RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SHPRHQ149N8 1683 aa15.41■□□□□ 0.06
LDLR-205ENST00000557933 NGEFQ8N5V2 710 aa15.41■□□□□ 0.06
LDLR-205ENST00000557933 OTUD7AQ8TE49 926 aaPredicted RBP15.41■□□□□ 0.06
LDLR-205ENST00000557933 KIF2CQ99661 725 aa15.41■□□□□ 0.06
LDLR-205ENST00000557933 ARHGEF28Q8N1W1 1705 aaKnown RBP15.41■□□□□ 0.06
LDLR-205ENST00000557933 CLCN1P35523 988 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 HDAC1Q13547 482 aaPredicted RBP15.4■□□□□ 0.06
LDLR-205ENST00000557933 MPNDQ8N594 471 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 DIP2AQ14689 1571 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 EVC2Q86UK5 1308 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 FYB1O15117 783 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 SLC24A1O60721 1099 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 NUCB1Q02818 461 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 HSP90AA2PQ14568 343 aaPredicted RBP15.4■□□□□ 0.06
LDLR-205ENST00000557933 KRT24Q2M2I5 525 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 FBXO31Q5XUX0 539 aaPredicted RBP15.4■□□□□ 0.06
LDLR-205ENST00000557933 A0A1W2PP64 1363 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 DLC1Q96QB1 1528 aa15.4■□□□□ 0.06
LDLR-205ENST00000557933 NOL8Q76FK4 1167 aaKnown RBP15.4■□□□□ 0.06
LDLR-205ENST00000557933 CEP170BQ9Y4F5 1589 aaPredicted RBP15.39■□□□□ 0.05
LDLR-205ENST00000557933 DDX11L8A8MPP1 907 aa15.39■□□□□ 0.05
LDLR-205ENST00000557933 ZRANB1Q9UGI0 708 aa15.39■□□□□ 0.05
LDLR-205ENST00000557933 DDX49Q9Y6V7 483 aaKnown RBP15.39■□□□□ 0.05
LDLR-205ENST00000557933 ALKQ9UM73 1620 aa15.39■□□□□ 0.05
LDLR-205ENST00000557933 RIMS2Q9UQ26 1411 aa15.39■□□□□ 0.05
LDLR-205ENST00000557933 SOX12O15370 315 aa15.38■□□□□ 0.05
LDLR-205ENST00000557933 PRAM1Q96QH2 718 aa15.38■□□□□ 0.05
LDLR-205ENST00000557933 AK9Q5TCS8 1911 aa15.38■□□□□ 0.05
LDLR-205ENST00000557933 SMARCA5O60264 1052 aaPredicted RBP15.38■□□□□ 0.05
LDLR-205ENST00000557933 DIAPH1O60610 1272 aaKnown RBP15.38■□□□□ 0.05
LDLR-205ENST00000557933 CCDC27Q2M243 656 aa15.38■□□□□ 0.05
LDLR-205ENST00000557933 MCTP1Q6DN14 999 aa15.38■□□□□ 0.05
LDLR-205ENST00000557933 SIRT2Q8IXJ6 389 aa15.38■□□□□ 0.05
LDLR-205ENST00000557933 RBM10P98175 930 aaKnown RBP15.37■□□□□ 0.05
LDLR-205ENST00000557933 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.37■□□□□ 0.05
LDLR-205ENST00000557933 CABP1Q9NZU7 370 aa15.37■□□□□ 0.05
LDLR-205ENST00000557933 SETD1BQ9UPS6 1966 aaKnown RBP15.37■□□□□ 0.05
LDLR-205ENST00000557933 DTNBO60941 627 aa15.37■□□□□ 0.05
LDLR-205ENST00000557933 MLECQ14165 292 aa15.37■□□□□ 0.05
LDLR-205ENST00000557933 CAVIN1Q6NZI2 390 aaKnown RBP15.36■□□□□ 0.05
LDLR-205ENST00000557933 RBM27Q9P2N5 1060 aaKnown RBP15.36■□□□□ 0.05
LDLR-205ENST00000557933 EMILIN1Q9Y6C2 1016 aa15.36■□□□□ 0.05
LDLR-205ENST00000557933 TSHZ3Q63HK5 1081 aa15.36■□□□□ 0.05
LDLR-205ENST00000557933 GBP4Q96PP9 640 aa15.35■□□□□ 0.05
LDLR-205ENST00000557933 NCKAP5LQ9HCH0 1330 aa15.35■□□□□ 0.05
LDLR-205ENST00000557933 TMEM2Q9UHN6 1383 aa15.35■□□□□ 0.05
LDLR-205ENST00000557933 QRICH2Q9H0J4 1663 aa15.35■□□□□ 0.05
LDLR-205ENST00000557933 K7ELQ4 463 aaPredicted RBP15.34■□□□□ 0.05
LDLR-205ENST00000557933 IPO8O15397 1037 aaKnown RBP15.34■□□□□ 0.05
LDLR-205ENST00000557933 RBM25P49756 843 aaKnown RBP15.34■□□□□ 0.05
LDLR-205ENST00000557933 HDGFP51858 240 aaKnown RBP15.34■□□□□ 0.05
LDLR-205ENST00000557933 RAB3GAP1Q15042 981 aa15.34■□□□□ 0.05
LDLR-205ENST00000557933 ZGPATQ8N5A5 531 aaKnown RBP15.34■□□□□ 0.05
LDLR-205ENST00000557933 GSPT1P15170 499 aaKnown RBP15.33■□□□□ 0.05
LDLR-205ENST00000557933 MED14O60244 1454 aa15.33■□□□□ 0.04
LDLR-205ENST00000557933 PPIP5K1Q6PFW1 1433 aa15.33■□□□□ 0.04
LDLR-205ENST00000557933 ZBTB7BO15156 539 aaPredicted RBP15.33■□□□□ 0.04
LDLR-205ENST00000557933 DDIT3P35638 169 aa15.33■□□□□ 0.04
LDLR-205ENST00000557933 NASPP49321 788 aaPredicted RBP15.33■□□□□ 0.04
LDLR-205ENST00000557933 RRS1Q15050 365 aaKnown RBP15.33■□□□□ 0.04
LDLR-205ENST00000557933 WAPLQ7Z5K2 1190 aa15.33■□□□□ 0.04
LDLR-205ENST00000557933 C8orf58Q8NAV2 365 aa15.33■□□□□ 0.04
LDLR-205ENST00000557933 NUTM2FA1L443 756 aa15.33■□□□□ 0.04
LDLR-205ENST00000557933 ANKRD36BQ8N2N9 1353 aa15.32■□□□□ 0.04
LDLR-205ENST00000557933 PLEKHG1Q9ULL1 1385 aa15.32■□□□□ 0.04
LDLR-205ENST00000557933 ZMYND15Q9H091 742 aa15.32■□□□□ 0.04
LDLR-205ENST00000557933 PTPRMP28827 1452 aa15.32■□□□□ 0.04
LDLR-205ENST00000557933 KIF16BQ96L93 1317 aa15.32■□□□□ 0.04
LDLR-205ENST00000557933 CPS1P31327 1500 aa15.32■□□□□ 0.04
LDLR-205ENST00000557933 TECPR2O15040 1411 aa15.32■□□□□ 0.04
LDLR-205ENST00000557933 RNF214Q8ND24 703 aa15.31■□□□□ 0.04
LDLR-205ENST00000557933 AAMPQ13685 434 aa15.31■□□□□ 0.04
LDLR-205ENST00000557933 MBIPQ9NS73 344 aa15.31■□□□□ 0.04
LDLR-205ENST00000557933 BAG4O95429 457 aaKnown RBP15.3■□□□□ 0.04
LDLR-205ENST00000557933 KIAA1211Q6ZU35 1233 aa15.3■□□□□ 0.04
LDLR-205ENST00000557933 VAMP4O75379 141 aa15.3■□□□□ 0.04
LDLR-205ENST00000557933 BMP2KLQ5H9B9 411 aa15.3■□□□□ 0.04
LDLR-205ENST00000557933 MIS18AQ9NYP9 233 aa15.3■□□□□ 0.04
LDLR-205ENST00000557933 PRPF40AO75400 957 aaKnown RBP15.29■□□□□ 0.04
LDLR-205ENST00000557933 PUS7Q96PZ0 661 aaKnown RBP15.29■□□□□ 0.04
LDLR-205ENST00000557933 XPCQ01831 940 aaPredicted RBP15.28■□□□□ 0.04
LDLR-205ENST00000557933 TWISTNBQ3B726 338 aaPredicted RBP15.28■□□□□ 0.04
LDLR-205ENST00000557933 CDK19Q9BWU1 502 aa15.28■□□□□ 0.04
LDLR-205ENST00000557933 TULP4Q9NRJ4 1543 aa15.28■□□□□ 0.04
LDLR-205ENST00000557933 MRPL50Q8N5N7 158 aaKnown RBP15.28■□□□□ 0.04
LDLR-205ENST00000557933 NSFL1CQ9UNZ2 370 aaKnown RBP15.28■□□□□ 0.04
LDLR-205ENST00000557933 NME9Q86XW9 330 aa15.27■□□□□ 0.04
LDLR-205ENST00000557933 PKNOX2Q96KN3 472 aa15.27■□□□□ 0.04
LDLR-205ENST00000557933 SNX21Q969T3 373 aa15.27■□□□□ 0.03
LDLR-205ENST00000557933 POLKQ9UBT6 870 aa15.27■□□□□ 0.03
LDLR-205ENST00000557933 SIRT1Q96EB6 747 aa15.27■□□□□ 0.03
LDLR-205ENST00000557933 TERF2IPQ9NYB0 399 aa15.27■□□□□ 0.03
LDLR-205ENST00000557933 R3HCC1Q9Y3T6 440 aaKnown RBP15.27■□□□□ 0.03
LDLR-205ENST00000557933 YTHDC2Q9H6S0 1430 aaKnown RBP15.26■□□□□ 0.03
LDLR-205ENST00000557933 FAM13BQ9NYF5 915 aa15.26■□□□□ 0.03
LDLR-205ENST00000557933 STAG3Q9UJ98 1225 aa15.26■□□□□ 0.03
LDLR-205ENST00000557933 PRIM1P49642 420 aaKnown RBP15.26■□□□□ 0.03
LDLR-205ENST00000557933 SLC4A10Q6U841 1118 aa15.26■□□□□ 0.03
LDLR-205ENST00000557933 ADGRB2O60241 1585 aa15.25■□□□□ 0.03
LDLR-205ENST00000557933 FAM135BQ49AJ0 1406 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms