RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 TmpoQ61033 693 aaKnown RBP10.98□□□□□ -0.65
Trim39-205ENSMUST00000173369 Ccdc155Q80VJ8 648 aa10.98□□□□□ -0.65
Trim39-205ENSMUST00000173369 Exoc5Q3TPX4 708 aa10.98□□□□□ -0.65
Trim39-205ENSMUST00000173369 Ankrd23Q812A3 306 aa10.98□□□□□ -0.65
Trim39-205ENSMUST00000173369 Atxn3Q9CVD2 355 aa10.98□□□□□ -0.65
Trim39-205ENSMUST00000173369 Scn7aB1AYL1 1681 aa10.98□□□□□ -0.65
Trim39-205ENSMUST00000173369 GakQ99KY4 1305 aa10.98□□□□□ -0.65
Trim39-205ENSMUST00000173369 Sik1Q60670 779 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 Gm21663A0A0G2JE01 267 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 Gm7361D3Z6R1 267 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 5031410I06RikE9Q4E0 267 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 Gm1979E9QAN3 267 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 Gm5862K7N5V5 267 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 Gm10220K7N660 267 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 Nkx2-3P97334 362 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 Taok3Q8BYC6 898 aa10.97□□□□□ -0.65
Trim39-205ENSMUST00000173369 HypkQ9CR41 129 aa10.96□□□□□ -0.65
Trim39-205ENSMUST00000173369 Rgs17Q9QZB0 210 aa10.96□□□□□ -0.65
Trim39-205ENSMUST00000173369 Tnrc6cQ3UHC0 1690 aaKnown RBP10.96□□□□□ -0.66
Trim39-205ENSMUST00000173369 Trim26Q99PN3 545 aa10.96□□□□□ -0.66
Trim39-205ENSMUST00000173369 Ltbp1Q8CG19 1712 aa10.95□□□□□ -0.66
Trim39-205ENSMUST00000173369 Ggnbp2Q5SV77 696 aa10.95□□□□□ -0.66
Trim39-205ENSMUST00000173369 Ciz1Q8VEH2 845 aa10.95□□□□□ -0.66
Trim39-205ENSMUST00000173369 Klhdc4Q921I2 584 aa10.95□□□□□ -0.66
Trim39-205ENSMUST00000173369 Tnnt1O88346 262 aa10.95□□□□□ -0.66
Trim39-205ENSMUST00000173369 Dusp27Q148W8 1138 aa10.95□□□□□ -0.66
Trim39-205ENSMUST00000173369 ApobrQ8VBT6 942 aa10.95□□□□□ -0.66
Trim39-205ENSMUST00000173369 Q4VA45 678 aa10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 Ccnl1Q52KE7 532 aaKnown RBP10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 Nop58Q6DFW4 536 aaKnown RBP10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 U2surpQ6NV83 1029 aaKnown RBP10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 Robo1O89026 1612 aa10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 Slit1Q80TR4 1531 aa10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 Prim1P20664 417 aa10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 Slc5a1Q8C3K6 665 aa10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 4930572O03RikQ8C5Y0 211 aa10.94□□□□□ -0.66
Trim39-205ENSMUST00000173369 Shank2Q80Z38 1476 aa10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Ptpn23Q6PB44 1692 aa10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Chmp7Q8R1T1 451 aa10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Speer4f1Q9D5Q6 258 aa10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Kdm6aO70546 1401 aa10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Elp1Q7TT37 1333 aaKnown RBP10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Lrit1Q8K099 624 aa10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Simc1E9Q6E9 1354 aa10.93□□□□□ -0.66
Trim39-205ENSMUST00000173369 Clcn1Q64347 994 aa10.92□□□□□ -0.66
Trim39-205ENSMUST00000173369 Asic4Q7TNS7 539 aa10.92□□□□□ -0.66
Trim39-205ENSMUST00000173369 Pdzd9Q9D9M4 266 aa10.92□□□□□ -0.66
Trim39-205ENSMUST00000173369 Rtf1A2AQ19 715 aaKnown RBP10.92□□□□□ -0.66
Trim39-205ENSMUST00000173369 Ppfibp2O35711 882 aa10.92□□□□□ -0.66
Trim39-205ENSMUST00000173369 Gtf3c3Q3TMP1 882 aa10.91□□□□□ -0.66
Trim39-205ENSMUST00000173369 Gsdma3Q5Y4Y6 464 aa10.91□□□□□ -0.66
Trim39-205ENSMUST00000173369 Bcl2l13P59017 434 aa10.91□□□□□ -0.66
Trim39-205ENSMUST00000173369 Polr3glQ8R0C0 218 aa10.91□□□□□ -0.66
Trim39-205ENSMUST00000173369 Nup153E9Q3G8 1462 aaKnown RBP10.91□□□□□ -0.66
Trim39-205ENSMUST00000173369 Cacna1sQ02789 1880 aa10.91□□□□□ -0.66
Trim39-205ENSMUST00000173369 Phkg2Q9DB30 406 aa10.91□□□□□ -0.66
Trim39-205ENSMUST00000173369 Fer1l6E0CZ42 1862 aa10.9□□□□□ -0.66
Trim39-205ENSMUST00000173369 Gas2l2Q5SSG4 860 aa10.9□□□□□ -0.66
Trim39-205ENSMUST00000173369 Mak16Q8BGS0 296 aaKnown RBP10.9□□□□□ -0.66
Trim39-205ENSMUST00000173369 Ginm1Q91WR6 327 aa10.9□□□□□ -0.66
Trim39-205ENSMUST00000173369 Zbtb38Q3LR78 1197 aa10.89□□□□□ -0.67
Trim39-205ENSMUST00000173369 Ildr2B5TVM2 661 aa10.89□□□□□ -0.67
Trim39-205ENSMUST00000173369 Ppp4r2Q0VGB7 417 aa10.89□□□□□ -0.67
Trim39-205ENSMUST00000173369 Eif3bQ8JZQ9 803 aaKnown RBP10.89□□□□□ -0.67
Trim39-205ENSMUST00000173369 Iqcf3Q9D498 203 aa10.89□□□□□ -0.67
Trim39-205ENSMUST00000173369 Usp19Q3UJD6 1360 aa10.89□□□□□ -0.67
Trim39-205ENSMUST00000173369 Kcnh4A2A5F7 1018 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Amotl1Q9D4H4 968 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Mdc1Q5PSV9 1707 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Cavin4A2AMM0 362 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Rad17Q6NXW6 688 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Mast2Q60592 1734 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Bicdl1A0JNT9 577 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Uspl1Q3ULM6 1089 aa10.88□□□□□ -0.67
Trim39-205ENSMUST00000173369 Erbb3Q61526 1339 aa10.87□□□□□ -0.67
Trim39-205ENSMUST00000173369 Atf7ipQ7TT18 1306 aa10.87□□□□□ -0.67
Trim39-205ENSMUST00000173369 Ofd1Q80Z25 1017 aa10.87□□□□□ -0.67
Trim39-205ENSMUST00000173369 Zfp777B9EKF4 885 aa10.87□□□□□ -0.67
Trim39-205ENSMUST00000173369 Ints5Q8CHT3 1018 aa10.87□□□□□ -0.67
Trim39-205ENSMUST00000173369 PigbQ9JJQ0 542 aa10.87□□□□□ -0.67
Trim39-205ENSMUST00000173369 Nwd2Q6P5U7 1742 aa10.86□□□□□ -0.67
Trim39-205ENSMUST00000173369 Pnpla7A2AJ88 1352 aa10.86□□□□□ -0.67
Trim39-205ENSMUST00000173369 GalcP54818 684 aa10.86□□□□□ -0.67
Trim39-205ENSMUST00000173369 Fchsd2Q3USJ8 740 aa10.86□□□□□ -0.67
Trim39-205ENSMUST00000173369 Swt1Q9DBQ9 907 aa10.86□□□□□ -0.67
Trim39-205ENSMUST00000173369 Aox2Q5SGK3 1345 aa10.86□□□□□ -0.67
Trim39-205ENSMUST00000173369 Plcd4Q8K3R3 807 aa10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 Cap2Q9CYT6 476 aa10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 Zcrb1Q9CZ96 217 aaKnown RBP10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 Zfp444Q3TDV8 331 aaKnown RBP10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 Map4k4P97820 1233 aaKnown RBP10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 4930567H17RikQ3V0K5 233 aa10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 Btbd11Q6GQW0 1109 aa10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 Klc3Q91W40 508 aa10.85□□□□□ -0.67
Trim39-205ENSMUST00000173369 4930523C07RikE9Q2T4 99 aa10.84□□□□□ -0.67
Trim39-205ENSMUST00000173369 Aplp1Q03157 653 aa10.84□□□□□ -0.67
Trim39-205ENSMUST00000173369 Mkrn3Q60764 544 aa10.84□□□□□ -0.67
Trim39-205ENSMUST00000173369 FocadA2AKG8 1798 aa10.84□□□□□ -0.67
Trim39-205ENSMUST00000173369 Gm6268A2A3U9 297 aa10.84□□□□□ -0.67
Trim39-205ENSMUST00000173369 Ahnak2E9PYB0 1738 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 22,080 RNA–protein pairs in 37.6 ms