RNA–Protein interactions for RNA: YLR378C

SEC61, Transcript of Conserved ER protein translocation channel, yeast

Gene SEC61, Length 1,443 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC61	YLR378C	ASF1	P32447	279 aa		10.44	□□□□□ -0.74
SEC61	YLR378C	RSC1	P53236	928 aa		10.44	□□□□□ -0.74
SEC61	YLR378C	FRS2	P15625	503 aa	Known RBP	10.43	□□□□□ -0.74
SEC61	YLR378C	KNS1	P32350	737 aa	Predicted RBP	10.43	□□□□□ -0.74
SEC61	YLR378C	RXT2	P38255	430 aa		10.43	□□□□□ -0.74
SEC61	YLR378C	CSM2	P40465	213 aa		10.43	□□□□□ -0.74
SEC61	YLR378C	CEX1	Q12453	761 aa		10.43	□□□□□ -0.74
SEC61	YLR378C	DDP1	Q99321	188 aa	Known RBP	10.43	□□□□□ -0.74
SEC61	YLR378C	SRM1	P21827	482 aa		10.42	□□□□□ -0.74
SEC61	YLR378C	MBR1	P23493	339 aa		10.42	□□□□□ -0.74
SEC61	YLR378C	PRO3	P32263	286 aa	Known RBP	10.42	□□□□□ -0.74
SEC61	YLR378C	GLC3	P32775	704 aa		10.42	□□□□□ -0.74
SEC61	YLR378C	LCD1	Q04377	747 aa		10.42	□□□□□ -0.74
SEC61	YLR378C	YPR148C	Q06523	435 aa		10.42	□□□□□ -0.74
SEC61	YLR378C	YDL124W	Q07551	312 aa	Known RBP	10.42	□□□□□ -0.74
SEC61	YLR378C	NBL1	Q3E7Y6	73 aa		10.42	□□□□□ -0.74
SEC61	YLR378C	YOR111W	Q99210	232 aa		10.42	□□□□□ -0.74
SEC61	YLR378C	HXK1	P04806	485 aa	Known RBP	10.41	□□□□□ -0.74
SEC61	YLR378C	RGP1	P16664	663 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	ADP1	P25371	1049 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	YBL028C	P38202	106 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	RFT1	P38206	574 aa	Predicted RBP	10.41	□□□□□ -0.74
SEC61	YLR378C	SLI15	P38283	698 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	MTC3	P53077	123 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	FOL1	P53848	824 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	KRE33	P53914	1056 aa	Known RBP	10.41	□□□□□ -0.74
SEC61	YLR378C	TIM50	Q02776	476 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	YDR341C	Q05506	607 aa	Known RBP	10.41	□□□□□ -0.74
SEC61	YLR378C	GSC2	P40989	1895 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	TAF13	P11747	167 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	TOM71	P38825	639 aa	Known RBP	10.41	□□□□□ -0.74
SEC61	YLR378C	PCI8	P40512	444 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	SNU71	P53207	620 aa	Known RBP	10.41	□□□□□ -0.74
SEC61	YLR378C	CSC1	Q06538	782 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	GET3	Q12154	354 aa	Known RBP	10.41	□□□□□ -0.74
SEC61	YLR378C	AIM7	Q12156	149 aa		10.41	□□□□□ -0.74
SEC61	YLR378C	CIT1	P00890	479 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	PMA1	P05030	918 aa	Known RBP	10.4	□□□□□ -0.75
SEC61	YLR378C	MET6	P05694	767 aa	Known RBP	10.4	□□□□□ -0.75
SEC61	YLR378C	KIN1	P13185	1064 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	ACE2	P21192	770 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	CST26	P38226	397 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	VPS4	P52917	437 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	NAF1	P53919	492 aa	Known RBP	10.4	□□□□□ -0.75
SEC61	YLR378C	VPS30	Q02948	557 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	SKG3	Q06315	1026 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	DCS2	Q12123	353 aa		10.4	□□□□□ -0.75
SEC61	YLR378C	CDC6	P09119	513 aa		10.39	□□□□□ -0.75
SEC61	YLR378C	HPR1	P17629	752 aa	Known RBP	10.39	□□□□□ -0.75
SEC61	YLR378C	SEC20	P28791	383 aa		10.39	□□□□□ -0.75
SEC61	YLR378C	STV1	P37296	890 aa		10.39	□□□□□ -0.75
SEC61	YLR378C	RKM3	P38222	552 aa		10.39	□□□□□ -0.75
SEC61	YLR378C	UTP7	P40055	554 aa	Known RBP	10.39	□□□□□ -0.75
SEC61	YLR378C	YGR117C	P53270	476 aa		10.39	□□□□□ -0.75
SEC61	YLR378C	TRS33	Q99394	268 aa		10.39	□□□□□ -0.75
SEC61	YLR378C	NUC1	P08466	329 aa		10.38	□□□□□ -0.75
SEC61	YLR378C	YKT6	P36015	200 aa	Known RBP	10.38	□□□□□ -0.75
SEC61	YLR378C	NPR3	P38742	1146 aa		10.38	□□□□□ -0.75
SEC61	YLR378C	FET4	P40988	552 aa		10.38	□□□□□ -0.75
SEC61	YLR378C	YPT11	P48559	417 aa		10.38	□□□□□ -0.75
SEC61	YLR378C	MDM1	Q01846	1127 aa		10.38	□□□□□ -0.75
SEC61	YLR378C	SGD1	Q06132	899 aa		10.38	□□□□□ -0.75
SEC61	YLR378C	DSE3	Q08729	430 aa		10.38	□□□□□ -0.75
SEC61	YLR378C	CBP1	P07252	654 aa		10.37	□□□□□ -0.75
SEC61	YLR378C	VPS1	P21576	704 aa	Known RBP	10.37	□□□□□ -0.75
SEC61	YLR378C	RAD53	P22216	821 aa		10.37	□□□□□ -0.75
SEC61	YLR378C	CHS3	P29465	1165 aa		10.37	□□□□□ -0.75
SEC61	YLR378C	VPS45	P38932	577 aa		10.37	□□□□□ -0.75
SEC61	YLR378C	NIT1	P40447	199 aa		10.37	□□□□□ -0.75
SEC61	YLR378C	GAP1	P19145	602 aa	Predicted RBP	10.36	□□□□□ -0.75
SEC61	YLR378C	YER130C	P39959	443 aa		10.36	□□□□□ -0.75
SEC61	YLR378C	RTC4	P53850	401 aa		10.36	□□□□□ -0.75
SEC61	YLR378C	TIP41	Q12199	356 aa		10.36	□□□□□ -0.75
SEC61	YLR378C	GPA1	P08539	472 aa		10.35	□□□□□ -0.75
SEC61	YLR378C	MIC60	P36112	540 aa		10.35	□□□□□ -0.75
SEC61	YLR378C	CCT3	P39077	534 aa	Known RBP	10.35	□□□□□ -0.75
SEC61	YLR378C	TPM2	P40414	161 aa		10.35	□□□□□ -0.75
SEC61	YLR378C	YGL138C	P53122	345 aa		10.35	□□□□□ -0.75
SEC61	YLR378C	GIS4	Q04233	774 aa		10.35	□□□□□ -0.75
SEC61	YLR378C	YOR296W	Q08748	1289 aa		10.35	□□□□□ -0.75
SEC61	YLR378C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	10.35	□□□□□ -0.75	not detected
SEC61	YLR378C	RPL22A	P05749	121 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	SSA1	P10591	642 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	GAL2	P13181	574 aa		10.34	□□□□□ -0.75
SEC61	YLR378C	STI1	P15705	589 aa	Known RBP RIP-Chip data	10.34	□□□□□ -0.75	not detected
SEC61	YLR378C	SRP54	P20424	541 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	MAK11	P20484	414 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	SAS3	P34218	831 aa		10.34	□□□□□ -0.75
SEC61	YLR378C	TPS3	P38426	1054 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	RRM3	P38766	723 aa		10.34	□□□□□ -0.75
SEC61	YLR378C	VMS1	Q04311	632 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	EIS1	Q05050	843 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	SMD2	Q06217	110 aa	Known RBP	10.34	□□□□□ -0.75
SEC61	YLR378C	LAP2	Q10740	671 aa		10.34	□□□□□ -0.75
SEC61	YLR378C	MCM3	P24279	971 aa	Known RBP	10.33	□□□□□ -0.76
SEC61	YLR378C	RTG2	P32608	588 aa	Known RBP	10.33	□□□□□ -0.76
SEC61	YLR378C	KEL1	P38853	1164 aa	Known RBP	10.33	□□□□□ -0.76
SEC61	YLR378C	UBP9	P39967	754 aa		10.33	□□□□□ -0.76
SEC61	YLR378C	EMP47	P43555	445 aa		10.33	□□□□□ -0.76
SEC61	YLR378C	CUE3	P53137	624 aa	Known RBP	10.33	□□□□□ -0.76

Retrieved 100 of 5,963 RNA–protein pairs in 80.5 ms