RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 OVOS2A0A0G2JMS6 1433 aa27.93■■■□□ 2.06
SMARCB1-202ENST00000344921 COL3A1P02461 1466 aaPredicted RBP27.93■■■□□ 2.06
SMARCB1-202ENST00000344921 NUDCQ9Y266 331 aa27.92■■■□□ 2.06
SMARCB1-202ENST00000344921 AEBP1Q8IUX7 1158 aa27.92■■■□□ 2.06
SMARCB1-202ENST00000344921 UPF1Q92900 1129 aaKnown RBP eCLIP27.91■■■□□ 2.068e-14■■■■□ 25.9
SMARCB1-202ENST00000344921 HMOX1P09601 288 aa27.9■■■□□ 2.06
SMARCB1-202ENST00000344921 RGPD1P0DJD0 1748 aa27.89■■■□□ 2.06
SMARCB1-202ENST00000344921 ANP32CO43423 234 aa27.89■■■□□ 2.05
SMARCB1-202ENST00000344921 SPG7Q9UQ90 795 aa27.87■■■□□ 2.05
SMARCB1-202ENST00000344921 PCDH11XQ9BZA7 1347 aa27.85■■■□□ 2.05
SMARCB1-202ENST00000344921 PCDH11YQ9BZA8 1340 aa27.85■■■□□ 2.05
SMARCB1-202ENST00000344921 SF3B2Q13435 895 aaKnown RBP27.85■■■□□ 2.05
SMARCB1-202ENST00000344921 KDRP35968 1356 aa27.85■■■□□ 2.05
SMARCB1-202ENST00000344921 TRIM37O94972 964 aa27.84■■■□□ 2.05
SMARCB1-202ENST00000344921 U2AF1L5P0DN76 240 aaPredicted RBP27.84■■■□□ 2.05
SMARCB1-202ENST00000344921 U2AF1Q01081 240 aaKnown RBP eCLIP27.84■■■□□ 2.05
SMARCB1-202ENST00000344921 CCDC125Q86Z20 511 aa27.83■■■□□ 2.05
SMARCB1-202ENST00000344921 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.83■■■□□ 2.05
SMARCB1-202ENST00000344921 PLEKHO1Q53GL0 409 aaPredicted RBP27.82■■■□□ 2.04
SMARCB1-202ENST00000344921 SHANK3Q9BYB0 1731 aa27.82■■■□□ 2.04
SMARCB1-202ENST00000344921 PKD1L3Q7Z443 1732 aa27.81■■■□□ 2.04
SMARCB1-202ENST00000344921 AMOTQ4VCS5 1084 aa27.8■■■□□ 2.04
SMARCB1-202ENST00000344921 ACSBG1Q96GR2 724 aa27.8■■■□□ 2.04
SMARCB1-202ENST00000344921 KAT6BQ8WYB5 2073 aa27.79■■■□□ 2.04
SMARCB1-202ENST00000344921 PLEKHG2Q9H7P9 1386 aa27.79■■■□□ 2.04
SMARCB1-202ENST00000344921 CYP27B1O15528 508 aa27.78■■■□□ 2.04
SMARCB1-202ENST00000344921 BCL9O00512 1426 aa27.77■■■□□ 2.04
SMARCB1-202ENST00000344921 IFNL2Q8IZJ0 200 aa27.77■■■□□ 2.04
SMARCB1-202ENST00000344921 ZNF530Q6P9A1 599 aaPredicted RBP27.76■■■□□ 2.03
SMARCB1-202ENST00000344921 SBF2Q86WG5 1849 aa27.76■■■□□ 2.03
SMARCB1-202ENST00000344921 SYTL4Q96C24 671 aaPredicted RBP27.75■■■□□ 2.03
SMARCB1-202ENST00000344921 PHKG2P15735 406 aa27.74■■■□□ 2.03
SMARCB1-202ENST00000344921 PRKAR2BP31323 418 aa27.74■■■□□ 2.03
SMARCB1-202ENST00000344921 C1orf141Q5JVX7 400 aa27.74■■■□□ 2.03
SMARCB1-202ENST00000344921 KCNQ2O43526 872 aa27.73■■■□□ 2.03
SMARCB1-202ENST00000344921 FCHSD2O94868 740 aa27.73■■■□□ 2.03
SMARCB1-202ENST00000344921 APBA3O96018 575 aa27.73■■■□□ 2.03
SMARCB1-202ENST00000344921 BCL11BQ9C0K0 894 aaPredicted RBP27.73■■■□□ 2.03
SMARCB1-202ENST00000344921 RSPH6AQ9H0K4 717 aa27.73■■■□□ 2.03
SMARCB1-202ENST00000344921 BAG6P46379 1132 aa27.72■■■□□ 2.03
SMARCB1-202ENST00000344921 WDR43Q15061 677 aaKnown RBP eCLIP27.7■■■□□ 2.03
SMARCB1-202ENST00000344921 PTF1AQ7RTS3 328 aa27.7■■■□□ 2.03
SMARCB1-202ENST00000344921 DEFB132Q7Z7B7 95 aa27.7■■■□□ 2.03
SMARCB1-202ENST00000344921 NEFMP07197 916 aa27.7■■■□□ 2.02
SMARCB1-202ENST00000344921 PRIM1P49642 420 aaKnown RBP27.7■■■□□ 2.02
SMARCB1-202ENST00000344921 TNS1Q9HBL0 1735 aaKnown RBP27.69■■■□□ 2.02
SMARCB1-202ENST00000344921 HSP90AB1P08238 724 aaKnown RBP27.69■■■□□ 2.02
SMARCB1-202ENST00000344921 MTHFSDQ2M296 383 aaKnown RBP27.69■■■□□ 2.02
SMARCB1-202ENST00000344921 DOT1LQ8TEK3 1739 aa27.69■■■□□ 2.02
SMARCB1-202ENST00000344921 NKX1-1Q15270 411 aaPredicted RBP27.68■■■□□ 2.02
SMARCB1-202ENST00000344921 NHSQ6T4R5 1651 aa27.68■■■□□ 2.02
SMARCB1-202ENST00000344921 PNNQ9H307 717 aaKnown RBP27.67■■■□□ 2.02
SMARCB1-202ENST00000344921 EN1Q05925 392 aaPredicted RBP27.67■■■□□ 2.02
SMARCB1-202ENST00000344921 AKAP4Q5JQC9 854 aa27.66■■■□□ 2.02
SMARCB1-202ENST00000344921 PHACTR3Q96KR7 559 aa27.66■■■□□ 2.02
SMARCB1-202ENST00000344921 GAS2L2Q8NHY3 880 aa27.65■■■□□ 2.02
SMARCB1-202ENST00000344921 DCAF5Q96JK2 942 aa27.64■■■□□ 2.02
SMARCB1-202ENST00000344921 CCDC184Q52MB2 194 aa27.64■■■□□ 2.01
SMARCB1-202ENST00000344921 MPRIPQ6WCQ1 1025 aa27.64■■■□□ 2.01
SMARCB1-202ENST00000344921 MRS2Q9HD23 443 aa27.64■■■□□ 2.01
SMARCB1-202ENST00000344921 MAPK8IP3Q9UPT6 1336 aa27.62■■■□□ 2.01
SMARCB1-202ENST00000344921 DIEXFQ68CQ4 756 aaKnown RBP27.61■■■□□ 2.01
SMARCB1-202ENST00000344921 BTAF1O14981 1849 aa27.6■■■□□ 2.01
SMARCB1-202ENST00000344921 TOGARAM1Q9Y4F4 1720 aa27.6■■■□□ 2.01
SMARCB1-202ENST00000344921 EZH2Q15910 746 aaKnown RBP27.6■■■□□ 2.01
SMARCB1-202ENST00000344921 ADAMTS8Q9UP79 889 aa27.6■■■□□ 2.01
SMARCB1-202ENST00000344921 TMOD3Q9NYL9 352 aa27.59■■■□□ 2.01
SMARCB1-202ENST00000344921 GNAT3A8MTJ3 354 aa27.58■■■□□ 2.01
SMARCB1-202ENST00000344921 PLSCR1O15162 318 aa27.58■■■□□ 2.01
SMARCB1-202ENST00000344921 PLEKHF1Q96S99 279 aa27.58■■■□□ 2.01
SMARCB1-202ENST00000344921 ERVV-2B6SEH9 535 aa27.58■■■□□ 2.01
SMARCB1-202ENST00000344921 CABP4P57796 275 aa27.58■■■□□ 2.01
SMARCB1-202ENST00000344921 ITGB4P16144 1822 aa27.57■■■□□ 2
SMARCB1-202ENST00000344921 KDM6AO15550 1401 aaPredicted RBP27.57■■■□□ 2
SMARCB1-202ENST00000344921 CAMKK2Q96RR4 588 aa27.57■■■□□ 2
SMARCB1-202ENST00000344921 CCDC146Q8IYE0 955 aa27.56■■■□□ 2
SMARCB1-202ENST00000344921 MAP3K5Q99683 1374 aa27.56■■■□□ 2
SMARCB1-202ENST00000344921 PIGBQ92521 554 aa27.55■■■□□ 2
SMARCB1-202ENST00000344921 LGR6Q9HBX8 967 aa27.55■■■□□ 2
SMARCB1-202ENST00000344921 RNMTO43148 476 aaKnown RBP27.54■■■□□ 2
SMARCB1-202ENST00000344921 RTF1Q92541 710 aaKnown RBP27.53■■■□□ 2
SMARCB1-202ENST00000344921 SCN11AQ9UI33 1791 aa27.53■■■□□ 2
SMARCB1-202ENST00000344921 NFATC2IPQ8NCF5 419 aa27.52■■■□□ 2
SMARCB1-202ENST00000344921 RUNDC1Q96C34 613 aa27.51■■□□□ 1.99
SMARCB1-202ENST00000344921 VIRMAQ69YN4 1812 aaKnown RBP27.51■■□□□ 1.99
SMARCB1-202ENST00000344921 TXNRD1Q16881 649 aa27.5■■□□□ 1.99
SMARCB1-202ENST00000344921 NFE2L2Q16236 605 aa27.5■■□□□ 1.99
SMARCB1-202ENST00000344921 PNISRQ8TF01 805 aaKnown RBP27.5■■□□□ 1.99
SMARCB1-202ENST00000344921 RGPD3A6NKT7 1758 aaPredicted RBP27.49■■□□□ 1.99
SMARCB1-202ENST00000344921 RGPD4Q7Z3J3 1758 aa27.49■■□□□ 1.99
SMARCB1-202ENST00000344921 SLC52A2Q9HAB3 445 aa27.49■■□□□ 1.99
SMARCB1-202ENST00000344921 IL17REQ8NFR9 667 aa27.48■■□□□ 1.99
SMARCB1-202ENST00000344921 SMARCC1Q92922 1105 aaPredicted RBP27.48■■□□□ 1.99
SMARCB1-202ENST00000344921 TEFQ10587 303 aa27.47■■□□□ 1.99
SMARCB1-202ENST00000344921 PROM2Q8N271 834 aa27.47■■□□□ 1.99
SMARCB1-202ENST00000344921 ASAP1Q9ULH1 1129 aa27.47■■□□□ 1.99
SMARCB1-202ENST00000344921 PALLDQ8WX93 1383 aa27.46■■□□□ 1.99
SMARCB1-202ENST00000344921 NEUROD2Q15784 382 aa27.46■■□□□ 1.99
SMARCB1-202ENST00000344921 MCM10Q7L590 875 aa27.46■■□□□ 1.99
SMARCB1-202ENST00000344921 HTATSF1O43719 755 aaKnown RBP27.45■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms