RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W TRE1Q08919 783 aa5.64□□□□□ -1.51
UPF3YGR072W CTR9P89105 1077 aa5.63□□□□□ -1.51
UPF3YGR072W LPX1Q12405 387 aaKnown RBP5.63□□□□□ -1.51
UPF3YGR072W AIM3P38266 947 aaKnown RBP5.62□□□□□ -1.51
UPF3YGR072W PEX7P39108 375 aa5.62□□□□□ -1.51
UPF3YGR072W BOL3P39724 118 aa5.62□□□□□ -1.51
UPF3YGR072W MSH4P40965 878 aaPredicted RBP5.62□□□□□ -1.51
UPF3YGR072W YIG1Q08956 461 aa5.62□□□□□ -1.51
UPF3YGR072W ALT1P52893 592 aa5.61□□□□□ -1.51
UPF3YGR072W PRO1P32264 428 aa5.6□□□□□ -1.51
UPF3YGR072W ALG6Q12001 544 aaKnown RBP5.6□□□□□ -1.51
UPF3YGR072W YVC1Q12324 675 aa5.6□□□□□ -1.51
UPF3YGR072W COBP00163 385 aa5.59□□□□□ -1.51
UPF3YGR072W HTS1P07263 546 aaKnown RBP5.59□□□□□ -1.51
UPF3YGR072W NPR1P22211 790 aa5.58□□□□□ -1.52
UPF3YGR072W MRPL22P53881 309 aa5.58□□□□□ -1.52
UPF3YGR072W MEC3Q02574 474 aa5.58□□□□□ -1.52
UPF3YGR072W YDL177CQ12257 170 aa5.58□□□□□ -1.52
UPF3YGR072W RIM11P38615 370 aa5.57□□□□□ -1.52
UPF3YGR072W CMR1Q12510 522 aaKnown RBP5.57□□□□□ -1.52
UPF3YGR072W DUR3P33413 735 aa5.56□□□□□ -1.52
UPF3YGR072W NFS1P25374 497 aa5.55□□□□□ -1.52
UPF3YGR072W REI1P38344 393 aaPredicted RBP5.55□□□□□ -1.52
UPF3YGR072W PTC7P38797 343 aa5.55□□□□□ -1.52
UPF3YGR072W RIM8P53179 542 aa5.55□□□□□ -1.52
UPF3YGR072W UTP22P53254 1237 aaPredicted RBP5.54□□□□□ -1.52
UPF3YGR072W PRP5P21372 849 aaPredicted RBP5.53□□□□□ -1.52
UPF3YGR072W ELA1P53861 379 aaPredicted RBP5.53□□□□□ -1.52
UPF3YGR072W UFD2P54860 961 aa5.53□□□□□ -1.52
UPF3YGR072W RSC4Q02206 625 aa5.53□□□□□ -1.52
UPF3YGR072W SUB2Q07478 446 aaKnown RBP5.53□□□□□ -1.52
UPF3YGR072W TOD6P34219 525 aa5.52□□□□□ -1.53
UPF3YGR072W GLO3P38682 493 aaKnown RBP5.52□□□□□ -1.53
UPF3YGR072W GTS1P40956 396 aa5.52□□□□□ -1.53
UPF3YGR072W YGR045CP53229 120 aa5.52□□□□□ -1.53
UPF3YGR072W SMY2P32909 740 aaKnown RBP5.51□□□□□ -1.53
UPF3YGR072W ECM2P38241 364 aaKnown RBP5.51□□□□□ -1.53
UPF3YGR072W ETP1P38748 585 aaKnown RBP5.51□□□□□ -1.53
UPF3YGR072W QDR1P40475 563 aa5.5□□□□□ -1.53
UPF3YGR072W KAR5Q04746 504 aa5.5□□□□□ -1.53
UPF3YGR072W SOD2P00447 233 aa5.49□□□□□ -1.53
UPF3YGR072W YPL277CQ08989 487 aa5.49□□□□□ -1.53
UPF3YGR072W GSF2Q04697 403 aaKnown RBP5.48□□□□□ -1.53
UPF3YGR072W NNK1P36003 928 aa5.47□□□□□ -1.53
UPF3YGR072W ABZ1P37254 787 aaPredicted RBP5.47□□□□□ -1.53
UPF3YGR072W ATG1P53104 897 aa5.46□□□□□ -1.54
UPF3YGR072W PUS7Q08647 676 aaKnown RBP5.46□□□□□ -1.54
UPF3YGR072W RPS13P05756 151 aaKnown RBP5.45□□□□□ -1.54
UPF3YGR072W TY1A-LR4P0C2I8 440 aaKnown RBP5.45□□□□□ -1.54
UPF3YGR072W TY1A-DR6P0CX70 440 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-ER1P0CX71 440 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-LR2P0CX72 440 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-PLP0CX73 440 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-JR1P0CX74 440 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-LR3P0CX75 440 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-ML2P0CX76 440 aa5.45□□□□□ -1.54
UPF3YGR072W SAP155P43612 1002 aa5.45□□□□□ -1.54
UPF3YGR072W YNL011CP53980 444 aa5.45□□□□□ -1.54
UPF3YGR072W BSC2Q05611 235 aa5.45□□□□□ -1.54
UPF3YGR072W AVO1Q08236 1176 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-GR1Q12085 440 aa5.45□□□□□ -1.54
UPF3YGR072W TY1A-PR3Q6Q5H1 440 aaKnown RBP5.45□□□□□ -1.54
UPF3YGR072W TY1A-OLQ92392 440 aaKnown RBP5.45□□□□□ -1.54
UPF3YGR072W TAD3Q9URQ3 322 aa5.45□□□□□ -1.54
UPF3YGR072W ACF4P47129 309 aa5.44□□□□□ -1.54
UPF3YGR072W TPP1Q03796 238 aa5.44□□□□□ -1.54
UPF3YGR072W TRS120Q04183 1289 aa5.44□□□□□ -1.54
UPF3YGR072W FLP1P03870 423 aa5.43□□□□□ -1.54
UPF3YGR072W SHM2P37291 469 aaKnown RBP5.43□□□□□ -1.54
UPF3YGR072W RPL34AP87262 121 aaPredicted RBP5.43□□□□□ -1.54
UPF3YGR072W CLU1Q03690 1277 aaKnown RBP5.43□□□□□ -1.54
UPF3YGR072W MNL2Q12205 849 aa5.43□□□□□ -1.54
UPF3YGR072W YAF9P53930 226 aa5.42□□□□□ -1.54
UPF3YGR072W CDC55Q00362 526 aa5.42□□□□□ -1.54
UPF3YGR072W PMT7Q06644 662 aa5.42□□□□□ -1.54
UPF3YGR072W CTS1P29029 562 aa5.41□□□□□ -1.54
UPF3YGR072W ARL1P38116 183 aaKnown RBP5.41□□□□□ -1.54
UPF3YGR072W NMD3P38861 518 aaKnown RBP5.41□□□□□ -1.54
UPF3YGR072W NUT1P53114 1132 aa5.41□□□□□ -1.54
UPF3YGR072W TUB2P02557 457 aaKnown RBP5.4□□□□□ -1.54
UPF3YGR072W SAM35P14693 329 aa5.4□□□□□ -1.54
UPF3YGR072W SNO2P53823 222 aa5.4□□□□□ -1.54
UPF3YGR072W YLR358CO13565 187 aa5.39□□□□□ -1.55
UPF3YGR072W SLS1P42900 643 aa5.39□□□□□ -1.55
UPF3YGR072W PRE10P21242 288 aaKnown RBP RIP-Chip data5.38□□□□□ -1.55not detected
UPF3YGR072W MCM5P29496 775 aaKnown RBP5.38□□□□□ -1.55
UPF3YGR072W YHL012WP38709 493 aa5.38□□□□□ -1.55
UPF3YGR072W INP54Q08227 384 aaKnown RBP5.38□□□□□ -1.55
UPF3YGR072W PNS1Q12412 539 aa5.38□□□□□ -1.55
UPF3YGR072W TRL1P09880 827 aaKnown RBP5.37□□□□□ -1.55
UPF3YGR072W FOL2P51601 243 aaKnown RBP5.37□□□□□ -1.55
UPF3YGR072W RVS167P39743 482 aaKnown RBP5.36□□□□□ -1.55
UPF3YGR072W MON1P53129 644 aa5.36□□□□□ -1.55
UPF3YGR072W SSA1P10591 642 aaKnown RBP5.35□□□□□ -1.55
UPF3YGR072W YKL077WP36081 392 aa5.35□□□□□ -1.55
UPF3YGR072W EXO5P38289 585 aa5.35□□□□□ -1.55
UPF3YGR072W YLR257WQ06146 321 aaKnown RBP5.35□□□□□ -1.55
UPF3YGR072W RET1P22276 1149 aaKnown RBP5.34□□□□□ -1.55
UPF3YGR072W MDL2P33311 773 aa5.34□□□□□ -1.55
UPF3YGR072W GRS1P38088 690 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 47.3 ms