Protein–RNA interactions for Protein: Q99PP7

Trim33, E3 ubiquitin-protein ligase TRIM33, mousemouse

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim33Q99PP7 Gm25239-201ENSMUST00000174915 86 ntBASIC36.4■■■■□ 3.42
Trim33Q99PP7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
Trim33Q99PP7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Trim33Q99PP7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
Trim33Q99PP7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Trim33Q99PP7 Gm15042-201ENSMUST00000120212 883 ntBASIC32.16■■■□□ 2.74
Trim33Q99PP7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.99■■■□□ 2.71
Trim33Q99PP7 Gm15045-201ENSMUST00000117359 883 ntBASIC31.52■■■□□ 2.64
Trim33Q99PP7 Gm24109-201ENSMUST00000175489 103 ntBASIC31.39■■■□□ 2.62
Trim33Q99PP7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim33Q99PP7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Trim33Q99PP7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Trim33Q99PP7 Psd-208ENSMUST00000224556 2034 ntBASIC30.63■■■□□ 2.49
Trim33Q99PP7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.52■■■□□ 2.48
Trim33Q99PP7 Gm23366-201ENSMUST00000175022 89 ntBASIC30.45■■■□□ 2.47
Trim33Q99PP7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Trim33Q99PP7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim33Q99PP7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim33Q99PP7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Trim33Q99PP7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Trim33Q99PP7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Trim33Q99PP7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
Trim33Q99PP7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC29.94■■■□□ 2.38
Trim33Q99PP7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Trim33Q99PP7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC29.88■■■□□ 2.37
Trim33Q99PP7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
Trim33Q99PP7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.79■■■□□ 2.36
Trim33Q99PP7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Trim33Q99PP7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Trim33Q99PP7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC29.6■■■□□ 2.33
Trim33Q99PP7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Trim33Q99PP7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.49■■■□□ 2.31
Trim33Q99PP7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Trim33Q99PP7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.38■■■□□ 2.29
Trim33Q99PP7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Trim33Q99PP7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
Trim33Q99PP7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.02■■■□□ 2.24
Trim33Q99PP7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Trim33Q99PP7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Trim33Q99PP7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
Trim33Q99PP7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.86■■■□□ 2.21
Trim33Q99PP7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Trim33Q99PP7 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC28.75■■■□□ 2.19
Trim33Q99PP7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Trim33Q99PP7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Trim33Q99PP7 Gm25238-201ENSMUST00000174914 89 ntBASIC28.61■■■□□ 2.17
Trim33Q99PP7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.57■■■□□ 2.16
Trim33Q99PP7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Trim33Q99PP7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.54■■■□□ 2.16
Trim33Q99PP7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
Trim33Q99PP7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Trim33Q99PP7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
Trim33Q99PP7 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Trim33Q99PP7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Trim33Q99PP7 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.36■■■□□ 2.13
Trim33Q99PP7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Trim33Q99PP7 Gm27325-201ENSMUST00000175467 74 ntBASIC28.25■■■□□ 2.11
Trim33Q99PP7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Trim33Q99PP7 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28.16■■■□□ 2.1
Trim33Q99PP7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Trim33Q99PP7 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.09■■■□□ 2.09
Trim33Q99PP7 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.08■■■□□ 2.09
Trim33Q99PP7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Trim33Q99PP7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Trim33Q99PP7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.04■■■□□ 2.08
Trim33Q99PP7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Trim33Q99PP7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
Trim33Q99PP7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
Trim33Q99PP7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Trim33Q99PP7 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.89■■■□□ 2.06
Trim33Q99PP7 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Trim33Q99PP7 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Trim33Q99PP7 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.81■■■□□ 2.04
Trim33Q99PP7 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.79■■■□□ 2.04
Trim33Q99PP7 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Trim33Q99PP7 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.77■■■□□ 2.04
Trim33Q99PP7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Trim33Q99PP7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Trim33Q99PP7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC27.7■■■□□ 2.03
Trim33Q99PP7 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
Trim33Q99PP7 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC27.58■■■□□ 2
Trim33Q99PP7 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Trim33Q99PP7 Rab21-202ENSMUST00000218831 843 ntBASIC27.49■■□□□ 1.99
Trim33Q99PP7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Trim33Q99PP7 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Trim33Q99PP7 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Trim33Q99PP7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Trim33Q99PP7 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC27.35■■□□□ 1.97
Trim33Q99PP7 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Trim33Q99PP7 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.27■■□□□ 1.96
Trim33Q99PP7 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Trim33Q99PP7 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Trim33Q99PP7 Gm25262-201ENSMUST00000174934 133 ntBASIC27.21■■□□□ 1.95
Trim33Q99PP7 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
Trim33Q99PP7 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
Trim33Q99PP7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.19■■□□□ 1.94
Trim33Q99PP7 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Trim33Q99PP7 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Trim33Q99PP7 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC27.13■■□□□ 1.93
Trim33Q99PP7 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Retrieved 100 of 76,532 protein–RNA pairs in 383.3 ms