RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	IQSEC2	Q5JU85	1478 aa		18.42	■□□□□ 0.54
PRPF8-216	ENST00000577001	MCTP1	Q6DN14	999 aa		18.42	■□□□□ 0.54
PRPF8-216	ENST00000577001	ABCC11	Q96J66	1382 aa		18.42	■□□□□ 0.54
PRPF8-216	ENST00000577001	RIMBP3C	A6NJZ7	1639 aa		18.42	■□□□□ 0.54
PRPF8-216	ENST00000577001	RIMBP3B	A6NNM3	1639 aa		18.42	■□□□□ 0.54
PRPF8-216	ENST00000577001	RIMBP3	Q9UFD9	1639 aa		18.42	■□□□□ 0.54
PRPF8-216	ENST00000577001	PPIP5K1	Q6PFW1	1433 aa		18.42	■□□□□ 0.54
PRPF8-216	ENST00000577001	SLC52A1	Q9NWF4	448 aa		18.41	■□□□□ 0.54
PRPF8-216	ENST00000577001	POGZ	Q7Z3K3	1410 aa		18.41	■□□□□ 0.54
PRPF8-216	ENST00000577001	YTHDC2	Q9H6S0	1430 aa	Known RBP	18.41	■□□□□ 0.54
PRPF8-216	ENST00000577001	CFAP74	Q9C0B2	1584 aa		18.41	■□□□□ 0.54
PRPF8-216	ENST00000577001	ZGPAT	Q8N5A5	531 aa	Known RBP	18.41	■□□□□ 0.54
PRPF8-216	ENST00000577001	ADGRB1	O14514	1584 aa		18.41	■□□□□ 0.54
PRPF8-216	ENST00000577001	SHPRH	Q149N8	1683 aa		18.41	■□□□□ 0.54
PRPF8-216	ENST00000577001	IL13	P35225	146 aa		18.4	■□□□□ 0.54
PRPF8-216	ENST00000577001	GNAI1	P63096	354 aa		18.4	■□□□□ 0.54
PRPF8-216	ENST00000577001	RILPL2	Q969X0	211 aa		18.4	■□□□□ 0.54
PRPF8-216	ENST00000577001	SBNO2	Q9Y2G9	1366 aa		18.4	■□□□□ 0.54
PRPF8-216	ENST00000577001	DDX54	Q8TDD1	881 aa	Known RBP	18.4	■□□□□ 0.54
PRPF8-216	ENST00000577001	RBM27	Q9P2N5	1060 aa	Known RBP	18.4	■□□□□ 0.54
PRPF8-216	ENST00000577001	NINL	Q9Y2I6	1382 aa		18.39	■□□□□ 0.53
PRPF8-216	ENST00000577001	KIF2C	Q99661	725 aa		18.39	■□□□□ 0.53
PRPF8-216	ENST00000577001	DDX49	Q9Y6V7	483 aa	Known RBP	18.39	■□□□□ 0.53
PRPF8-216	ENST00000577001	ANXA1	P04083	346 aa		18.38	■□□□□ 0.53
PRPF8-216	ENST00000577001	GLI2	P10070	1586 aa		18.38	■□□□□ 0.53
PRPF8-216	ENST00000577001	WASL	O00401	505 aa	Predicted RBP	18.38	■□□□□ 0.53
PRPF8-216	ENST00000577001	TRIM6-TRIM34	B2RNG4	842 aa		18.37	■□□□□ 0.53
PRPF8-216	ENST00000577001	EIF4A2	Q14240	407 aa	Known RBP	18.37	■□□□□ 0.53
PRPF8-216	ENST00000577001	IL1RAPL2	Q9NP60	686 aa		18.37	■□□□□ 0.53
PRPF8-216	ENST00000577001	VWDE	Q8N2E2	1590 aa		18.37	■□□□□ 0.53
PRPF8-216	ENST00000577001	EIF2S2	P20042	333 aa	Known RBP	18.37	■□□□□ 0.53
PRPF8-216	ENST00000577001	L1TD1	Q5T7N2	865 aa	Known RBP	18.37	■□□□□ 0.53
PRPF8-216	ENST00000577001	ADGRB3	O60242	1522 aa		18.37	■□□□□ 0.53
PRPF8-216	ENST00000577001	CAMSAP1	Q5T5Y3	1602 aa		18.36	■□□□□ 0.53
PRPF8-216	ENST00000577001	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	18.36	■□□□□ 0.53
PRPF8-216	ENST00000577001	GRPEL1	Q9HAV7	217 aa		18.36	■□□□□ 0.53
PRPF8-216	ENST00000577001	PLEKHM2	Q8IWE5	1019 aa		18.36	■□□□□ 0.53
PRPF8-216	ENST00000577001	CAVIN1	Q6NZI2	390 aa	Known RBP	18.36	■□□□□ 0.53
PRPF8-216	ENST00000577001	LMOD2	Q6P5Q4	547 aa		18.36	■□□□□ 0.53
PRPF8-216	ENST00000577001	MET	P08581	1390 aa		18.35	■□□□□ 0.53
PRPF8-216	ENST00000577001	HECW2	Q9P2P5	1572 aa		18.35	■□□□□ 0.53
PRPF8-216	ENST00000577001	RNF214	Q8ND24	703 aa		18.35	■□□□□ 0.53
PRPF8-216	ENST00000577001	GDPD2	Q9HCC8	539 aa		18.35	■□□□□ 0.53
PRPF8-216	ENST00000577001	ABCC3	O15438	1527 aa		18.34	■□□□□ 0.53
PRPF8-216	ENST00000577001	ZNF692	Q9BU19	519 aa	Predicted RBP	18.34	■□□□□ 0.53
PRPF8-216	ENST00000577001	TSPYL4	Q9UJ04	414 aa		18.34	■□□□□ 0.53
PRPF8-216	ENST00000577001	SDS	P20132	328 aa		18.34	■□□□□ 0.53
PRPF8-216	ENST00000577001	UPF3B	Q9BZI7	483 aa	Known RBP	18.34	■□□□□ 0.53
PRPF8-216	ENST00000577001	PNN	Q9H307	717 aa	Known RBP	18.34	■□□□□ 0.53
PRPF8-216	ENST00000577001	MLH3	Q9UHC1	1453 aa		18.33	■□□□□ 0.53
PRPF8-216	ENST00000577001	FRMPD1	Q5SYB0	1578 aa		18.33	■□□□□ 0.53
PRPF8-216	ENST00000577001	TRIM44	Q96DX7	344 aa	Predicted RBP	18.33	■□□□□ 0.53
PRPF8-216	ENST00000577001	AK9	Q5TCS8	1911 aa		18.33	■□□□□ 0.53
PRPF8-216	ENST00000577001		K7ELQ4	463 aa	Predicted RBP	18.33	■□□□□ 0.52
PRPF8-216	ENST00000577001	NEO1	Q92859	1461 aa		18.33	■□□□□ 0.52
PRPF8-216	ENST00000577001	ERBB4	Q15303	1308 aa		18.33	■□□□□ 0.52
PRPF8-216	ENST00000577001	PRPF40A	O75400	957 aa	Known RBP	18.33	■□□□□ 0.52
PRPF8-216	ENST00000577001	NGDN	Q8NEJ9	315 aa	Known RBP	18.33	■□□□□ 0.52
PRPF8-216	ENST00000577001	CFAP44	Q96MT7	982 aa		18.33	■□□□□ 0.52
PRPF8-216	ENST00000577001	PRR36	Q9H6K5	1346 aa		18.32	■□□□□ 0.52
PRPF8-216	ENST00000577001	FAM43A	Q8N2R8	423 aa		18.32	■□□□□ 0.52
PRPF8-216	ENST00000577001	CCDC61	Q9Y6R9	512 aa		18.32	■□□□□ 0.52
PRPF8-216	ENST00000577001	CDC45	O75419	566 aa		18.32	■□□□□ 0.52
PRPF8-216	ENST00000577001	AMPH	P49418	695 aa		18.32	■□□□□ 0.52
PRPF8-216	ENST00000577001	BMP2KL	Q5H9B9	411 aa		18.32	■□□□□ 0.52
PRPF8-216	ENST00000577001	FKBP5	Q13451	457 aa	Predicted RBP	18.31	■□□□□ 0.52
PRPF8-216	ENST00000577001	XPC	Q01831	940 aa	Predicted RBP	18.31	■□□□□ 0.52
PRPF8-216	ENST00000577001	ALDH1L2	Q3SY69	923 aa		18.31	■□□□□ 0.52
PRPF8-216	ENST00000577001	NRXN1	Q9ULB1	1477 aa		18.3	■□□□□ 0.52
PRPF8-216	ENST00000577001	RTF1	Q92541	710 aa	Known RBP	18.3	■□□□□ 0.52
PRPF8-216	ENST00000577001	ACE	P12821	1306 aa		18.3	■□□□□ 0.52
PRPF8-216	ENST00000577001	CD163L1	Q9NR16	1453 aa		18.3	■□□□□ 0.52
PRPF8-216	ENST00000577001	NUTM1	Q86Y26	1132 aa		18.29	■□□□□ 0.52
PRPF8-216	ENST00000577001	IFT57	Q9NWB7	429 aa		18.29	■□□□□ 0.52
PRPF8-216	ENST00000577001	SIGLEC1	Q9BZZ2	1709 aa		18.29	■□□□□ 0.52
PRPF8-216	ENST00000577001	MTHFSD	Q2M296	383 aa	Known RBP	18.29	■□□□□ 0.52
PRPF8-216	ENST00000577001	GBP4	Q96PP9	640 aa		18.29	■□□□□ 0.52
PRPF8-216	ENST00000577001	NEK4	P51957	841 aa		18.28	■□□□□ 0.52
PRPF8-216	ENST00000577001	GCC1	Q96CN9	775 aa		18.28	■□□□□ 0.52
PRPF8-216	ENST00000577001	API5	Q9BZZ5	524 aa	Known RBP	18.28	■□□□□ 0.52
PRPF8-216	ENST00000577001	ANO2	Q9NQ90	1003 aa		18.28	■□□□□ 0.52
PRPF8-216	ENST00000577001	MSH6	P52701	1360 aa		18.28	■□□□□ 0.52
PRPF8-216	ENST00000577001	CT47B1	P0C2W7	299 aa	Predicted RBP	18.27	■□□□□ 0.52
PRPF8-216	ENST00000577001	CCDC9	Q9Y3X0	531 aa	Known RBP	18.27	■□□□□ 0.52
PRPF8-216	ENST00000577001	LRRC7	Q96NW7	1537 aa		18.27	■□□□□ 0.52
PRPF8-216	ENST00000577001	TSPOAP1	O95153	1857 aa		18.27	■□□□□ 0.52
PRPF8-216	ENST00000577001	NSD2	O96028	1365 aa		18.27	■□□□□ 0.51
PRPF8-216	ENST00000577001	CEP85	Q6P2H3	762 aa		18.27	■□□□□ 0.51
PRPF8-216	ENST00000577001	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	18.26	■□□□□ 0.51
PRPF8-216	ENST00000577001	RBM25	P49756	843 aa	Known RBP	18.26	■□□□□ 0.51
PRPF8-216	ENST00000577001	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.26	■□□□□ 0.51
PRPF8-216	ENST00000577001	RICTOR	Q6R327	1708 aa		18.26	■□□□□ 0.51
PRPF8-216	ENST00000577001	DDX11L8	A8MPP1	907 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	NLRP6	P59044	892 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	TAOK2	Q9UL54	1235 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	NEXMIF	Q5QGS0	1516 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	PNMA6E	A0A0J9YXQ4	647 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	BAG4	O95429	457 aa	Known RBP	18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	TTC22	Q5TAA0	569 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	PTPRM	P28827	1452 aa		18.25	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms