RNA–Protein interactions for RNA: ENSMUST00000076265.12

Upf3b-201, Transcript of UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3b, Length 2,344 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3b-201ENSMUST00000076265 Nop9Q8BMC4 636 aaKnown RBP11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 HdlbpQ8VDJ3 1268 aaKnown RBP11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Trim33Q99PP7 1142 aa11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Cul7Q8VE73 1689 aa11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Erich2E9Q1A6 463 aa11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Tbc1d2bQ3U0J8 965 aa11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Mpp4Q6P7F1 635 aa11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Srek1Q8BZX4 494 aaKnown RBP11.29□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Lamc2Q61092 1191 aa11.28□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Cdc5lQ6A068 802 aaKnown RBP11.28□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Dnmt3aO88508 908 aaKnown RBP11.27□□□□□ -0.6
Upf3b-201ENSMUST00000076265 JundP15066 341 aa11.27□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Get4Q9D1H7 327 aa11.27□□□□□ -0.6
Upf3b-201ENSMUST00000076265 Fam71bQ5STT6 665 aa11.27□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Jarid2Q62315 1234 aa11.27□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Spire2Q8K1S6 718 aa11.27□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Stk26Q99JT2 416 aa11.27□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Ccdc97Q9DBT3 340 aa11.27□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Cabp2Q9JLK4 216 aa11.27□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Kif27Q7M6Z4 1394 aa11.27□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Spaca1Q9DA48 305 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Mroh2aD3Z750 1679 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 BlmO88700 1416 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Setd5Q5XJV7 1441 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Pde8bE9Q4S1 865 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Mcm6P97311 821 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Dpp9Q8BVG4 862 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Ift57Q8BXG3 429 aa11.26□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Plekhd1B2RPU2 505 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 A0A1W2P6Q8 802 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Gm9048A0A1W2P7H4 802 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 A0A1W2P7Z8 802 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Gm9046A0A1W2P855 802 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 BegainQ68EF6 600 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Methig1Q76I26 264 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Zcchc8Q9CYA6 709 aaKnown RBP11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Arl10Q9QXJ4 243 aa11.25□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Ncoa2Q61026 1462 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Fancd2Q80V62 1450 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Fndc1E9Q043 1732 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Rapgef6Q5NCJ1 1609 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Ccer2J3QPU5 274 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Bend7Q8BSV3 434 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 CgasQ8C6L5 507 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Q8VDP2 222 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 4933428M09RikQ9D3X3 192 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Prom2Q3UUY6 835 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Nyap1Q6PFX7 833 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Dnajc5gQ8C632 165 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Tfip11Q9ERA6 838 aaKnown RBP11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Stk11Q9WTK7 436 aa11.24□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Gcc2Q8CHG3 1679 aa11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 KnstrnQ9D9Z1 312 aaKnown RBP11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Acin1Q9JIX8 1338 aaKnown RBP11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 AglF8VPN4 1532 aa11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Map7d1A2AJI0 846 aa11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Tshz3Q8CGV9 1081 aa11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Smc3Q9CW03 1217 aaKnown RBP11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Pes1Q9EQ61 584 aaKnown RBP11.23□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Arhgef11Q68FM7 1552 aa11.22□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Magi1Q6RHR9 1471 aa11.22□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Ampd3O08739 766 aa11.22□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Ccdc34Q3UI66 367 aa11.22□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Npm3Q9CPP0 175 aaKnown RBP11.22□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Zbtb3Q91X45 518 aa11.21□□□□□ -0.61
Upf3b-201ENSMUST00000076265 Tpp2Q64514 1262 aa11.21□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Ptcd1Q8C2E4 695 aaKnown RBP11.21□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Zcrb1Q9CZ96 217 aaKnown RBP11.21□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Kiaa1210E9Q0C6 1637 aa11.21□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Arap1Q4LDD4 1452 aa11.21□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Abca8bQ8K440 1620 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Traf1P39428 409 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Vil1Q62468 827 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Trmt6Q8CE96 497 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Znf467Q8JZL0 594 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Bclaf1Q8K019 919 aaKnown RBP11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Ttc1Q91Z38 292 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Ncoa3O09000 1398 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Eea1Q8BL66 1411 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Evi5lH3BKQ3 813 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Pde4dQ01063 747 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Cracr2bQ80ZJ8 394 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 CerkQ8K4Q7 531 aa11.2□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Ccser2Q3UHI0 833 aa11.19□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Tmed1Q3V009 227 aa11.19□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Klra8Q60682 266 aa11.19□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Gm4985A2ALC6 410 aa11.19□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Lmo7E9PYF4 1699 aaKnown RBP11.19□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Ubxn4Q8VCH8 506 aa11.19□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Nol7Q9D7Z3 254 aaKnown RBP11.19□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Camk4P08414 469 aa11.18□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Cdc37Q61081 379 aa11.18□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Erich3F6QRE9 1637 aa11.18□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Pde4bB1AWC9 736 aa11.18□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Rcan1Q9JHG6 198 aa11.18□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Map2k5Q9WVS7 448 aa11.18□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Dusp27Q148W8 1138 aa11.17□□□□□ -0.62
Upf3b-201ENSMUST00000076265 GorabQ8BRM2 368 aa11.17□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Slc4a7Q8BTY2 1034 aa11.17□□□□□ -0.62
Upf3b-201ENSMUST00000076265 Senp7Q8BUH8 1037 aa11.17□□□□□ -0.62
Retrieved 100 of 22,080 RNA–protein pairs in 37.5 ms