RNA–Protein interactions for RNA: ENST00000555746.5

SRP54-209, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 558 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-209ENST00000555746 SLFNL1Q499Z3 407 aa6.44□□□□□ -1.38
SRP54-209ENST00000555746 CCDC125Q86Z20 511 aa6.44□□□□□ -1.38
SRP54-209ENST00000555746 PLEKHM2Q8IWE5 1019 aa6.44□□□□□ -1.38
SRP54-209ENST00000555746 SEPT12Q8IYM1 358 aa6.44□□□□□ -1.38
SRP54-209ENST00000555746 EHBP1Q8NDI1 1231 aa6.44□□□□□ -1.38
SRP54-209ENST00000555746 CDK15Q96Q40 435 aa6.44□□□□□ -1.38
SRP54-209ENST00000555746 MAFBQ9Y5Q3 323 aaPredicted RBP6.44□□□□□ -1.38
SRP54-209ENST00000555746 LZTS3O60299 673 aaPredicted RBP6.43□□□□□ -1.38
SRP54-209ENST00000555746 RNF20Q5VTR2 975 aa6.43□□□□□ -1.38
SRP54-209ENST00000555746 ZNF598Q86UK7 904 aaKnown RBP6.43□□□□□ -1.38
SRP54-209ENST00000555746 RNF135Q8IUD6 432 aa6.43□□□□□ -1.38
SRP54-209ENST00000555746 HOMEZQ8IX15 550 aa6.43□□□□□ -1.38
SRP54-209ENST00000555746 GIGYF1O75420 1035 aaPredicted RBP6.42□□□□□ -1.38
SRP54-209ENST00000555746 SKIP12755 728 aa6.42□□□□□ -1.38
SRP54-209ENST00000555746 LMOD1P29536 600 aaPredicted RBP6.42□□□□□ -1.38
SRP54-209ENST00000555746 MAP7D1Q3KQU3 841 aa6.42□□□□□ -1.38
SRP54-209ENST00000555746 TRAF7Q6Q0C0 670 aa6.42□□□□□ -1.38
SRP54-209ENST00000555746 PBXIP1Q96AQ6 731 aa6.42□□□□□ -1.38
SRP54-209ENST00000555746 USP17L5A8MUK1 530 aa6.41□□□□□ -1.38
SRP54-209ENST00000555746 ZNF697Q5TEC3 545 aa6.41□□□□□ -1.38
SRP54-209ENST00000555746 PLPP7Q8NBV4 271 aa6.41□□□□□ -1.38
SRP54-209ENST00000555746 KCTD15Q96SI1 283 aaPredicted RBP6.41□□□□□ -1.38
SRP54-209ENST00000555746 PRKD2Q9BZL6 878 aa6.41□□□□□ -1.38
SRP54-209ENST00000555746 USP17L3A6NCW0 530 aa6.4□□□□□ -1.38
SRP54-209ENST00000555746 USP17L4A6NCW7 530 aa6.4□□□□□ -1.38
SRP54-209ENST00000555746 INTS6LQ5JSJ4 861 aaKnown RBP6.4□□□□□ -1.38
SRP54-209ENST00000555746 USP17L2Q6R6M4 530 aa6.4□□□□□ -1.38
SRP54-209ENST00000555746 VASH1Q7L8A9 365 aaPredicted RBP6.4□□□□□ -1.38
SRP54-209ENST00000555746 USP17L1Q7RTZ2 530 aa6.4□□□□□ -1.38
SRP54-209ENST00000555746 MRGPRX2Q96LB1 330 aa6.4□□□□□ -1.38
SRP54-209ENST00000555746 CCDC85AQ96PX6 553 aaPredicted RBP6.4□□□□□ -1.38
SRP54-209ENST00000555746 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.39□□□□□ -1.39
SRP54-209ENST00000555746 RFX1P22670 979 aa6.39□□□□□ -1.39
SRP54-209ENST00000555746 GRM5P41594 1212 aa6.39□□□□□ -1.39
SRP54-209ENST00000555746 KANK4Q5T7N3 995 aaPredicted RBP6.39□□□□□ -1.39
SRP54-209ENST00000555746 PKD2L1Q9P0L9 805 aa6.39□□□□□ -1.39
SRP54-209ENST00000555746 GDF9O60383 454 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 RGS20O76081 388 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 ADH1CP00326 375 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 NR5A1Q13285 461 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 NCOA4Q13772 614 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 TSGA10IPQ3SY00 556 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 VRTNQ9H8Y1 702 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 DOLKQ9UPQ8 538 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 TLL2Q9Y6L7 1015 aa6.38□□□□□ -1.39
SRP54-209ENST00000555746 ATG7O95352 703 aa6.37□□□□□ -1.39
SRP54-209ENST00000555746 EML3Q32P44 896 aa6.37□□□□□ -1.39
SRP54-209ENST00000555746 ABCC9O60706 1549 aa6.36□□□□□ -1.39
SRP54-209ENST00000555746 ACIN1Q9UKV3 1341 aaKnown RBP6.36□□□□□ -1.39
SRP54-209ENST00000555746 ATP5J2-PTCD1G3V325 749 aa6.36□□□□□ -1.39
SRP54-209ENST00000555746 FSHRP23945 695 aa6.36□□□□□ -1.39
SRP54-209ENST00000555746 DHX9Q08211 1270 aaKnown RBP6.36□□□□□ -1.39
SRP54-209ENST00000555746 ELOAQ14241 798 aaKnown RBP6.36□□□□□ -1.39
SRP54-209ENST00000555746 ARID5BQ14865 1188 aa6.36□□□□□ -1.39
SRP54-209ENST00000555746 DEPDC4Q8N2C3 294 aa6.36□□□□□ -1.39
SRP54-209ENST00000555746 MKRN1Q9UHC7 482 aaKnown RBP6.36□□□□□ -1.39
SRP54-209ENST00000555746 FAM196BA6NMK8 535 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 ERVH48-1M5A8F1 160 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 PRR20EP86478 221 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 PRR20CP86479 221 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 PRR20DP86480 221 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 PRR20BP86481 221 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 PRR20AP86496 221 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 SNIP1Q8TAD8 396 aaKnown RBP6.35□□□□□ -1.39
SRP54-209ENST00000555746 TRIM52Q96A61 297 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 SIRT1Q96EB6 747 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 CDCA7Q9BWT1 371 aaPredicted RBP6.35□□□□□ -1.39
SRP54-209ENST00000555746 NOD1Q9Y239 953 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 PCDHB11Q9Y5F2 797 aa6.35□□□□□ -1.39
SRP54-209ENST00000555746 ERVK-9P63128 1117 aa6.34□□□□□ -1.39
SRP54-209ENST00000555746 FOXC1Q12948 553 aa6.34□□□□□ -1.39
SRP54-209ENST00000555746 USP4Q13107 963 aa6.34□□□□□ -1.39
SRP54-209ENST00000555746 TRIM67Q6ZTA4 783 aa6.34□□□□□ -1.39
SRP54-209ENST00000555746 TRIM50Q86XT4 487 aa6.34□□□□□ -1.39
SRP54-209ENST00000555746 CCDC116Q8IYX3 515 aa6.34□□□□□ -1.39
SRP54-209ENST00000555746 TOR4AQ9NXH8 423 aa6.34□□□□□ -1.39
SRP54-209ENST00000555746 NR3C2P08235 984 aa6.33□□□□□ -1.4
SRP54-209ENST00000555746 ATP1A2P50993 1020 aa6.33□□□□□ -1.4
SRP54-209ENST00000555746 PTK7Q13308 1070 aa6.33□□□□□ -1.4
SRP54-209ENST00000555746 OXLD1Q5BKU9 147 aa6.33□□□□□ -1.4
SRP54-209ENST00000555746 RETREG2Q8NC44 543 aa6.33□□□□□ -1.4
SRP54-209ENST00000555746 USTQ9Y2C2 406 aa6.33□□□□□ -1.4
SRP54-209ENST00000555746 USP17L15C9J2P7 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L10C9JJH3 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L13C9JLJ4 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L12C9JPN9 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L11C9JVI0 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L21D6R901 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L18D6R9N7 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L22D6RA61 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L17D6RBQ6 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L19D6RCP7 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L20D6RJB6 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 ALDH1A1P00352 501 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 RAB15P59190 212 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 PDE4CQ08493 712 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 USP17L24Q0WX57 530 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 CRTC2Q53ET0 693 aaPredicted RBP6.32□□□□□ -1.4
SRP54-209ENST00000555746 CDCA8Q53HL2 280 aa6.32□□□□□ -1.4
SRP54-209ENST00000555746 PPP1R26Q5T8A7 1209 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms