RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 MSH6P52701 1360 aa12.66□□□□□ -0.38
COPB1-201ENST00000249923 USP31Q70CQ4 1352 aa12.66□□□□□ -0.38
COPB1-201ENST00000249923 CALD1Q05682 793 aaKnown RBP12.65□□□□□ -0.38
COPB1-201ENST00000249923 CEP170BQ9Y4F5 1589 aaPredicted RBP12.65□□□□□ -0.38
COPB1-201ENST00000249923 PLEKHM2Q8IWE5 1019 aa12.65□□□□□ -0.38
COPB1-201ENST00000249923 MIS18AQ9NYP9 233 aa12.65□□□□□ -0.38
COPB1-201ENST00000249923 INTS3Q68E01 1043 aaKnown RBP12.65□□□□□ -0.38
COPB1-201ENST00000249923 SNX21Q969T3 373 aa12.65□□□□□ -0.38
COPB1-201ENST00000249923 PIK3C2AO00443 1686 aa12.64□□□□□ -0.39
COPB1-201ENST00000249923 MAP3K19Q56UN5 1328 aa12.64□□□□□ -0.39
COPB1-201ENST00000249923 FSD2A1L4K1 749 aa12.64□□□□□ -0.39
COPB1-201ENST00000249923 CHMP5Q9NZZ3 219 aa12.64□□□□□ -0.39
COPB1-201ENST00000249923 PLEKHG3A1L390 1219 aa12.64□□□□□ -0.39
COPB1-201ENST00000249923 SOX12O15370 315 aa12.63□□□□□ -0.39
COPB1-201ENST00000249923 DCTPP1Q9H773 170 aa12.63□□□□□ -0.39
COPB1-201ENST00000249923 RTL1A6NKG5 1358 aa12.63□□□□□ -0.39
COPB1-201ENST00000249923 CEBPAP49715 358 aaPredicted RBP12.63□□□□□ -0.39
COPB1-201ENST00000249923 SLC26A8Q96RN1 970 aa12.63□□□□□ -0.39
COPB1-201ENST00000249923 PLEKHG1Q9ULL1 1385 aa12.63□□□□□ -0.39
COPB1-201ENST00000249923 LMOD3Q0VAK6 560 aa12.63□□□□□ -0.39
COPB1-201ENST00000249923 PANK2Q9BZ23 570 aa12.63□□□□□ -0.39
COPB1-201ENST00000249923 NCLP19338 710 aaKnown RBP12.62□□□□□ -0.39
COPB1-201ENST00000249923 CEP85Q6P2H3 762 aa12.62□□□□□ -0.39
COPB1-201ENST00000249923 MEIS3Q99687 375 aa12.62□□□□□ -0.39
COPB1-201ENST00000249923 KIF24Q5T7B8 1368 aa12.62□□□□□ -0.39
COPB1-201ENST00000249923 XRCC6P12956 609 aaKnown RBP eCLIP12.62□□□□□ -0.39
COPB1-201ENST00000249923 GLIPR1L2Q4G1C9 344 aa12.62□□□□□ -0.39
COPB1-201ENST00000249923 HSCBQ8IWL3 235 aa12.62□□□□□ -0.39
COPB1-201ENST00000249923 API5Q9BZZ5 524 aaKnown RBP12.62□□□□□ -0.39
COPB1-201ENST00000249923 AK9Q5TCS8 1911 aa12.62□□□□□ -0.39
COPB1-201ENST00000249923 G2E3Q7L622 706 aa12.61□□□□□ -0.39
COPB1-201ENST00000249923 TUBGCP6Q96RT7 1819 aa12.61□□□□□ -0.39
COPB1-201ENST00000249923 TNPO1Q92973 898 aaKnown RBP12.61□□□□□ -0.39
COPB1-201ENST00000249923 TRIM44Q96DX7 344 aaPredicted RBP12.61□□□□□ -0.39
COPB1-201ENST00000249923 LRRC37A3O60309 1634 aa12.61□□□□□ -0.39
COPB1-201ENST00000249923 KIAA0232Q92628 1395 aa12.61□□□□□ -0.39
COPB1-201ENST00000249923 NWD1Q149M9 1564 aa12.61□□□□□ -0.39
COPB1-201ENST00000249923 SMARCA5O60264 1052 aaPredicted RBP12.61□□□□□ -0.39
COPB1-201ENST00000249923 MTHFSDQ2M296 383 aaKnown RBP12.61□□□□□ -0.39
COPB1-201ENST00000249923 ANKRD44Q8N8A2 993 aa12.6□□□□□ -0.39
COPB1-201ENST00000249923 KDRP35968 1356 aa12.6□□□□□ -0.39
COPB1-201ENST00000249923 TRAK2O60296 914 aa12.6□□□□□ -0.39
COPB1-201ENST00000249923 GAS2L2Q8NHY3 880 aa12.6□□□□□ -0.39
COPB1-201ENST00000249923 DIP2AQ14689 1571 aa12.59□□□□□ -0.39
COPB1-201ENST00000249923 TTC22Q5TAA0 569 aa12.59□□□□□ -0.39
COPB1-201ENST00000249923 FAM208AQ9UK61 1670 aaKnown RBP12.59□□□□□ -0.39
COPB1-201ENST00000249923 F6X3S4 739 aa12.58□□□□□ -0.39
COPB1-201ENST00000249923 RAB3GAP1Q15042 981 aa12.58□□□□□ -0.39
COPB1-201ENST00000249923 RRAGDQ9NQL2 400 aaPredicted RBP12.58□□□□□ -0.4
COPB1-201ENST00000249923 XRN1Q8IZH2 1706 aaKnown RBP12.58□□□□□ -0.4
COPB1-201ENST00000249923 ARHGEF10O15013 1369 aa12.58□□□□□ -0.4
COPB1-201ENST00000249923 CDC45O75419 566 aa12.57□□□□□ -0.4
COPB1-201ENST00000249923 ARHGAP23Q9P227 1491 aa12.57□□□□□ -0.4
COPB1-201ENST00000249923 GOLGA6L3A6NEY3 463 aa12.57□□□□□ -0.4
COPB1-201ENST00000249923 SLIT1O75093 1534 aa12.57□□□□□ -0.4
COPB1-201ENST00000249923 SLC4A2P04920 1241 aa12.57□□□□□ -0.4
COPB1-201ENST00000249923 EYA1Q99502 592 aa12.57□□□□□ -0.4
COPB1-201ENST00000249923 ESF1Q9H501 851 aaKnown RBP12.57□□□□□ -0.4
COPB1-201ENST00000249923 APBB1O00213 710 aa12.56□□□□□ -0.4
COPB1-201ENST00000249923 SDSP20132 328 aa12.56□□□□□ -0.4
COPB1-201ENST00000249923 K7ELQ4 463 aaPredicted RBP12.56□□□□□ -0.4
COPB1-201ENST00000249923 AMOTL2Q9Y2J4 779 aa12.56□□□□□ -0.4
COPB1-201ENST00000249923 IGSF1Q8N6C5 1336 aa12.56□□□□□ -0.4
COPB1-201ENST00000249923 GAS2L3Q86XJ1 694 aa12.56□□□□□ -0.4
COPB1-201ENST00000249923 USP26Q9BXU7 913 aa12.56□□□□□ -0.4
COPB1-201ENST00000249923 CHMP4BQ9H444 224 aaKnown RBP12.56□□□□□ -0.4
COPB1-201ENST00000249923 PTPRCP08575 1304 aa12.55□□□□□ -0.4
COPB1-201ENST00000249923 SBNO1A3KN83 1393 aa12.55□□□□□ -0.4
COPB1-201ENST00000249923 SSFA2P28290 1259 aa12.54□□□□□ -0.4
COPB1-201ENST00000249923 PKP1Q13835 747 aa12.54□□□□□ -0.4
COPB1-201ENST00000249923 HSP90AA2PQ14568 343 aaPredicted RBP12.54□□□□□ -0.4
COPB1-201ENST00000249923 FLT4P35916 1363 aa12.54□□□□□ -0.4
COPB1-201ENST00000249923 HSP90AB1P08238 724 aaKnown RBP12.54□□□□□ -0.4
COPB1-201ENST00000249923 HDGFP51858 240 aaKnown RBP12.54□□□□□ -0.4
COPB1-201ENST00000249923 TSHZ3Q63HK5 1081 aa12.54□□□□□ -0.4
COPB1-201ENST00000249923 FAM43AQ8N2R8 423 aa12.54□□□□□ -0.4
COPB1-201ENST00000249923 SALL3Q9BXA9 1300 aa12.53□□□□□ -0.4
COPB1-201ENST00000249923 RPAP2Q8IXW5 612 aaPredicted RBP12.53□□□□□ -0.4
COPB1-201ENST00000249923 N4BP2Q86UW6 1770 aaPredicted RBP12.53□□□□□ -0.4
COPB1-201ENST00000249923 USP54Q70EL1 1684 aa12.52□□□□□ -0.4
COPB1-201ENST00000249923 TSPYL4Q9UJ04 414 aa12.52□□□□□ -0.4
COPB1-201ENST00000249923 NUTM2GQ5VZR2 741 aa12.52□□□□□ -0.41
COPB1-201ENST00000249923 CIZ1Q9ULV3 898 aaPredicted RBP12.52□□□□□ -0.41
COPB1-201ENST00000249923 TTC21AQ8NDW8 1320 aa12.52□□□□□ -0.41
COPB1-201ENST00000249923 L1TD1Q5T7N2 865 aaKnown RBP12.52□□□□□ -0.41
COPB1-201ENST00000249923 SLC4A10Q6U841 1118 aa12.51□□□□□ -0.41
COPB1-201ENST00000249923 UBE2Q2Q8WVN8 375 aa12.51□□□□□ -0.41
COPB1-201ENST00000249923 PNMA6EA0A0J9YXQ4 647 aa12.51□□□□□ -0.41
COPB1-201ENST00000249923 DDX11L8A8MPP1 907 aa12.51□□□□□ -0.41
COPB1-201ENST00000249923 IL17REQ8NFR9 667 aa12.5□□□□□ -0.41
COPB1-201ENST00000249923 NECTIN2Q92692 538 aa12.5□□□□□ -0.41
COPB1-201ENST00000249923 EXOC6BQ9Y2D4 811 aa12.5□□□□□ -0.41
COPB1-201ENST00000249923 CYP2E1P05181 493 aaPredicted RBP12.5□□□□□ -0.41
COPB1-201ENST00000249923 PLPPR3Q6T4P5 718 aa12.5□□□□□ -0.41
COPB1-201ENST00000249923 CHAMP1Q96JM3 812 aa12.5□□□□□ -0.41
COPB1-201ENST00000249923 CLEC17AQ6ZS10 378 aa12.49□□□□□ -0.41
COPB1-201ENST00000249923 ANP32BQ92688 251 aaKnown RBP12.49□□□□□ -0.41
COPB1-201ENST00000249923 PKNOX2Q96KN3 472 aa12.49□□□□□ -0.41
COPB1-201ENST00000249923 LTN1O94822 1766 aa12.49□□□□□ -0.41
COPB1-201ENST00000249923 HOXC9P31274 260 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms