RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 RGPD1P0DJD0 1748 aa20.03■□□□□ 0.8
COPS3-201ENST00000268717 ZBTB7CA1YPR0 619 aa20.02■□□□□ 0.8
COPS3-201ENST00000268717 SOX12O15370 315 aa20.02■□□□□ 0.8
COPS3-201ENST00000268717 EVA1CP58658 441 aa20.02■□□□□ 0.8
COPS3-201ENST00000268717 FAM98CQ17RN3 349 aaKnown RBP20.02■□□□□ 0.8
COPS3-201ENST00000268717 SPATA31A1Q5TZJ5 1347 aa20.02■□□□□ 0.8
COPS3-201ENST00000268717 LTN1O94822 1766 aa20.02■□□□□ 0.8
COPS3-201ENST00000268717 NEUROD2Q15784 382 aa20.02■□□□□ 0.79
COPS3-201ENST00000268717 MYH16Q9H6N6 1097 aa20.02■□□□□ 0.79
COPS3-201ENST00000268717 THSD7AQ9UPZ6 1657 aa20.01■□□□□ 0.79
COPS3-201ENST00000268717 NFE2L2Q16236 605 aa20.01■□□□□ 0.79
COPS3-201ENST00000268717 PPP4R2Q9NY27 417 aa20.01■□□□□ 0.79
COPS3-201ENST00000268717 TRIM35Q9UPQ4 493 aa20.01■□□□□ 0.79
COPS3-201ENST00000268717 HSP90AB2PQ58FF8 381 aa20■□□□□ 0.79
COPS3-201ENST00000268717 LARP1Q6PKG0 1096 aaKnown RBP20■□□□□ 0.79
COPS3-201ENST00000268717 ABCC6O95255 1503 aa19.99■□□□□ 0.79
COPS3-201ENST00000268717 AMPHP49418 695 aa19.99■□□□□ 0.79
COPS3-201ENST00000268717 RIPK4P57078 832 aa19.99■□□□□ 0.79
COPS3-201ENST00000268717 IRX6P78412 446 aaPredicted RBP19.99■□□□□ 0.79
COPS3-201ENST00000268717 KDRP35968 1356 aa19.99■□□□□ 0.79
COPS3-201ENST00000268717 HMOX1P09601 288 aa19.98■□□□□ 0.79
COPS3-201ENST00000268717 AXIN2Q9Y2T1 843 aa19.98■□□□□ 0.79
COPS3-201ENST00000268717 A0A0G2JS52 829 aa19.98■□□□□ 0.79
COPS3-201ENST00000268717 CT47B1P0C2W7 299 aaPredicted RBP19.98■□□□□ 0.79
COPS3-201ENST00000268717 MYT1Q01538 1121 aa19.98■□□□□ 0.79
COPS3-201ENST00000268717 LMOD3Q0VAK6 560 aa19.98■□□□□ 0.79
COPS3-201ENST00000268717 HOXC9P31274 260 aa19.97■□□□□ 0.79
COPS3-201ENST00000268717 CALD1Q05682 793 aaKnown RBP19.97■□□□□ 0.79
COPS3-201ENST00000268717 PELP1Q8IZL8 1130 aaKnown RBP19.97■□□□□ 0.79
COPS3-201ENST00000268717 USP35Q9P2H5 1018 aa19.97■□□□□ 0.79
COPS3-201ENST00000268717 CRB1P82279 1406 aa19.97■□□□□ 0.79
COPS3-201ENST00000268717 IGSF1Q8N6C5 1336 aa19.96■□□□□ 0.79
COPS3-201ENST00000268717 KRT27Q7Z3Y8 459 aa19.95■□□□□ 0.78
COPS3-201ENST00000268717 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.95■□□□□ 0.78
COPS3-201ENST00000268717 PHACTR3Q96KR7 559 aa19.95■□□□□ 0.78
COPS3-201ENST00000268717 SULT6B1Q6IMI4 303 aa19.94■□□□□ 0.78
COPS3-201ENST00000268717 BARGINQ6ZT62 677 aa19.94■□□□□ 0.78
COPS3-201ENST00000268717 IP6K1Q92551 441 aa19.94■□□□□ 0.78
COPS3-201ENST00000268717 THRAP3Q9Y2W1 955 aaKnown RBP19.94■□□□□ 0.78
COPS3-201ENST00000268717 WDR17Q8IZU2 1322 aa19.93■□□□□ 0.78
COPS3-201ENST00000268717 WNK3Q9BYP7 1800 aa19.91■□□□□ 0.78
COPS3-201ENST00000268717 TOM1L2Q6ZVM7 507 aa19.91■□□□□ 0.78
COPS3-201ENST00000268717 PARP4Q9UKK3 1724 aaKnown RBP19.91■□□□□ 0.78
COPS3-201ENST00000268717 FANCIQ9NVI1 1328 aa19.9■□□□□ 0.78
COPS3-201ENST00000268717 AEBP1Q8IUX7 1158 aa19.9■□□□□ 0.78
COPS3-201ENST00000268717 EYA1Q99502 592 aa19.9■□□□□ 0.78
COPS3-201ENST00000268717 CCDC125Q86Z20 511 aa19.88■□□□□ 0.77
COPS3-201ENST00000268717 ERBB3P21860 1342 aa19.88■□□□□ 0.77
COPS3-201ENST00000268717 CSB-PGBD3P0DP91 1061 aa19.87■□□□□ 0.77
COPS3-201ENST00000268717 IFT57Q9NWB7 429 aa19.87■□□□□ 0.77
COPS3-201ENST00000268717 CARD10Q9BWT7 1032 aa19.87■□□□□ 0.77
COPS3-201ENST00000268717 LRRC37A3O60309 1634 aa19.85■□□□□ 0.77
COPS3-201ENST00000268717 NCAPD2Q15021 1401 aa19.85■□□□□ 0.77
COPS3-201ENST00000268717 ZNF853P0CG23 659 aa19.85■□□□□ 0.77
COPS3-201ENST00000268717 RARSP54136 660 aaKnown RBP19.85■□□□□ 0.77
COPS3-201ENST00000268717 GNAI1P63096 354 aa19.85■□□□□ 0.77
COPS3-201ENST00000268717 DLG5Q8TDM6 1919 aa19.85■□□□□ 0.77
COPS3-201ENST00000268717 FAM182BQ5T319 152 aa19.84■□□□□ 0.77
COPS3-201ENST00000268717 GAS2L2Q8NHY3 880 aa19.84■□□□□ 0.77
COPS3-201ENST00000268717 ZNF428Q96B54 188 aa19.84■□□□□ 0.77
COPS3-201ENST00000268717 FAM208AQ9UK61 1670 aaKnown RBP19.84■□□□□ 0.77
COPS3-201ENST00000268717 ANKRD24Q8TF21 1146 aa19.84■□□□□ 0.77
COPS3-201ENST00000268717 HTATSF1O43719 755 aaKnown RBP19.82■□□□□ 0.76
COPS3-201ENST00000268717 PLIN1O60240 522 aa19.82■□□□□ 0.76
COPS3-201ENST00000268717 TSR2Q969E8 191 aaKnown RBP19.82■□□□□ 0.76
COPS3-201ENST00000268717 CFAP44Q96MT7 982 aa19.82■□□□□ 0.76
COPS3-201ENST00000268717 DISP2A7MBM2 1401 aa19.82■□□□□ 0.76
COPS3-201ENST00000268717 PDE3AQ14432 1141 aa19.81■□□□□ 0.76
COPS3-201ENST00000268717 EXOC6Q8TAG9 804 aa19.81■□□□□ 0.76
COPS3-201ENST00000268717 CDCA7Q9BWT1 371 aaPredicted RBP19.81■□□□□ 0.76
COPS3-201ENST00000268717 BCAR3O75815 825 aa19.8■□□□□ 0.76
COPS3-201ENST00000268717 EXOSC9Q06265 439 aaKnown RBP19.8■□□□□ 0.76
COPS3-201ENST00000268717 NLRP2Q9NX02 1062 aa19.8■□□□□ 0.76
COPS3-201ENST00000268717 RGPD2P0DJD1 1756 aa19.8■□□□□ 0.76
COPS3-201ENST00000268717 FAM196AQ6ZSG2 479 aa19.8■□□□□ 0.76
COPS3-201ENST00000268717 LTV1Q96GA3 475 aaPredicted RBP19.8■□□□□ 0.76
COPS3-201ENST00000268717 SF3B2Q13435 895 aaKnown RBP19.79■□□□□ 0.76
COPS3-201ENST00000268717 DDB1Q16531 1140 aa19.79■□□□□ 0.76
COPS3-201ENST00000268717 TNS1Q9HBL0 1735 aaKnown RBP19.79■□□□□ 0.76
COPS3-201ENST00000268717 PLEKHG2Q9H7P9 1386 aa19.78■□□□□ 0.76
COPS3-201ENST00000268717 MTHFSDQ2M296 383 aaKnown RBP19.78■□□□□ 0.76
COPS3-201ENST00000268717 ALDH1L2Q3SY69 923 aa19.77■□□□□ 0.76
COPS3-201ENST00000268717 CCDC136Q96JN2 1154 aa19.77■□□□□ 0.76
COPS3-201ENST00000268717 CRBNQ96SW2 442 aa19.77■□□□□ 0.76
COPS3-201ENST00000268717 B4GALNT3Q6L9W6 998 aa19.76■□□□□ 0.75
COPS3-201ENST00000268717 BRPF1P55201 1214 aaPredicted RBP19.76■□□□□ 0.75
COPS3-201ENST00000268717 NBPF6Q5VWK0 638 aa19.76■□□□□ 0.75
COPS3-201ENST00000268717 NBPF4Q96M43 638 aa19.76■□□□□ 0.75
COPS3-201ENST00000268717 THUMPD2Q9BTF0 503 aaKnown RBP19.76■□□□□ 0.75
COPS3-201ENST00000268717 SBF2Q86WG5 1849 aa19.76■□□□□ 0.75
COPS3-201ENST00000268717 C20orf194Q5TEA3 1177 aa19.75■□□□□ 0.75
COPS3-201ENST00000268717 DEFB132Q7Z7B7 95 aa19.75■□□□□ 0.75
COPS3-201ENST00000268717 RTF1Q92541 710 aaKnown RBP19.75■□□□□ 0.75
COPS3-201ENST00000268717 MBIPQ9NS73 344 aa19.75■□□□□ 0.75
COPS3-201ENST00000268717 OVOS2A0A0G2JMS6 1433 aa19.75■□□□□ 0.75
COPS3-201ENST00000268717 CHL1O00533 1208 aa19.74■□□□□ 0.75
COPS3-201ENST00000268717 MS4A1P11836 297 aa19.74■□□□□ 0.75
COPS3-201ENST00000268717 AAMPQ13685 434 aa19.74■□□□□ 0.75
COPS3-201ENST00000268717 TNS2Q63HR2 1409 aa19.74■□□□□ 0.75
COPS3-201ENST00000268717 IL2RBP14784 551 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms