RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 SNX21Q969T3 373 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 BRPF3Q9ULD4 1205 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 DIP2AQ14689 1571 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 ATP10DQ9P241 1426 aa18.18■□□□□ 0.5
TDP2-201ENST00000341060 KDM4FA0A1W2PPD8 638 aa18.18■□□□□ 0.5
TDP2-201ENST00000341060 NUTM2FA1L443 756 aa18.18■□□□□ 0.5
TDP2-201ENST00000341060 ANKLE2Q86XL3 938 aa18.18■□□□□ 0.5
TDP2-201ENST00000341060 CRB1P82279 1406 aa18.18■□□□□ 0.5
TDP2-201ENST00000341060 MCM10Q7L590 875 aa18.17■□□□□ 0.5
TDP2-201ENST00000341060 ZNF142P52746 1687 aaPredicted RBP18.17■□□□□ 0.5
TDP2-201ENST00000341060 XRN1Q8IZH2 1706 aaKnown RBP18.16■□□□□ 0.5
TDP2-201ENST00000341060 PTPRCP08575 1304 aa18.16■□□□□ 0.5
TDP2-201ENST00000341060 KRT24Q2M2I5 525 aa18.16■□□□□ 0.5
TDP2-201ENST00000341060 FLT4P35916 1363 aa18.16■□□□□ 0.5
TDP2-201ENST00000341060 CACNA1FO60840 1977 aa18.16■□□□□ 0.5
TDP2-201ENST00000341060 TBC1D9Q6ZT07 1266 aa18.16■□□□□ 0.5
TDP2-201ENST00000341060 DCTPP1Q9H773 170 aa18.16■□□□□ 0.5
TDP2-201ENST00000341060 MARF1Q9Y4F3 1742 aaKnown RBP18.16■□□□□ 0.5
TDP2-201ENST00000341060 SBNO1A3KN83 1393 aa18.15■□□□□ 0.5
TDP2-201ENST00000341060 KDRP35968 1356 aa18.15■□□□□ 0.5
TDP2-201ENST00000341060 LRRC37A3O60309 1634 aa18.15■□□□□ 0.5
TDP2-201ENST00000341060 USP54Q70EL1 1684 aa18.15■□□□□ 0.5
TDP2-201ENST00000341060 MCM4P33991 863 aa18.14■□□□□ 0.5
TDP2-201ENST00000341060 KIF2CQ99661 725 aa18.14■□□□□ 0.5
TDP2-201ENST00000341060 MSH6P52701 1360 aa18.14■□□□□ 0.49
TDP2-201ENST00000341060 MAP3K19Q56UN5 1328 aa18.14■□□□□ 0.49
TDP2-201ENST00000341060 DDIT3P35638 169 aa18.14■□□□□ 0.49
TDP2-201ENST00000341060 AMOTL2Q9Y2J4 779 aa18.14■□□□□ 0.49
TDP2-201ENST00000341060 ANKRD44Q8N8A2 993 aa18.13■□□□□ 0.49
TDP2-201ENST00000341060 TBX22Q9Y458 520 aa18.13■□□□□ 0.49
TDP2-201ENST00000341060 RPAP2Q8IXW5 612 aaPredicted RBP18.13■□□□□ 0.49
TDP2-201ENST00000341060 FAM208AQ9UK61 1670 aaKnown RBP18.12■□□□□ 0.49
TDP2-201ENST00000341060 CDC45O75419 566 aa18.12■□□□□ 0.49
TDP2-201ENST00000341060 PLEKHM2Q8IWE5 1019 aa18.12■□□□□ 0.49
TDP2-201ENST00000341060 RTL1A6NKG5 1358 aa18.12■□□□□ 0.49
TDP2-201ENST00000341060 GSPT1P15170 499 aaKnown RBP18.11■□□□□ 0.49
TDP2-201ENST00000341060 SOX12O15370 315 aa18.11■□□□□ 0.49
TDP2-201ENST00000341060 N4BP2Q86UW6 1770 aaPredicted RBP18.11■□□□□ 0.49
TDP2-201ENST00000341060 CEP85Q6P2H3 762 aa18.1■□□□□ 0.49
TDP2-201ENST00000341060 IGSF1Q8N6C5 1336 aa18.1■□□□□ 0.49
TDP2-201ENST00000341060 EIF5BO60841 1220 aaKnown RBP18.1■□□□□ 0.49
TDP2-201ENST00000341060 MTHFSDQ2M296 383 aaKnown RBP18.1■□□□□ 0.49
TDP2-201ENST00000341060 TTC22Q5TAA0 569 aa18.08■□□□□ 0.49
TDP2-201ENST00000341060 RTF1Q92541 710 aaKnown RBP18.08■□□□□ 0.49
TDP2-201ENST00000341060 RTN4Q9NQC3 1192 aaKnown RBP18.08■□□□□ 0.49
TDP2-201ENST00000341060 CIZ1Q9ULV3 898 aaPredicted RBP18.08■□□□□ 0.49
TDP2-201ENST00000341060 ANKARQ7Z5J8 1434 aa18.08■□□□□ 0.48
TDP2-201ENST00000341060 SLC4A2P04920 1241 aa18.08■□□□□ 0.48
TDP2-201ENST00000341060 NGDNQ8NEJ9 315 aaKnown RBP18.08■□□□□ 0.48
TDP2-201ENST00000341060 FOXO3O43524 673 aa18.07■□□□□ 0.48
TDP2-201ENST00000341060 HSP90AB1P08238 724 aaKnown RBP18.07■□□□□ 0.48
TDP2-201ENST00000341060 HSPA2P54652 639 aa18.07■□□□□ 0.48
TDP2-201ENST00000341060 L1TD1Q5T7N2 865 aaKnown RBP18.07■□□□□ 0.48
TDP2-201ENST00000341060 GAS2L2Q8NHY3 880 aa18.07■□□□□ 0.48
TDP2-201ENST00000341060 MEIS3Q99687 375 aa18.07■□□□□ 0.48
TDP2-201ENST00000341060 TSPYL4Q9UJ04 414 aa18.07■□□□□ 0.48
TDP2-201ENST00000341060 TUBGCP6Q96RT7 1819 aa18.06■□□□□ 0.48
TDP2-201ENST00000341060 DDX11L8A8MPP1 907 aa18.06■□□□□ 0.48
TDP2-201ENST00000341060 EYA1Q99502 592 aa18.06■□□□□ 0.48
TDP2-201ENST00000341060 AMPHP49418 695 aa18.05■□□□□ 0.48
TDP2-201ENST00000341060 NWD1Q149M9 1564 aa18.05■□□□□ 0.48
TDP2-201ENST00000341060 LTN1O94822 1766 aa18.05■□□□□ 0.48
TDP2-201ENST00000341060 K7ELQ4 463 aaPredicted RBP18.05■□□□□ 0.48
TDP2-201ENST00000341060 CD2BP2O95400 341 aaKnown RBP18.05■□□□□ 0.48
TDP2-201ENST00000341060 KCNA6P17658 529 aa18.05■□□□□ 0.48
TDP2-201ENST00000341060 MIS18AQ9NYP9 233 aa18.05■□□□□ 0.48
TDP2-201ENST00000341060 HTATSF1O43719 755 aaKnown RBP18.04■□□□□ 0.48
TDP2-201ENST00000341060 NPHP4O75161 1426 aaPredicted RBP18.03■□□□□ 0.48
TDP2-201ENST00000341060 TRAK2O60296 914 aa18.03■□□□□ 0.48
TDP2-201ENST00000341060 CCT4P50991 539 aaKnown RBP18.03■□□□□ 0.48
TDP2-201ENST00000341060 C16orf71Q8IYS4 520 aaPredicted RBP18.03■□□□□ 0.48
TDP2-201ENST00000341060 RAB3GAP1Q15042 981 aa18.02■□□□□ 0.48
TDP2-201ENST00000341060 AK9Q5TCS8 1911 aa18.02■□□□□ 0.48
TDP2-201ENST00000341060 HMMRO75330 724 aa18.02■□□□□ 0.47
TDP2-201ENST00000341060 G2E3Q7L622 706 aa18.02■□□□□ 0.47
TDP2-201ENST00000341060 FSD2A1L4K1 749 aa18.01■□□□□ 0.47
TDP2-201ENST00000341060 OTUD7AQ8TE49 926 aaPredicted RBP18.01■□□□□ 0.47
TDP2-201ENST00000341060 TNPO1Q92973 898 aaKnown RBP18.01■□□□□ 0.47
TDP2-201ENST00000341060 RBM42Q9BTD8 480 aaKnown RBP18.01■□□□□ 0.47
TDP2-201ENST00000341060 NLRP6P59044 892 aa18.01■□□□□ 0.47
TDP2-201ENST00000341060 RBM33Q96EV2 1170 aaKnown RBP18.01■□□□□ 0.47
TDP2-201ENST00000341060 HSP90AA1P07900 732 aaKnown RBP18■□□□□ 0.47
TDP2-201ENST00000341060 HOXC9P31274 260 aa18■□□□□ 0.47
TDP2-201ENST00000341060 CHD2O14647 1828 aaKnown RBP18■□□□□ 0.47
TDP2-201ENST00000341060 SDSP20132 328 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 RABEP1Q15276 862 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 STK31Q9BXU1 1019 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 USP26Q9BXU7 913 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 GOLGA6L3A6NEY3 463 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 GNAT3A8MTJ3 354 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 F6X3S4 739 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 SMARCA5O60264 1052 aaPredicted RBP17.99■□□□□ 0.47
TDP2-201ENST00000341060 SLC4A10Q6U841 1118 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 GBP4Q96PP9 640 aa17.99■□□□□ 0.47
TDP2-201ENST00000341060 CASC1Q6TDU7 716 aa17.98■□□□□ 0.47
TDP2-201ENST00000341060 SOS1Q07889 1333 aaPredicted RBP17.98■□□□□ 0.47
TDP2-201ENST00000341060 MAP3K5Q99683 1374 aa17.98■□□□□ 0.47
TDP2-201ENST00000341060 GZF1Q9H116 711 aaPredicted RBP17.98■□□□□ 0.47
TDP2-201ENST00000341060 OSBPL3Q9H4L5 887 aa17.98■□□□□ 0.47
TDP2-201ENST00000341060 PXDNLA1KZ92 1463 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms