RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 GJD4Q96KN9 370 aaPredicted RBP12.85□□□□□ -0.35
VRK1-206ENST00000557222 PSME1Q06323 249 aa12.84□□□□□ -0.35
VRK1-206ENST00000557222 UNC5CLQ8IV45 518 aa12.84□□□□□ -0.35
VRK1-206ENST00000557222 NRXN1Q9ULB1 1477 aa12.84□□□□□ -0.35
VRK1-206ENST00000557222 KIF1AQ12756 1690 aa12.83□□□□□ -0.35
VRK1-206ENST00000557222 DHX57Q6P158 1386 aaKnown RBP12.83□□□□□ -0.36
VRK1-206ENST00000557222 PLEKHH1Q9ULM0 1364 aa12.83□□□□□ -0.36
VRK1-206ENST00000557222 MARF1Q9Y4F3 1742 aaKnown RBP12.83□□□□□ -0.36
VRK1-206ENST00000557222 KRT28Q7Z3Y7 464 aa12.83□□□□□ -0.36
VRK1-206ENST00000557222 FMN2Q9NZ56 1722 aa12.82□□□□□ -0.36
VRK1-206ENST00000557222 HOXB3P14651 431 aaPredicted RBP12.82□□□□□ -0.36
VRK1-206ENST00000557222 XPCQ01831 940 aaPredicted RBP12.82□□□□□ -0.36
VRK1-206ENST00000557222 SLIT2O94813 1529 aa12.82□□□□□ -0.36
VRK1-206ENST00000557222 NUTM2FA1L443 756 aa12.81□□□□□ -0.36
VRK1-206ENST00000557222 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
VRK1-206ENST00000557222 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.81□□□□□ -0.36
VRK1-206ENST00000557222 SBNO1A3KN83 1393 aa12.81□□□□□ -0.36
VRK1-206ENST00000557222 STAC3Q96MF2 364 aa12.8□□□□□ -0.36
VRK1-206ENST00000557222 CFAP70Q5T0N1 1121 aa12.79□□□□□ -0.36
VRK1-206ENST00000557222 ARHGEF10O15013 1369 aa12.79□□□□□ -0.36
VRK1-206ENST00000557222 TNS3Q68CZ2 1445 aa12.79□□□□□ -0.36
VRK1-206ENST00000557222 DLC1Q96QB1 1528 aa12.78□□□□□ -0.36
VRK1-206ENST00000557222 ONECUT3O60422 494 aaPredicted RBP12.78□□□□□ -0.36
VRK1-206ENST00000557222 VPS72Q15906 364 aa12.78□□□□□ -0.36
VRK1-206ENST00000557222 RTN4Q9NQC3 1192 aaKnown RBP12.78□□□□□ -0.36
VRK1-206ENST00000557222 ANKARQ7Z5J8 1434 aa12.78□□□□□ -0.36
VRK1-206ENST00000557222 RALGAPBQ86X10 1494 aa12.78□□□□□ -0.36
VRK1-206ENST00000557222 PRAM1Q96QH2 718 aa12.77□□□□□ -0.37
VRK1-206ENST00000557222 POGKQ9P215 609 aa12.76□□□□□ -0.37
VRK1-206ENST00000557222 USP32Q8NFA0 1604 aa12.76□□□□□ -0.37
VRK1-206ENST00000557222 BLMP54132 1417 aaPredicted RBP12.75□□□□□ -0.37
VRK1-206ENST00000557222 HAP1P54257 671 aaPredicted RBP12.75□□□□□ -0.37
VRK1-206ENST00000557222 EIF3AQ14152 1382 aaKnown RBP12.75□□□□□ -0.37
VRK1-206ENST00000557222 DOK7Q18PE1 504 aa12.75□□□□□ -0.37
VRK1-206ENST00000557222 MARVELD3Q96A59 401 aa12.75□□□□□ -0.37
VRK1-206ENST00000557222 GLI3P10071 1580 aa12.74□□□□□ -0.37
VRK1-206ENST00000557222 KIF3CO14782 793 aa12.74□□□□□ -0.37
VRK1-206ENST00000557222 NWD2Q9ULI1 1742 aa12.74□□□□□ -0.37
VRK1-206ENST00000557222 C2orf72A6NCS6 295 aa12.73□□□□□ -0.37
VRK1-206ENST00000557222 HRCP23327 699 aa12.73□□□□□ -0.37
VRK1-206ENST00000557222 SEPT12Q8IYM1 358 aa12.73□□□□□ -0.37
VRK1-206ENST00000557222 RYDENQ9NUL5 291 aaKnown RBP12.73□□□□□ -0.37
VRK1-206ENST00000557222 ADGRB2O60241 1585 aa12.73□□□□□ -0.37
VRK1-206ENST00000557222 RGPD8O14715 1765 aaPredicted RBP12.72□□□□□ -0.37
VRK1-206ENST00000557222 ZNF710Q8N1W2 664 aa12.72□□□□□ -0.37
VRK1-206ENST00000557222 CABLES1Q8TDN4 633 aa12.72□□□□□ -0.37
VRK1-206ENST00000557222 PCDH10Q9P2E7 1040 aa12.72□□□□□ -0.37
VRK1-206ENST00000557222 ADGRB1O14514 1584 aa12.72□□□□□ -0.37
VRK1-206ENST00000557222 GPRASP1Q5JY77 1395 aa12.71□□□□□ -0.37
VRK1-206ENST00000557222 RAB3GAP2Q9H2M9 1393 aa12.71□□□□□ -0.37
VRK1-206ENST00000557222 FAM83GA6ND36 823 aa12.71□□□□□ -0.37
VRK1-206ENST00000557222 SF3B2Q13435 895 aaKnown RBP12.71□□□□□ -0.37
VRK1-206ENST00000557222 SAFB2Q14151 953 aaKnown RBP eCLIP12.71□□□□□ -0.37
VRK1-206ENST00000557222 WASLO00401 505 aaPredicted RBP12.7□□□□□ -0.38
VRK1-206ENST00000557222 LMOD2Q6P5Q4 547 aa12.7□□□□□ -0.38
VRK1-206ENST00000557222 KRT27Q7Z3Y8 459 aa12.7□□□□□ -0.38
VRK1-206ENST00000557222 PMFBP1Q8TBY8 1022 aa12.7□□□□□ -0.38
VRK1-206ENST00000557222 GTPBP6O43824 516 aaPredicted RBP12.69□□□□□ -0.38
VRK1-206ENST00000557222 TRAK1Q9UPV9 953 aa12.69□□□□□ -0.38
VRK1-206ENST00000557222 RIMBP2O15034 1052 aa12.68□□□□□ -0.38
VRK1-206ENST00000557222 EMP3P54852 163 aa12.68□□□□□ -0.38
VRK1-206ENST00000557222 TMC2Q8TDI7 906 aa12.68□□□□□ -0.38
VRK1-206ENST00000557222 DCAF11Q8TEB1 546 aa12.68□□□□□ -0.38
VRK1-206ENST00000557222 CCDC9Q9Y3X0 531 aaKnown RBP12.68□□□□□ -0.38
VRK1-206ENST00000557222 TULP4Q9NRJ4 1543 aa12.67□□□□□ -0.38
VRK1-206ENST00000557222 PLCH1Q4KWH8 1693 aa12.67□□□□□ -0.38
VRK1-206ENST00000557222 BRWD3Q6RI45 1802 aa12.67□□□□□ -0.38
VRK1-206ENST00000557222 HOXB1P14653 301 aaPredicted RBP12.67□□□□□ -0.38
VRK1-206ENST00000557222 ABCA3Q99758 1704 aa12.67□□□□□ -0.38
VRK1-206ENST00000557222 MINK1Q8N4C8 1332 aaPredicted RBP12.66□□□□□ -0.38
VRK1-206ENST00000557222 PRR36Q9H6K5 1346 aa12.66□□□□□ -0.38
VRK1-206ENST00000557222 TRPM3Q9HCF6 1732 aaPredicted RBP12.66□□□□□ -0.38
VRK1-206ENST00000557222 CDAN1Q8IWY9 1227 aa12.66□□□□□ -0.38
VRK1-206ENST00000557222 NGDNQ8NEJ9 315 aaKnown RBP12.66□□□□□ -0.38
VRK1-206ENST00000557222 HIRIP3Q9BW71 556 aaPredicted RBP12.66□□□□□ -0.38
VRK1-206ENST00000557222 BTG4Q9NY30 223 aa12.66□□□□□ -0.38
VRK1-206ENST00000557222 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
VRK1-206ENST00000557222 ALS2Q96Q42 1657 aa12.65□□□□□ -0.38
VRK1-206ENST00000557222 DEFB132Q7Z7B7 95 aa12.65□□□□□ -0.38
VRK1-206ENST00000557222 COL14A1Q05707 1796 aaKnown RBP12.65□□□□□ -0.38
VRK1-206ENST00000557222 SPATA31A5Q5VU36 1347 aa12.64□□□□□ -0.39
VRK1-206ENST00000557222 SPATA31A7Q8IWB4 1347 aa12.64□□□□□ -0.39
VRK1-206ENST00000557222 BAG6P46379 1132 aa12.64□□□□□ -0.39
VRK1-206ENST00000557222 ZSWIM6Q9HCJ5 1215 aa12.64□□□□□ -0.39
VRK1-206ENST00000557222 FAM98CQ17RN3 349 aaKnown RBP12.63□□□□□ -0.39
VRK1-206ENST00000557222 NUDT16Q96DE0 195 aaKnown RBP12.63□□□□□ -0.39
VRK1-206ENST00000557222 NRAPQ86VF7 1730 aa12.62□□□□□ -0.39
VRK1-206ENST00000557222 GPR153Q6NV75 609 aa12.62□□□□□ -0.39
VRK1-206ENST00000557222 PRDM11Q9NQV5 511 aa12.62□□□□□ -0.39
VRK1-206ENST00000557222 ATP7BP35670 1465 aa12.61□□□□□ -0.39
VRK1-206ENST00000557222 A0A0G2JS52 829 aa12.61□□□□□ -0.39
VRK1-206ENST00000557222 FAM205CA6NFA0 338 aa12.61□□□□□ -0.39
VRK1-206ENST00000557222 MYT1Q01538 1121 aa12.61□□□□□ -0.39
VRK1-206ENST00000557222 POLR3AO14802 1390 aaPredicted RBP12.6□□□□□ -0.39
VRK1-206ENST00000557222 PLEKHG3A1L390 1219 aa12.6□□□□□ -0.39
VRK1-206ENST00000557222 GPHNQ9NQX3 736 aaPredicted RBP12.6□□□□□ -0.39
VRK1-206ENST00000557222 DISP2A7MBM2 1401 aa12.6□□□□□ -0.39
VRK1-206ENST00000557222 ITSN1Q15811 1721 aa12.59□□□□□ -0.39
VRK1-206ENST00000557222 POTEB3A0JP26 581 aa12.59□□□□□ -0.39
VRK1-206ENST00000557222 POTEBQ6S5H4 581 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms