RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ATF5Q9Y2D1 282 aaPredicted RBP25.83■■□□□ 1.73
TSPAN3-208ENST00000560514 PDGFDQ9GZP0 370 aaPredicted RBP25.82■■□□□ 1.72
TSPAN3-208ENST00000560514 WDR17Q8IZU2 1322 aa25.82■■□□□ 1.72
TSPAN3-208ENST00000560514 WNK3Q9BYP7 1800 aa25.81■■□□□ 1.72
TSPAN3-208ENST00000560514 CSB-PGBD3P0DP91 1061 aa25.81■■□□□ 1.72
TSPAN3-208ENST00000560514 PTF1AQ7RTS3 328 aa25.81■■□□□ 1.72
TSPAN3-208ENST00000560514 CABP1Q9NZU7 370 aa25.81■■□□□ 1.72
TSPAN3-208ENST00000560514 SLIT3O75094 1523 aa25.81■■□□□ 1.72
TSPAN3-208ENST00000560514 MYOM1P52179 1685 aa25.8■■□□□ 1.72
TSPAN3-208ENST00000560514 USP6P35125 1406 aa25.8■■□□□ 1.72
TSPAN3-208ENST00000560514 NBPF1Q3BBV0 1214 aa25.8■■□□□ 1.72
TSPAN3-208ENST00000560514 MARCH10Q8NA82 808 aaPredicted RBP25.8■■□□□ 1.72
TSPAN3-208ENST00000560514 TXNRD1Q16881 649 aa25.79■■□□□ 1.72
TSPAN3-208ENST00000560514 PROM2Q8N271 834 aa25.79■■□□□ 1.72
TSPAN3-208ENST00000560514 ZNF784Q8NCA9 323 aaPredicted RBP25.79■■□□□ 1.72
TSPAN3-208ENST00000560514 BCL9O00512 1426 aa25.78■■□□□ 1.72
TSPAN3-208ENST00000560514 EXOC5O00471 708 aa25.77■■□□□ 1.72
TSPAN3-208ENST00000560514 PTGER2P43116 358 aa25.77■■□□□ 1.72
TSPAN3-208ENST00000560514 SLC15A2Q16348 729 aa25.77■■□□□ 1.72
TSPAN3-208ENST00000560514 FHDC1Q9C0D6 1143 aaPredicted RBP25.76■■□□□ 1.71
TSPAN3-208ENST00000560514 AXIN2Q9Y2T1 843 aa25.76■■□□□ 1.71
TSPAN3-208ENST00000560514 QRICH2Q9H0J4 1663 aa25.76■■□□□ 1.71
TSPAN3-208ENST00000560514 COL18A1P39060 1754 aa25.76■■□□□ 1.71
TSPAN3-208ENST00000560514 KCNH5Q8NCM2 988 aa25.75■■□□□ 1.71
TSPAN3-208ENST00000560514 SYT17Q9BSW7 474 aa25.75■■□□□ 1.71
TSPAN3-208ENST00000560514 CPSF1Q10570 1443 aaKnown RBP25.74■■□□□ 1.71
TSPAN3-208ENST00000560514 CARD10Q9BWT7 1032 aa25.74■■□□□ 1.71
TSPAN3-208ENST00000560514 MTFR1LQ9H019 292 aa25.74■■□□□ 1.71
TSPAN3-208ENST00000560514 CHD4Q14839 1912 aa25.74■■□□□ 1.71
TSPAN3-208ENST00000560514 SOX12O15370 315 aa25.73■■□□□ 1.71
TSPAN3-208ENST00000560514 PIK3C2AO00443 1686 aa25.73■■□□□ 1.71
TSPAN3-208ENST00000560514 RGPD5Q99666 1765 aa25.72■■□□□ 1.71
TSPAN3-208ENST00000560514 ARHGEF25Q86VW2 580 aa25.71■■□□□ 1.71
TSPAN3-208ENST00000560514 EVC2Q86UK5 1308 aa25.7■■□□□ 1.71
TSPAN3-208ENST00000560514 UTRNP46939 3433 aa25.7■■□□□ 1.7
TSPAN3-208ENST00000560514 SENP3-EIF4A1A0A087X0R7 540 aa25.69■■□□□ 1.7
TSPAN3-208ENST00000560514 ZNF692Q9BU19 519 aaPredicted RBP25.69■■□□□ 1.7
TSPAN3-208ENST00000560514 CCDC7Q96M83 1385 aa25.69■■□□□ 1.7
TSPAN3-208ENST00000560514 TTC21BQ7Z4L5 1316 aa25.66■■□□□ 1.7
TSPAN3-208ENST00000560514 ARXQ96QS3 562 aa25.66■■□□□ 1.7
TSPAN3-208ENST00000560514 KAT6BQ8WYB5 2073 aa25.65■■□□□ 1.7
TSPAN3-208ENST00000560514 TNS2Q63HR2 1409 aa25.64■■□□□ 1.7
TSPAN3-208ENST00000560514 TTC21AQ8NDW8 1320 aa25.63■■□□□ 1.69
TSPAN3-208ENST00000560514 ACSBG1Q96GR2 724 aa25.63■■□□□ 1.69
TSPAN3-208ENST00000560514 NHSQ6T4R5 1651 aa25.63■■□□□ 1.69
TSPAN3-208ENST00000560514 C1QTNF8P60827 252 aa25.62■■□□□ 1.69
TSPAN3-208ENST00000560514 SGIP1Q9BQI5 828 aa25.62■■□□□ 1.69
TSPAN3-208ENST00000560514 TRPM1Q7Z4N2 1603 aa25.62■■□□□ 1.69
TSPAN3-208ENST00000560514 GPR162Q16538 588 aa25.6■■□□□ 1.69
TSPAN3-208ENST00000560514 ABCC6O95255 1503 aa25.58■■□□□ 1.69
TSPAN3-208ENST00000560514 NLRP2Q9NX02 1062 aa25.58■■□□□ 1.69
TSPAN3-208ENST00000560514 KLHL34Q8N239 644 aa25.57■■□□□ 1.68
TSPAN3-208ENST00000560514 NFAT5O94916 1531 aa25.57■■□□□ 1.68
TSPAN3-208ENST00000560514 KTN1Q86UP2 1357 aaKnown RBP25.56■■□□□ 1.68
TSPAN3-208ENST00000560514 MAP3K5Q99683 1374 aa25.56■■□□□ 1.68
TSPAN3-208ENST00000560514 IL2RBP14784 551 aa25.55■■□□□ 1.68
TSPAN3-208ENST00000560514 BTAF1O14981 1849 aa25.54■■□□□ 1.68
TSPAN3-208ENST00000560514 PAPPAQ13219 1627 aa25.53■■□□□ 1.68
TSPAN3-208ENST00000560514 POLD1P28340 1107 aa25.53■■□□□ 1.68
TSPAN3-208ENST00000560514 PELP1Q8IZL8 1130 aaKnown RBP25.52■■□□□ 1.68
TSPAN3-208ENST00000560514 ERBB3P21860 1342 aa25.52■■□□□ 1.68
TSPAN3-208ENST00000560514 GIGYF1O75420 1035 aaPredicted RBP25.51■■□□□ 1.67
TSPAN3-208ENST00000560514 ZNF827Q17R98 1081 aa25.51■■□□□ 1.67
TSPAN3-208ENST00000560514 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.51■■□□□ 1.67
TSPAN3-208ENST00000560514 SLC16A10Q8TF71 515 aa25.51■■□□□ 1.67
TSPAN3-208ENST00000560514 ROCK2O75116 1388 aaKnown RBP25.48■■□□□ 1.67
TSPAN3-208ENST00000560514 LTN1O94822 1766 aa25.48■■□□□ 1.67
TSPAN3-208ENST00000560514 SLC27A3Q5K4L6 730 aa25.47■■□□□ 1.67
TSPAN3-208ENST00000560514 ANKRD24Q8TF21 1146 aa25.47■■□□□ 1.67
TSPAN3-208ENST00000560514 L3MBTL2Q969R5 705 aa25.47■■□□□ 1.67
TSPAN3-208ENST00000560514 LRRC4BQ9NT99 713 aa25.47■■□□□ 1.67
TSPAN3-208ENST00000560514 MON2Q7Z3U7 1717 aa25.46■■□□□ 1.67
TSPAN3-208ENST00000560514 TFCP2L1Q9NZI6 479 aa25.45■■□□□ 1.66
TSPAN3-208ENST00000560514 USP31Q70CQ4 1352 aa25.44■■□□□ 1.66
TSPAN3-208ENST00000560514 QSER1Q2KHR3 1735 aa25.43■■□□□ 1.66
TSPAN3-208ENST00000560514 DDX54Q8TDD1 881 aaKnown RBP25.43■■□□□ 1.66
TSPAN3-208ENST00000560514 AKT1S1Q96B36 256 aa25.43■■□□□ 1.66
TSPAN3-208ENST00000560514 NME9Q86XW9 330 aa25.42■■□□□ 1.66
TSPAN3-208ENST00000560514 HDGFL2Q7Z4V5 671 aaPredicted RBP25.41■■□□□ 1.66
TSPAN3-208ENST00000560514 SYTL4Q96C24 671 aaPredicted RBP25.41■■□□□ 1.66
TSPAN3-208ENST00000560514 USP54Q70EL1 1684 aa25.4■■□□□ 1.66
TSPAN3-208ENST00000560514 TMC1Q8TDI8 760 aa25.4■■□□□ 1.66
TSPAN3-208ENST00000560514 PNPLA7Q6ZV29 1317 aa25.39■■□□□ 1.66
TSPAN3-208ENST00000560514 GRIN3BO60391 1043 aa25.37■■□□□ 1.65
TSPAN3-208ENST00000560514 IFFO2Q5TF58 517 aa25.37■■□□□ 1.65
TSPAN3-208ENST00000560514 MSH5O43196 834 aa25.36■■□□□ 1.65
TSPAN3-208ENST00000560514 GOLGB1Q14789 3259 aaKnown RBP25.36■■□□□ 1.65
TSPAN3-208ENST00000560514 COL24A1Q17RW2 1714 aa25.35■■□□□ 1.65
TSPAN3-208ENST00000560514 NLGN2Q8NFZ4 835 aa25.35■■□□□ 1.65
TSPAN3-208ENST00000560514 LTV1Q96GA3 475 aaPredicted RBP25.35■■□□□ 1.65
TSPAN3-208ENST00000560514 SBNO2Q9Y2G9 1366 aa25.34■■□□□ 1.65
TSPAN3-208ENST00000560514 FAM208AQ9UK61 1670 aaKnown RBP25.34■■□□□ 1.65
TSPAN3-208ENST00000560514 PRIM1P49642 420 aaKnown RBP25.34■■□□□ 1.65
TSPAN3-208ENST00000560514 KCNQ4P56696 695 aa25.34■■□□□ 1.65
TSPAN3-208ENST00000560514 TUBGCP6Q96RT7 1819 aa25.34■■□□□ 1.65
TSPAN3-208ENST00000560514 EDC4Q6P2E9 1401 aaKnown RBP25.32■■□□□ 1.64
TSPAN3-208ENST00000560514 NEUROD1Q13562 356 aa25.32■■□□□ 1.64
TSPAN3-208ENST00000560514 IP6K1Q92551 441 aa25.32■■□□□ 1.64
TSPAN3-208ENST00000560514 TERF2IPQ9NYB0 399 aa25.32■■□□□ 1.64
TSPAN3-208ENST00000560514 ANKRD36BQ8N2N9 1353 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms