RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 MAP7D2Q96T17 732 aa14.11□□□□□ -0.15
CLSTN3-201ENST00000266546 CEP170BQ9Y4F5 1589 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-201ENST00000266546 RNF123Q5XPI4 1314 aa14.11□□□□□ -0.15
CLSTN3-201ENST00000266546 ARHGEF28Q8N1W1 1705 aaKnown RBP14.11□□□□□ -0.15
CLSTN3-201ENST00000266546 GOLGA6L6A8MZA4 724 aa14.11□□□□□ -0.15
CLSTN3-201ENST00000266546 EXOSC9Q06265 439 aaKnown RBP14.11□□□□□ -0.15
CLSTN3-201ENST00000266546 OS9Q13438 667 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-201ENST00000266546 CCDC173Q0VFZ6 552 aa14.1□□□□□ -0.15
CLSTN3-201ENST00000266546 NPHP3Q7Z494 1330 aa14.1□□□□□ -0.15
CLSTN3-201ENST00000266546 RIMS1Q86UR5 1692 aaKnown RBP14.1□□□□□ -0.15
CLSTN3-201ENST00000266546 HMMRO75330 724 aa14.1□□□□□ -0.15
CLSTN3-201ENST00000266546 ARHGAP23Q9P227 1491 aa14.1□□□□□ -0.15
CLSTN3-201ENST00000266546 IFT57Q9NWB7 429 aa14.1□□□□□ -0.15
CLSTN3-201ENST00000266546 NRDCO43847 1150 aa14.09□□□□□ -0.15
CLSTN3-201ENST00000266546 KIAA1211Q6ZU35 1233 aa14.09□□□□□ -0.15
CLSTN3-201ENST00000266546 PRR36Q9H6K5 1346 aa14.09□□□□□ -0.15
CLSTN3-201ENST00000266546 RBM33Q96EV2 1170 aaKnown RBP14.09□□□□□ -0.15
CLSTN3-201ENST00000266546 TRIM6-TRIM34B2RNG4 842 aa14.08□□□□□ -0.15
CLSTN3-201ENST00000266546 FOXD4L6Q3SYB3 417 aaPredicted RBP14.08□□□□□ -0.15
CLSTN3-201ENST00000266546 FOXD4L3Q6VB84 417 aaPredicted RBP14.08□□□□□ -0.15
CLSTN3-201ENST00000266546 TBC1D2Q9BYX2 928 aa14.08□□□□□ -0.15
CLSTN3-201ENST00000266546 TSPYL4Q9UJ04 414 aa14.08□□□□□ -0.15
CLSTN3-201ENST00000266546 USP6P35125 1406 aa14.08□□□□□ -0.16
CLSTN3-201ENST00000266546 HDAC5Q9UQL6 1122 aa14.08□□□□□ -0.16
CLSTN3-201ENST00000266546 ZRANB1Q9UGI0 708 aa14.08□□□□□ -0.16
CLSTN3-201ENST00000266546 SBNO1A3KN83 1393 aa14.07□□□□□ -0.16
CLSTN3-201ENST00000266546 C8orf34Q49A92 452 aa14.07□□□□□ -0.16
CLSTN3-201ENST00000266546 CAVIN1Q6NZI2 390 aaKnown RBP14.07□□□□□ -0.16
CLSTN3-201ENST00000266546 MYO5BQ9ULV0 1848 aa14.07□□□□□ -0.16
CLSTN3-201ENST00000266546 REC8O95072 547 aa14.07□□□□□ -0.16
CLSTN3-201ENST00000266546 FGD1P98174 961 aa14.07□□□□□ -0.16
CLSTN3-201ENST00000266546 RBM10P98175 930 aaKnown RBP14.07□□□□□ -0.16
CLSTN3-201ENST00000266546 EIF4A2Q14240 407 aaKnown RBP14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 NLRP2Q9NX02 1062 aa14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 IL13P35225 146 aa14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 EVA1CP58658 441 aa14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 MTERF4Q7Z6M4 381 aaKnown RBP14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 HSPA2P54652 639 aa14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 ALDH1L2Q3SY69 923 aa14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 CPS1P31327 1500 aa14.06□□□□□ -0.16
CLSTN3-201ENST00000266546 CPSF1Q10570 1443 aaKnown RBP14.05□□□□□ -0.16
CLSTN3-201ENST00000266546 TWISTNBQ3B726 338 aaPredicted RBP14.05□□□□□ -0.16
CLSTN3-201ENST00000266546 AMOTQ4VCS5 1084 aa14.05□□□□□ -0.16
CLSTN3-201ENST00000266546 UBR1Q8IWV7 1749 aa14.05□□□□□ -0.16
CLSTN3-201ENST00000266546 MVPQ14764 893 aaKnown RBP14.05□□□□□ -0.16
CLSTN3-201ENST00000266546 HSP90AB2PQ58FF8 381 aa14.05□□□□□ -0.16
CLSTN3-201ENST00000266546 CIZ1Q9ULV3 898 aaPredicted RBP14.05□□□□□ -0.16
CLSTN3-201ENST00000266546 TATP17735 454 aaPredicted RBP14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 MAP3K19Q56UN5 1328 aa14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 XPCQ01831 940 aaPredicted RBP14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 KIF24Q5T7B8 1368 aa14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 C3P01024 1663 aa14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 HTATSF1O43719 755 aaKnown RBP14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 CDC45O75419 566 aa14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 RARSP54136 660 aaKnown RBP14.04□□□□□ -0.16
CLSTN3-201ENST00000266546 ADGRL3Q9HAR2 1447 aa14.03□□□□□ -0.16
CLSTN3-201ENST00000266546 GNAT3A8MTJ3 354 aa14.03□□□□□ -0.16
CLSTN3-201ENST00000266546 IGHDP01880 384 aa14.03□□□□□ -0.16
CLSTN3-201ENST00000266546 FBLN1P23142 703 aa14.03□□□□□ -0.16
CLSTN3-201ENST00000266546 RNF214Q8ND24 703 aa14.03□□□□□ -0.16
CLSTN3-201ENST00000266546 INTS3Q68E01 1043 aaKnown RBP14.02□□□□□ -0.16
CLSTN3-201ENST00000266546 CCDC39Q9UFE4 941 aa14.02□□□□□ -0.16
CLSTN3-201ENST00000266546 CDC42BPGQ6DT37 1551 aa14.02□□□□□ -0.16
CLSTN3-201ENST00000266546 CDK12Q9NYV4 1490 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-201ENST00000266546 USP32Q8NFA0 1604 aa14.02□□□□□ -0.17
CLSTN3-201ENST00000266546 SPG7Q9UQ90 795 aa14.02□□□□□ -0.17
CLSTN3-201ENST00000266546 XRCC6P12956 609 aaKnown RBP eCLIP14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 ZSCAN30Q86W11 494 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 IP6K1Q92551 441 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 ZNF530Q6P9A1 599 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 K7ELQ4 463 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 CLCN1P35523 988 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 TBC1D32Q96NH3 1257 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 PIP4K2BP78356 416 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 CCDC30Q5VVM6 783 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 ATF7IPQ6VMQ6 1270 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 PRDM11Q9NQV5 511 aa14.01□□□□□ -0.17
CLSTN3-201ENST00000266546 PRPF40AO75400 957 aaKnown RBP14□□□□□ -0.17
CLSTN3-201ENST00000266546 NECTIN2Q92692 538 aa14□□□□□ -0.17
CLSTN3-201ENST00000266546 RILPL2Q969X0 211 aa14□□□□□ -0.17
CLSTN3-201ENST00000266546 HOXC9P31274 260 aa14□□□□□ -0.17
CLSTN3-201ENST00000266546 ZC3H6P61129 1189 aaKnown RBP14□□□□□ -0.17
CLSTN3-201ENST00000266546 NOB1Q9ULX3 412 aaKnown RBP14□□□□□ -0.17
CLSTN3-201ENST00000266546 GCP02774 474 aa13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 PTPRUQ92729 1446 aa13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 ARHGEF10O15013 1369 aa13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 ZNF521Q96K83 1311 aa13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 NAP1L2Q9ULW6 460 aaPredicted RBP13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 ATP6V1DQ9Y5K8 247 aa13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 RABEP1Q15276 862 aa13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 TMEM94Q12767 1356 aa13.99□□□□□ -0.17
CLSTN3-201ENST00000266546 TTC5Q8N0Z6 440 aa13.98□□□□□ -0.17
CLSTN3-201ENST00000266546 ORAI2Q96SN7 254 aa13.98□□□□□ -0.17
CLSTN3-201ENST00000266546 PANK2Q9BZ23 570 aa13.98□□□□□ -0.17
CLSTN3-201ENST00000266546 USP31Q70CQ4 1352 aa13.98□□□□□ -0.17
CLSTN3-201ENST00000266546 THUMPD2Q9BTF0 503 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-201ENST00000266546 PNPLA6Q8IY17 1366 aa13.98□□□□□ -0.17
CLSTN3-201ENST00000266546 MBD3O95983 291 aa13.97□□□□□ -0.17
CLSTN3-201ENST00000266546 ZMYND15Q9H091 742 aa13.97□□□□□ -0.17
CLSTN3-201ENST00000266546 RTL1A6NKG5 1358 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms