RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 NPHP3Q7Z494 1330 aa29.37■■■□□ 2.29
CCDC47-204ENST00000582252 IL16Q14005 1332 aa29.37■■■□□ 2.29
CCDC47-204ENST00000582252 RBM19Q9Y4C8 960 aaKnown RBP29.37■■■□□ 2.29
CCDC47-204ENST00000582252 EMILIN1Q9Y6C2 1016 aa29.37■■■□□ 2.29
CCDC47-204ENST00000582252 BRINP3Q76B58 766 aa29.35■■■□□ 2.29
CCDC47-204ENST00000582252 KRT28Q7Z3Y7 464 aa29.35■■■□□ 2.29
CCDC47-204ENST00000582252 ABTB2Q8N961 1025 aa29.34■■■□□ 2.29
CCDC47-204ENST00000582252 CT47B1P0C2W7 299 aaPredicted RBP29.34■■■□□ 2.29
CCDC47-204ENST00000582252 RSPH6AQ9H0K4 717 aa29.34■■■□□ 2.29
CCDC47-204ENST00000582252 ALS2Q96Q42 1657 aa29.33■■■□□ 2.29
CCDC47-204ENST00000582252 IL13P35225 146 aa29.32■■■□□ 2.28
CCDC47-204ENST00000582252 NLRP6P59044 892 aa29.32■■■□□ 2.28
CCDC47-204ENST00000582252 C20orf194Q5TEA3 1177 aa29.32■■■□□ 2.28
CCDC47-204ENST00000582252 RIPK4P57078 832 aa29.31■■■□□ 2.28
CCDC47-204ENST00000582252 FBLN1P23142 703 aa29.31■■■□□ 2.28
CCDC47-204ENST00000582252 XPCQ01831 940 aaPredicted RBP29.31■■■□□ 2.28
CCDC47-204ENST00000582252 PXDNQ92626 1479 aa29.3■■■□□ 2.28
CCDC47-204ENST00000582252 SBNO1A3KN83 1393 aa29.3■■■□□ 2.28
CCDC47-204ENST00000582252 BCAR3O75815 825 aa29.3■■■□□ 2.28
CCDC47-204ENST00000582252 PRKAR2BP31323 418 aa29.3■■■□□ 2.28
CCDC47-204ENST00000582252 PDE3AQ14432 1141 aa29.3■■■□□ 2.28
CCDC47-204ENST00000582252 TRIM35Q9UPQ4 493 aa29.3■■■□□ 2.28
CCDC47-204ENST00000582252 NHSL1Q5SYE7 1610 aa29.3■■■□□ 2.28
CCDC47-204ENST00000582252 CANXP27824 592 aaKnown RBP29.28■■■□□ 2.28
CCDC47-204ENST00000582252 RRS1Q15050 365 aaKnown RBP29.28■■■□□ 2.28
CCDC47-204ENST00000582252 RARSP54136 660 aaKnown RBP29.26■■■□□ 2.27
CCDC47-204ENST00000582252 CALD1Q05682 793 aaKnown RBP29.25■■■□□ 2.27
CCDC47-204ENST00000582252 ROBO1Q9Y6N7 1651 aa29.25■■■□□ 2.27
CCDC47-204ENST00000582252 NFE2L2Q16236 605 aa29.24■■■□□ 2.27
CCDC47-204ENST00000582252 NUTM2GQ5VZR2 741 aa29.24■■■□□ 2.27
CCDC47-204ENST00000582252 DDX17Q92841 729 aaKnown RBP29.24■■■□□ 2.27
CCDC47-204ENST00000582252 FANCIQ9NVI1 1328 aa29.24■■■□□ 2.27
CCDC47-204ENST00000582252 TNS3Q68CZ2 1445 aa29.24■■■□□ 2.27
CCDC47-204ENST00000582252 SLIT3O75094 1523 aa29.22■■■□□ 2.27
CCDC47-204ENST00000582252 HMOX1P09601 288 aa29.21■■■□□ 2.27
CCDC47-204ENST00000582252 LMOD3Q0VAK6 560 aa29.21■■■□□ 2.27
CCDC47-204ENST00000582252 SOS2Q07890 1332 aaPredicted RBP29.2■■■□□ 2.27
CCDC47-204ENST00000582252 LMOD2Q6P5Q4 547 aa29.2■■■□□ 2.27
CCDC47-204ENST00000582252 LTN1O94822 1766 aa29.2■■■□□ 2.27
CCDC47-204ENST00000582252 ARHGEF10O15013 1369 aa29.19■■■□□ 2.26
CCDC47-204ENST00000582252 KCNH5Q8NCM2 988 aa29.19■■■□□ 2.26
CCDC47-204ENST00000582252 NFAT5O94916 1531 aa29.19■■■□□ 2.26
CCDC47-204ENST00000582252 USP19O94966 1318 aa29.18■■■□□ 2.26
CCDC47-204ENST00000582252 SPATA31A3Q5VYP0 1347 aa29.18■■■□□ 2.26
CCDC47-204ENST00000582252 TCERG1O14776 1098 aaKnown RBP29.18■■■□□ 2.26
CCDC47-204ENST00000582252 AAMPQ13685 434 aa29.18■■■□□ 2.26
CCDC47-204ENST00000582252 CENPQQ7L2Z9 268 aaPredicted RBP29.18■■■□□ 2.26
CCDC47-204ENST00000582252 PEAK1Q9H792 1746 aa29.18■■■□□ 2.26
CCDC47-204ENST00000582252 SOX12O15370 315 aa29.17■■■□□ 2.26
CCDC47-204ENST00000582252 AHDC1Q5TGY3 1603 aaPredicted RBP29.16■■■□□ 2.26
CCDC47-204ENST00000582252 KIF24Q5T7B8 1368 aa29.16■■■□□ 2.26
CCDC47-204ENST00000582252 TOM1O60784 492 aa29.16■■■□□ 2.26
CCDC47-204ENST00000582252 MAP3K19Q56UN5 1328 aa29.15■■■□□ 2.26
CCDC47-204ENST00000582252 MS4A1P11836 297 aa29.15■■■□□ 2.26
CCDC47-204ENST00000582252 MED1Q15648 1581 aaPredicted RBP29.15■■■□□ 2.26
CCDC47-204ENST00000582252 TSR2Q969E8 191 aaKnown RBP29.15■■■□□ 2.26
CCDC47-204ENST00000582252 PHRF1Q9P1Y6 1649 aaKnown RBP29.15■■■□□ 2.26
CCDC47-204ENST00000582252 EIF4A2Q14240 407 aaKnown RBP29.14■■■□□ 2.26
CCDC47-204ENST00000582252 FRAT1Q92837 279 aaPredicted RBP29.14■■■□□ 2.26
CCDC47-204ENST00000582252 DLG5Q8TDM6 1919 aa29.14■■■□□ 2.26
CCDC47-204ENST00000582252 RGPD1P0DJD0 1748 aa29.14■■■□□ 2.26
CCDC47-204ENST00000582252 EXOSC9Q06265 439 aaKnown RBP29.14■■■□□ 2.25
CCDC47-204ENST00000582252 CRYBG1Q9Y4K1 1723 aa29.13■■■□□ 2.25
CCDC47-204ENST00000582252 PHACTR3Q96KR7 559 aa29.13■■■□□ 2.25
CCDC47-204ENST00000582252 FLT4P35916 1363 aa29.13■■■□□ 2.25
CCDC47-204ENST00000582252 KDM2BQ8NHM5 1336 aa29.13■■■□□ 2.25
CCDC47-204ENST00000582252 RTL1A6NKG5 1358 aa29.1■■■□□ 2.25
CCDC47-204ENST00000582252 GCP02774 474 aa29.1■■■□□ 2.25
CCDC47-204ENST00000582252 ZNF428Q96B54 188 aa29.1■■■□□ 2.25
CCDC47-204ENST00000582252 GNAI1P63096 354 aa29.09■■■□□ 2.25
CCDC47-204ENST00000582252 AMPHP49418 695 aa29.08■■■□□ 2.25
CCDC47-204ENST00000582252 ZKSCAN2Q63HK3 967 aa29.08■■■□□ 2.25
CCDC47-204ENST00000582252 IFT57Q9NWB7 429 aa29.08■■■□□ 2.25
CCDC47-204ENST00000582252 SMC4Q9NTJ3 1288 aa29.06■■■□□ 2.24
CCDC47-204ENST00000582252 SULT6B1Q6IMI4 303 aa29.06■■■□□ 2.24
CCDC47-204ENST00000582252 PANK1Q8TE04 598 aa29.06■■■□□ 2.24
CCDC47-204ENST00000582252 PHLPP1O60346 1717 aa29.05■■■□□ 2.24
CCDC47-204ENST00000582252 ALDH1L2Q3SY69 923 aa29.05■■■□□ 2.24
CCDC47-204ENST00000582252 HSP90AB2PQ58FF8 381 aa29.05■■■□□ 2.24
CCDC47-204ENST00000582252 CLUAP1Q96AJ1 413 aa29.05■■■□□ 2.24
CCDC47-204ENST00000582252 BCL2L13Q9BXK5 485 aa29.05■■■□□ 2.24
CCDC47-204ENST00000582252 COG6Q9Y2V7 657 aa29.05■■■□□ 2.24
CCDC47-204ENST00000582252 ABCA3Q99758 1704 aa29.04■■■□□ 2.24
CCDC47-204ENST00000582252 UBAP1LF5GYI3 381 aa29.04■■■□□ 2.24
CCDC47-204ENST00000582252 CERKQ8TCT0 537 aa29.04■■■□□ 2.24
CCDC47-204ENST00000582252 KIF16BQ96L93 1317 aa29.03■■■□□ 2.24
CCDC47-204ENST00000582252 HOXC9P31274 260 aa29.02■■■□□ 2.24
CCDC47-204ENST00000582252 ARHGEF25Q86VW2 580 aa29.01■■■□□ 2.23
CCDC47-204ENST00000582252 FTSJ3Q8IY81 847 aaKnown RBP29.01■■■□□ 2.23
CCDC47-204ENST00000582252 LAS1LQ9Y4W2 734 aaKnown RBP29.01■■■□□ 2.23
CCDC47-204ENST00000582252 PLEKHG5O94827 1062 aa29■■■□□ 2.23
CCDC47-204ENST00000582252 LRRC59Q96AG4 307 aaKnown RBP29■■■□□ 2.23
CCDC47-204ENST00000582252 IPO8O15397 1037 aaKnown RBP29■■■□□ 2.23
CCDC47-204ENST00000582252 DZIP1LQ8IYY4 767 aaKnown RBP29■■■□□ 2.23
CCDC47-204ENST00000582252 COL16A1Q07092 1604 aaPredicted RBP28.99■■■□□ 2.23
CCDC47-204ENST00000582252 ZNF853P0CG23 659 aa28.99■■■□□ 2.23
CCDC47-204ENST00000582252 SSH1Q8WYL5 1049 aa28.99■■■□□ 2.23
CCDC47-204ENST00000582252 IP6K1Q92551 441 aa28.99■■■□□ 2.23
CCDC47-204ENST00000582252 ABCC6O95255 1503 aa28.98■■■□□ 2.23
CCDC47-204ENST00000582252 PIP4K2BP78356 416 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms