB7 429 aa19.57■□□□□ 0.72
HMGA1-202ENST00000347617 NOB1Q9ULX3 412 aaKnown RBP19.57■□□□□ 0.72
HMGA1-202ENST00000347617 SLIT3O75094 1523 aa19.57■□□□□ 0.72
HMGA1-202ENST00000347617 MCM5P33992 734 aa19.56■□□□□ 0.72
HMGA1-202ENST00000347617 GNAI1P63096 354 aa19.56■□□□□ 0.72
HMGA1-202ENST00000347617 KIF2CQ99661 725 aa19.56■□□□□ 0.72
HMGA1-202ENST00000347617 ZNF853P0CG23 659 aa19.55■□□□□ 0.72
HMGA1-202ENST00000347617 SOX12O15370 315 aa19.55■□□□□ 0.72
HMGA1-202ENST00000347617 EYA1Q99502 592 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms