RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	CROCC2	H7BZ55	1655 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	UGGT1	Q9NYU2	1555 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	NRDC	O43847	1150 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	MAP4K4	O95819	1239 aa	Predicted RBP	13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	SLC4A2	P04920	1241 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	RBSN	Q9H1K0	784 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	DIAPH3	Q9NSV4	1193 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	CYB5RL	Q6IPT4	315 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	FBXW7	Q969H0	707 aa		13.78	□□□□□ -0.2
CLN3-238	ENST00000569430	MAGI2	Q86UL8	1455 aa		13.78	□□□□□ -0.2
CLN3-238	ENST00000569430	ERBB4	Q15303	1308 aa		13.78	□□□□□ -0.2
CLN3-238	ENST00000569430	OSCAR	Q8IYS5	282 aa		13.78	□□□□□ -0.2
CLN3-238	ENST00000569430	FAM177B	A6PVY3	158 aa		13.78	□□□□□ -0.2
CLN3-238	ENST00000569430	RBM25	P49756	843 aa	Known RBP	13.77	□□□□□ -0.2
CLN3-238	ENST00000569430	NPHP1	O15259	732 aa		13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	CHAMP1	Q96JM3	812 aa		13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	KIF3A	Q9Y496	699 aa		13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	POLR3A	O14802	1390 aa	Predicted RBP	13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	FCHSD2	O94868	740 aa		13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	ALDH1L2	Q3SY69	923 aa		13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	TSPYL4	Q9UJ04	414 aa		13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	ZKSCAN5	Q9Y2L8	839 aa		13.77	□□□□□ -0.21
CLN3-238	ENST00000569430	GOLGA6L19	H0YKK7	550 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	HSP90B1	P14625	803 aa	Known RBP	13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	EIF2S2	P20042	333 aa	Known RBP	13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	BICD2	Q8TD16	824 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	PLCH2	O75038	1416 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	CHD1	O14646	1710 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	CD2BP2	O95400	341 aa	Known RBP	13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	MIS18A	Q9NYP9	233 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	SPDYE4	A6NLX3	237 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	BECN2	A8MW95	431 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	MCM2	P49736	904 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	IL1RAPL2	Q9NP60	686 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	ADCY10	Q96PN6	1610 aa		13.76	□□□□□ -0.21
CLN3-238	ENST00000569430	INSR	P06213	1382 aa		13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	RRS1	Q15050	365 aa	Known RBP	13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	NFE2L2	Q16236	605 aa		13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	TRIM5	Q9C035	493 aa		13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	LMOD2	Q6P5Q4	547 aa		13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	TSPYL6	Q8N831	410 aa		13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	SDS	P20132	328 aa		13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	TTC12	Q9H892	705 aa	Predicted RBP	13.75	□□□□□ -0.21
CLN3-238	ENST00000569430	FAM83G	A6ND36	823 aa		13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	FOSB	P53539	338 aa		13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	LRSAM1	Q6UWE0	723 aa		13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	CCDC9	Q9Y3X0	531 aa	Known RBP	13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	WDR33	Q9C0J8	1336 aa	Known RBP	13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	SURF6	O75683	361 aa	Known RBP	13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	AMPH	P49418	695 aa		13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	SULT6B1	Q6IMI4	303 aa		13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	DYNC1I1	O14576	645 aa		13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	DDX54	Q8TDD1	881 aa	Known RBP	13.74	□□□□□ -0.21
CLN3-238	ENST00000569430	PDCL2	Q8N4E4	241 aa		13.73	□□□□□ -0.21
CLN3-238	ENST00000569430	CDK19	Q9BWU1	502 aa		13.73	□□□□□ -0.21
CLN3-238	ENST00000569430		F6X3S4	739 aa		13.73	□□□□□ -0.21
CLN3-238	ENST00000569430	PKP1	Q13835	747 aa		13.73	□□□□□ -0.21
CLN3-238	ENST00000569430	TTC22	Q5TAA0	569 aa		13.73	□□□□□ -0.21
CLN3-238	ENST00000569430	IGSF3	O75054	1194 aa		13.73	□□□□□ -0.21
CLN3-238	ENST00000569430	HCLS1	P14317	486 aa	Predicted RBP	13.73	□□□□□ -0.21
CLN3-238	ENST00000569430	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.73	□□□□□ -0.21
CLN3-238	ENST00000569430	TSC1	Q92574	1164 aa		13.73	□□□□□ -0.21
CLN3-238	ENST00000569430		H3BQV1	296 aa		13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	IFFO2	Q5TF58	517 aa		13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	ZNF428	Q96B54	188 aa		13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	TMX3	Q96JJ7	454 aa		13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	ZKSCAN1	P17029	563 aa	Predicted RBP	13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	ADCY5	O95622	1261 aa		13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	EMILIN1	Q9Y6C2	1016 aa		13.72	□□□□□ -0.21
CLN3-238	ENST00000569430	TPD52L1	Q16890	204 aa	Predicted RBP	13.71	□□□□□ -0.21
CLN3-238	ENST00000569430	PPP4R3B	Q5MIZ7	849 aa		13.71	□□□□□ -0.21
CLN3-238	ENST00000569430	MCM10	Q7L590	875 aa		13.71	□□□□□ -0.21
CLN3-238	ENST00000569430	FERMT3	Q86UX7	667 aa		13.71	□□□□□ -0.21
CLN3-238	ENST00000569430	PREX2	Q70Z35	1606 aa		13.71	□□□□□ -0.21
CLN3-238	ENST00000569430	LRRCC1	Q9C099	1032 aa		13.71	□□□□□ -0.21
CLN3-238	ENST00000569430	FANCA	O15360	1455 aa		13.71	□□□□□ -0.21
CLN3-238	ENST00000569430	HTATSF1	O43719	755 aa	Known RBP	13.71	□□□□□ -0.22
CLN3-238	ENST00000569430	GNAI2	P04899	355 aa		13.71	□□□□□ -0.22
CLN3-238	ENST00000569430	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.71	□□□□□ -0.22
CLN3-238	ENST00000569430	MBIP	Q9NS73	344 aa		13.71	□□□□□ -0.22
CLN3-238	ENST00000569430	NOL7	Q9UMY1	257 aa	Known RBP	13.71	□□□□□ -0.22
CLN3-238	ENST00000569430	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.71	□□□□□ -0.22
CLN3-238	ENST00000569430	ABCC2	Q92887	1545 aa		13.71	□□□□□ -0.22
CLN3-238	ENST00000569430	CAMK4	Q16566	473 aa		13.7	□□□□□ -0.22
CLN3-238	ENST00000569430	GPATCH3	Q96I76	525 aa		13.7	□□□□□ -0.22
CLN3-238	ENST00000569430	TNNT3	P45378	269 aa	Predicted RBP	13.7	□□□□□ -0.22
CLN3-238	ENST00000569430	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.7	□□□□□ -0.22
CLN3-238	ENST00000569430	ARHGEF5	Q12774	1597 aa		13.7	□□□□□ -0.22
CLN3-238	ENST00000569430	ATAD2	Q6PL18	1390 aa		13.7	□□□□□ -0.22
CLN3-238	ENST00000569430	UBTFL1	P0CB47	393 aa	Predicted RBP	13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	PLEKHM2	Q8IWE5	1019 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	C8orf58	Q8NAV2	365 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	ABCC11	Q96J66	1382 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	ZBTB7B	O15156	539 aa	Predicted RBP	13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	DTNB	O60941	627 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	CEBPZ	Q03701	1054 aa	Known RBP	13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	FAM184A	Q8NB25	1140 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	MCM5	P33992	734 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	LMBRD1	Q9NUN5	540 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 107 ms