RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 TRIM26Q12899 539 aaPredicted RBP11.3□□□□□ -0.6
CLK1-215ENST00000621181 DDB1Q16531 1140 aa11.3□□□□□ -0.6
CLK1-215ENST00000621181 BRD4O60885 1362 aaPredicted RBP11.29□□□□□ -0.6
CLK1-215ENST00000621181 CABP1Q9NZU7 370 aa11.29□□□□□ -0.6
CLK1-215ENST00000621181 U3KPZ7 1027 aaPredicted RBP11.29□□□□□ -0.6
CLK1-215ENST00000621181 USP6P35125 1406 aa11.29□□□□□ -0.6
CLK1-215ENST00000621181 AATKQ6ZMQ8 1374 aa11.29□□□□□ -0.6
CLK1-215ENST00000621181 NINLQ9Y2I6 1382 aa11.28□□□□□ -0.6
CLK1-215ENST00000621181 PLSCR1O15162 318 aa11.28□□□□□ -0.6
CLK1-215ENST00000621181 LRRC37A3O60309 1634 aa11.28□□□□□ -0.6
CLK1-215ENST00000621181 UTRNP46939 3433 aa11.27□□□□□ -0.61
CLK1-215ENST00000621181 QRICH2Q9H0J4 1663 aa11.27□□□□□ -0.61
CLK1-215ENST00000621181 PEAK1Q9H792 1746 aa11.26□□□□□ -0.61
CLK1-215ENST00000621181 BCL11BQ9C0K0 894 aaPredicted RBP11.26□□□□□ -0.61
CLK1-215ENST00000621181 ANO8Q9HCE9 1232 aaPredicted RBP11.26□□□□□ -0.61
CLK1-215ENST00000621181 RGPD3A6NKT7 1758 aaPredicted RBP11.26□□□□□ -0.61
CLK1-215ENST00000621181 RGPD4Q7Z3J3 1758 aa11.26□□□□□ -0.61
CLK1-215ENST00000621181 SBF2Q86WG5 1849 aa11.26□□□□□ -0.61
CLK1-215ENST00000621181 SLIT3O75094 1523 aa11.26□□□□□ -0.61
CLK1-215ENST00000621181 SOX12O15370 315 aa11.25□□□□□ -0.61
CLK1-215ENST00000621181 CSB-PGBD3P0DP91 1061 aa11.25□□□□□ -0.61
CLK1-215ENST00000621181 WDR17Q8IZU2 1322 aa11.25□□□□□ -0.61
CLK1-215ENST00000621181 PTF1AQ7RTS3 328 aa11.25□□□□□ -0.61
CLK1-215ENST00000621181 CDCA7Q9BWT1 371 aaPredicted RBP11.25□□□□□ -0.61
CLK1-215ENST00000621181 AXIN2Q9Y2T1 843 aa11.25□□□□□ -0.61
CLK1-215ENST00000621181 EVC2Q86UK5 1308 aa11.25□□□□□ -0.61
CLK1-215ENST00000621181 CPSF1Q10570 1443 aaKnown RBP11.25□□□□□ -0.61
CLK1-215ENST00000621181 PIK3C2AO00443 1686 aa11.24□□□□□ -0.61
CLK1-215ENST00000621181 FOXD4L1Q9NU39 408 aa11.24□□□□□ -0.61
CLK1-215ENST00000621181 AKAP12Q02952 1782 aa11.24□□□□□ -0.61
CLK1-215ENST00000621181 ZBTB7AO95365 584 aa11.23□□□□□ -0.61
CLK1-215ENST00000621181 MARCH10Q8NA82 808 aaPredicted RBP11.23□□□□□ -0.61
CLK1-215ENST00000621181 KCNH5Q8NCM2 988 aa11.23□□□□□ -0.61
CLK1-215ENST00000621181 ARHGEF25Q86VW2 580 aa11.23□□□□□ -0.61
CLK1-215ENST00000621181 PDGFDQ9GZP0 370 aaPredicted RBP11.23□□□□□ -0.61
CLK1-215ENST00000621181 COL18A1P39060 1754 aa11.22□□□□□ -0.61
CLK1-215ENST00000621181 PROM2Q8N271 834 aa11.22□□□□□ -0.61
CLK1-215ENST00000621181 ZNF692Q9BU19 519 aaPredicted RBP11.22□□□□□ -0.61
CLK1-215ENST00000621181 CARD10Q9BWT7 1032 aa11.22□□□□□ -0.61
CLK1-215ENST00000621181 WNK3Q9BYP7 1800 aa11.22□□□□□ -0.61
CLK1-215ENST00000621181 BCL9O00512 1426 aa11.21□□□□□ -0.61
CLK1-215ENST00000621181 EXOC5O00471 708 aa11.21□□□□□ -0.61
CLK1-215ENST00000621181 STK32BQ9NY57 414 aa11.21□□□□□ -0.61
CLK1-215ENST00000621181 CASZ1Q86V15 1759 aa11.21□□□□□ -0.61
CLK1-215ENST00000621181 TTC21BQ7Z4L5 1316 aa11.21□□□□□ -0.62
CLK1-215ENST00000621181 TXNRD1Q16881 649 aa11.21□□□□□ -0.62
CLK1-215ENST00000621181 ATF5Q9Y2D1 282 aaPredicted RBP11.21□□□□□ -0.62
CLK1-215ENST00000621181 RGPD5Q99666 1765 aa11.21□□□□□ -0.62
CLK1-215ENST00000621181 TTC21AQ8NDW8 1320 aa11.2□□□□□ -0.62
CLK1-215ENST00000621181 L3MBTL2Q969R5 705 aa11.2□□□□□ -0.62
CLK1-215ENST00000621181 TRPM1Q7Z4N2 1603 aa11.2□□□□□ -0.62
CLK1-215ENST00000621181 ROCK2O75116 1388 aaKnown RBP11.19□□□□□ -0.62
CLK1-215ENST00000621181 CCDC7Q96M83 1385 aa11.19□□□□□ -0.62
CLK1-215ENST00000621181 PTGER2P43116 358 aa11.19□□□□□ -0.62
CLK1-215ENST00000621181 SLC15A2Q16348 729 aa11.19□□□□□ -0.62
CLK1-215ENST00000621181 MYOM1P52179 1685 aa11.18□□□□□ -0.62
CLK1-215ENST00000621181 KTN1Q86UP2 1357 aaKnown RBP11.18□□□□□ -0.62
CLK1-215ENST00000621181 KAT6BQ8WYB5 2073 aa11.18□□□□□ -0.62
CLK1-215ENST00000621181 TNS2Q63HR2 1409 aa11.18□□□□□ -0.62
CLK1-215ENST00000621181 GOLGB1Q14789 3259 aaKnown RBP11.18□□□□□ -0.62
CLK1-215ENST00000621181 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLK1-215ENST00000621181 FHDC1Q9C0D6 1143 aaPredicted RBP11.17□□□□□ -0.62
CLK1-215ENST00000621181 MTFR1LQ9H019 292 aa11.17□□□□□ -0.62
CLK1-215ENST00000621181 NFAT5O94916 1531 aa11.17□□□□□ -0.62
CLK1-215ENST00000621181 ACSBG1Q96GR2 724 aa11.16□□□□□ -0.62
CLK1-215ENST00000621181 SYT17Q9BSW7 474 aa11.16□□□□□ -0.62
CLK1-215ENST00000621181 NLRP2Q9NX02 1062 aa11.16□□□□□ -0.62
CLK1-215ENST00000621181 ZNF784Q8NCA9 323 aaPredicted RBP11.16□□□□□ -0.62
CLK1-215ENST00000621181 ABCC6O95255 1503 aa11.16□□□□□ -0.62
CLK1-215ENST00000621181 ERBB3P21860 1342 aa11.15□□□□□ -0.62
CLK1-215ENST00000621181 IL2RBP14784 551 aa11.14□□□□□ -0.63
CLK1-215ENST00000621181 NHSQ6T4R5 1651 aa11.14□□□□□ -0.63
CLK1-215ENST00000621181 NEUROD1Q13562 356 aa11.14□□□□□ -0.63
CLK1-215ENST00000621181 SIN3AQ96ST3 1273 aa11.14□□□□□ -0.63
CLK1-215ENST00000621181 ARXQ96QS3 562 aa11.13□□□□□ -0.63
CLK1-215ENST00000621181 MON2Q7Z3U7 1717 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 C1QBPQ07021 282 aaKnown RBP11.12□□□□□ -0.63
CLK1-215ENST00000621181 NME9Q86XW9 330 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 TMC1Q8TDI8 760 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 ANKRD24Q8TF21 1146 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 SGIP1Q9BQI5 828 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 CHD4Q14839 1912 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 USP31Q70CQ4 1352 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 LTN1O94822 1766 aa11.12□□□□□ -0.63
CLK1-215ENST00000621181 CACNB1Q02641 598 aaPredicted RBP11.12□□□□□ -0.63
CLK1-215ENST00000621181 BTAF1O14981 1849 aa11.11□□□□□ -0.63
CLK1-215ENST00000621181 MYCNP04198 464 aaPredicted RBP11.11□□□□□ -0.63
CLK1-215ENST00000621181 HDGFL2Q7Z4V5 671 aaPredicted RBP11.11□□□□□ -0.63
CLK1-215ENST00000621181 SBNO2Q9Y2G9 1366 aa11.1□□□□□ -0.63
CLK1-215ENST00000621181 ZNF827Q17R98 1081 aa11.1□□□□□ -0.63
CLK1-215ENST00000621181 PAPPAQ13219 1627 aa11.09□□□□□ -0.63
CLK1-215ENST00000621181 GPR162Q16538 588 aa11.09□□□□□ -0.63
CLK1-215ENST00000621181 KLHL34Q8N239 644 aa11.09□□□□□ -0.63
CLK1-215ENST00000621181 LRRC4BQ9NT99 713 aa11.09□□□□□ -0.63
CLK1-215ENST00000621181 CD163L1Q9NR16 1453 aa11.09□□□□□ -0.63
CLK1-215ENST00000621181 DDX54Q8TDD1 881 aaKnown RBP11.09□□□□□ -0.63
CLK1-215ENST00000621181 CARD11Q9BXL7 1154 aa11.09□□□□□ -0.63
CLK1-215ENST00000621181 SLC12A5Q9H2X9 1139 aa11.09□□□□□ -0.63
CLK1-215ENST00000621181 MAP3K5Q99683 1374 aa11.08□□□□□ -0.64
CLK1-215ENST00000621181 EDC4Q6P2E9 1401 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms