RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ZDHHC9Q9Y397 364 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 SPAG9O60271 1321 aaKnown RBP17.65■□□□□ 0.42
PTPRA-201ENST00000216877 DTNBO60941 627 aa17.64■□□□□ 0.42
PTPRA-201ENST00000216877 MROH2AA6NES4 1674 aa17.64■□□□□ 0.41
PTPRA-201ENST00000216877 GPATCH11Q8N954 259 aa17.64■□□□□ 0.41
PTPRA-201ENST00000216877 ANKRD7Q92527 254 aa17.64■□□□□ 0.41
PTPRA-201ENST00000216877 NOL10Q9BSC4 688 aaKnown RBP17.64■□□□□ 0.41
PTPRA-201ENST00000216877 FAM184AQ8NB25 1140 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 TET3O43151 1660 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 PIK3C2BO00750 1634 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 CCDC144AA2RUR9 1427 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 HNRNPH2P55795 449 aaKnown RBP17.63■□□□□ 0.41
PTPRA-201ENST00000216877 CLEC17AQ6ZS10 378 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 USP48Q86UV5 1035 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 RGS22Q8NE09 1264 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 CFAP53Q96M91 514 aa17.63■□□□□ 0.41
PTPRA-201ENST00000216877 DDX41Q9UJV9 622 aaKnown RBP17.63■□□□□ 0.41
PTPRA-201ENST00000216877 KIAA1524Q8TCG1 905 aa17.62■□□□□ 0.41
PTPRA-201ENST00000216877 LRMPQ12912 555 aa17.62■□□□□ 0.41
PTPRA-201ENST00000216877 NGEFQ8N5V2 710 aa17.62■□□□□ 0.41
PTPRA-201ENST00000216877 DUOX2Q9NRD8 1548 aa17.61■□□□□ 0.41
PTPRA-201ENST00000216877 KDM4AO75164 1064 aa17.61■□□□□ 0.41
PTPRA-201ENST00000216877 CCDC186Q7Z3E2 898 aa17.61■□□□□ 0.41
PTPRA-201ENST00000216877 UHRF1BP1Q6BDS2 1440 aa17.61■□□□□ 0.41
PTPRA-201ENST00000216877 GTF2A1P52655 376 aaPredicted RBP17.6■□□□□ 0.41
PTPRA-201ENST00000216877 TRAPPC8Q9Y2L5 1435 aa17.6■□□□□ 0.41
PTPRA-201ENST00000216877 C16orf71Q8IYS4 520 aaPredicted RBP17.6■□□□□ 0.41
PTPRA-201ENST00000216877 KIF18AQ8NI77 898 aa17.6■□□□□ 0.41
PTPRA-201ENST00000216877 TEX2Q8IWB9 1127 aa17.6■□□□□ 0.41
PTPRA-201ENST00000216877 TRIM5Q9C035 493 aa17.6■□□□□ 0.41
PTPRA-201ENST00000216877 ZMYM3Q14202 1370 aa17.6■□□□□ 0.41
PTPRA-201ENST00000216877 MTHFSP49914 203 aa17.59■□□□□ 0.41
PTPRA-201ENST00000216877 INTS3Q68E01 1043 aaKnown RBP17.59■□□□□ 0.41
PTPRA-201ENST00000216877 WDR63Q8IWG1 891 aa17.59■□□□□ 0.41
PTPRA-201ENST00000216877 NEK11Q8NG66 645 aa17.59■□□□□ 0.41
PTPRA-201ENST00000216877 STK26Q9P289 416 aa17.59■□□□□ 0.41
PTPRA-201ENST00000216877 ARHGAP5Q13017 1502 aa17.59■□□□□ 0.41
PTPRA-201ENST00000216877 ZBTB40Q9NUA8 1239 aa17.59■□□□□ 0.41
PTPRA-201ENST00000216877 TRMT1Q9NXH9 659 aaKnown RBP17.59■□□□□ 0.41
PTPRA-201ENST00000216877 UPF3BQ9BZI7 483 aaKnown RBP17.58■□□□□ 0.41
PTPRA-201ENST00000216877 SPTLC3Q9NUV7 552 aa17.58■□□□□ 0.41
PTPRA-201ENST00000216877 LMTK2Q8IWU2 1503 aa17.58■□□□□ 0.41
PTPRA-201ENST00000216877 ASXL2Q76L83 1435 aa17.58■□□□□ 0.41
PTPRA-201ENST00000216877 LOC102724159A0A0B4J2E5 919 aa17.58■□□□□ 0.4
PTPRA-201ENST00000216877 PWP2Q15269 919 aaKnown RBP17.58■□□□□ 0.4
PTPRA-201ENST00000216877 TMX3Q96JJ7 454 aa17.58■□□□□ 0.4
PTPRA-201ENST00000216877 LARP6Q9BRS8 491 aaKnown RBP17.58■□□□□ 0.4
PTPRA-201ENST00000216877 UVSSAQ2YD98 709 aa17.58■□□□□ 0.4
PTPRA-201ENST00000216877 GORABQ5T7V8 394 aa17.57■□□□□ 0.4
PTPRA-201ENST00000216877 ATP7AQ04656 1500 aa17.57■□□□□ 0.4
PTPRA-201ENST00000216877 CYP2E1P05181 493 aaPredicted RBP17.57■□□□□ 0.4
PTPRA-201ENST00000216877 ELF2Q15723 593 aa17.57■□□□□ 0.4
PTPRA-201ENST00000216877 ZNF518AQ6AHZ1 1483 aa17.57■□□□□ 0.4
PTPRA-201ENST00000216877 CCDC183Q5T5S1 534 aa17.57■□□□□ 0.4
PTPRA-201ENST00000216877 TSPYL1Q9H0U9 437 aa17.57■□□□□ 0.4
PTPRA-201ENST00000216877 HDAC5Q9UQL6 1122 aa17.57■□□□□ 0.4
PTPRA-201ENST00000216877 IQGAP1P46940 1657 aa17.56■□□□□ 0.4
PTPRA-201ENST00000216877 KCNF1Q9H3M0 494 aa17.56■□□□□ 0.4
PTPRA-201ENST00000216877 CAMK4Q16566 473 aa17.56■□□□□ 0.4
PTPRA-201ENST00000216877 CNPY2Q9Y2B0 182 aa17.56■□□□□ 0.4
PTPRA-201ENST00000216877 CLTCL1P53675 1640 aa17.56■□□□□ 0.4
PTPRA-201ENST00000216877 SMTNL1A8MU46 457 aa17.56■□□□□ 0.4
PTPRA-201ENST00000216877 USP26Q9BXU7 913 aa17.56■□□□□ 0.4
PTPRA-201ENST00000216877 FEZ2Q9UHY8 353 aaPredicted RBP17.56■□□□□ 0.4
PTPRA-201ENST00000216877 ZNF215Q9UL58 517 aaPredicted RBP17.55■□□□□ 0.4
PTPRA-201ENST00000216877 COL17A1Q9UMD9 1497 aaPredicted RBP17.55■□□□□ 0.4
PTPRA-201ENST00000216877 TEX35Q5T0J7 233 aa17.55■□□□□ 0.4
PTPRA-201ENST00000216877 ZC3H13Q5T200 1668 aaKnown RBP17.54■□□□□ 0.4
PTPRA-201ENST00000216877 RAD51AP2Q09MP3 1159 aa17.54■□□□□ 0.4
PTPRA-201ENST00000216877 ZNF397Q8NF99 534 aaPredicted RBP17.54■□□□□ 0.4
PTPRA-201ENST00000216877 DIP2CQ9Y2E4 1556 aa17.54■□□□□ 0.4
PTPRA-201ENST00000216877 MADDQ8WXG6 1647 aa17.54■□□□□ 0.4
PTPRA-201ENST00000216877 REC8O95072 547 aa17.54■□□□□ 0.4
PTPRA-201ENST00000216877 KMT5BQ4FZB7 885 aa17.54■□□□□ 0.4
PTPRA-201ENST00000216877 GCC1Q96CN9 775 aa17.54■□□□□ 0.4
PTPRA-201ENST00000216877 RASSF4Q9H2L5 321 aa17.54■□□□□ 0.4
PTPRA-201ENST00000216877 CEP135Q66GS9 1140 aa17.53■□□□□ 0.4
PTPRA-201ENST00000216877 NRBP1Q9UHY1 535 aa17.53■□□□□ 0.4
PTPRA-201ENST00000216877 MORC2Q9Y6X9 1032 aaPredicted RBP17.53■□□□□ 0.4
PTPRA-201ENST00000216877 HECW2Q9P2P5 1572 aa17.53■□□□□ 0.4
PTPRA-201ENST00000216877 REREQ9P2R6 1566 aa17.53■□□□□ 0.4
PTPRA-201ENST00000216877 HTATSF1O43719 755 aaKnown RBP17.53■□□□□ 0.4
PTPRA-201ENST00000216877 TPM3P06753 285 aa17.53■□□□□ 0.4
PTPRA-201ENST00000216877 GYS2P54840 703 aa17.53■□□□□ 0.4
PTPRA-201ENST00000216877 SYTL4Q96C24 671 aaPredicted RBP17.53■□□□□ 0.4
PTPRA-201ENST00000216877 VIRMAQ69YN4 1812 aaKnown RBP17.53■□□□□ 0.4
PTPRA-201ENST00000216877 CTIFO43310 598 aaKnown RBP17.52■□□□□ 0.4
PTPRA-201ENST00000216877 KIAA1210Q9ULL0 1709 aa17.52■□□□□ 0.4
PTPRA-201ENST00000216877 KRBA2Q6ZNG9 492 aa17.52■□□□□ 0.4
PTPRA-201ENST00000216877 OTUD7AQ8TE49 926 aaPredicted RBP17.52■□□□□ 0.4
PTPRA-201ENST00000216877 ANO2Q9NQ90 1003 aa17.52■□□□□ 0.4
PTPRA-201ENST00000216877 SCAPERQ9BY12 1400 aa17.52■□□□□ 0.4
PTPRA-201ENST00000216877 GSPT1P15170 499 aaKnown RBP17.52■□□□□ 0.39
PTPRA-201ENST00000216877 TRPM2O94759 1503 aa17.52■□□□□ 0.39
PTPRA-201ENST00000216877 MYCNP04198 464 aaPredicted RBP17.51■□□□□ 0.39
PTPRA-201ENST00000216877 SKIDA1Q1XH10 827 aa17.51■□□□□ 0.39
PTPRA-201ENST00000216877 PRAG1Q86YV5 1406 aa17.51■□□□□ 0.39
PTPRA-201ENST00000216877 GPRASP1Q5JY77 1395 aa17.51■□□□□ 0.39
PTPRA-201ENST00000216877 TRIM66O15016 1216 aa17.51■□□□□ 0.39
PTPRA-201ENST00000216877 GOLGA6L4A6NEF3 574 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms