RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 GAS2L2Q8NHY3 880 aa9.37□□□□□ -0.91
VPS13D-211ENST00000543710 PDCP20941 246 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 DCTN1Q14203 1278 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 CLUAP1Q96AJ1 413 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 STARD3NLO95772 234 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 RASSF8Q8NHQ8 419 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 EPRSP07814 1512 aaKnown RBP9.36□□□□□ -0.91
VPS13D-211ENST00000543710 GNAI3P08754 354 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 IFIT2P09913 472 aaKnown RBP9.36□□□□□ -0.91
VPS13D-211ENST00000543710 RFC4P35249 363 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 CAMSAP2Q08AD1 1489 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 SAFBQ15424 915 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS13D-211ENST00000543710 ANO2Q9NQ90 1003 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 HDAC9Q9UKV0 1011 aa9.36□□□□□ -0.91
VPS13D-211ENST00000543710 DHX16O60231 1041 aaKnown RBP9.35□□□□□ -0.91
VPS13D-211ENST00000543710 RPGRQ92834 1020 aaKnown RBP9.35□□□□□ -0.91
VPS13D-211ENST00000543710 SMARCE1Q969G3 411 aa9.35□□□□□ -0.91
VPS13D-211ENST00000543710 ANKRD45Q5TZF3 282 aa9.35□□□□□ -0.91
VPS13D-211ENST00000543710 CBFA2T2O43439 604 aa9.35□□□□□ -0.91
VPS13D-211ENST00000543710 APBA3O96018 575 aa9.35□□□□□ -0.91
VPS13D-211ENST00000543710 TAOK2Q9UL54 1235 aa9.35□□□□□ -0.91
VPS13D-211ENST00000543710 ST20-MTHFSA0A0A6YYL1 179 aa9.35□□□□□ -0.91
VPS13D-211ENST00000543710 C19orf44Q9H6X5 657 aa9.35□□□□□ -0.91
VPS13D-211ENST00000543710 TRDNQ13061 729 aa9.34□□□□□ -0.91
VPS13D-211ENST00000543710 QTRT2Q9H974 415 aaKnown RBP9.34□□□□□ -0.91
VPS13D-211ENST00000543710 IQCEQ6IPM2 695 aa9.34□□□□□ -0.91
VPS13D-211ENST00000543710 CCDC73Q6ZRK6 1079 aa9.34□□□□□ -0.91
VPS13D-211ENST00000543710 SMC3Q9UQE7 1217 aa9.34□□□□□ -0.91
VPS13D-211ENST00000543710 ZNF622Q969S3 477 aaKnown RBP eCLIP9.34□□□□□ -0.911e-6■□□□□ 10.4
VPS13D-211ENST00000543710 MPHOSPH6Q99547 160 aaKnown RBP9.34□□□□□ -0.91
VPS13D-211ENST00000543710 SLKQ9H2G2 1235 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-211ENST00000543710 TMOD3Q9NYL9 352 aa9.34□□□□□ -0.91
VPS13D-211ENST00000543710 NCOA1Q15788 1441 aa9.34□□□□□ -0.91
VPS13D-211ENST00000543710 G3BP1Q13283 466 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS13D-211ENST00000543710 TCIRG1Q13488 830 aa9.34□□□□□ -0.91
VPS13D-211ENST00000543710 ZSCAN31Q96LW9 406 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-211ENST00000543710 CCT4P50991 539 aaKnown RBP9.34□□□□□ -0.92
VPS13D-211ENST00000543710 CCDC30Q5VVM6 783 aa9.34□□□□□ -0.92
VPS13D-211ENST00000543710 OTUD7BQ6GQQ9 843 aa9.34□□□□□ -0.92
VPS13D-211ENST00000543710 GRIN3BO60391 1043 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 TSPY26PQ9H489 355 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 TOMM22Q9NS69 142 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 WDR7Q9Y4E6 1490 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 ZRSR2Q15696 482 aaKnown RBP9.33□□□□□ -0.92
VPS13D-211ENST00000543710 DDB1Q16531 1140 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 C22orf23Q9BZE7 217 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 CCDC87Q9NVE4 849 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 PDCL2Q8N4E4 241 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 RAPGEF6Q8TEU7 1601 aa9.33□□□□□ -0.92
VPS13D-211ENST00000543710 KIF2AO00139 706 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-211ENST00000543710 SLC3A2P08195 630 aaKnown RBP9.32□□□□□ -0.92
VPS13D-211ENST00000543710 RUFY1Q96T51 708 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 BICRAQ9NZM4 1560 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 ADGBQ8N7X0 1667 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 KRT28Q7Z3Y7 464 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 CCDC146Q8IYE0 955 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 PHF8Q9UPP1 1060 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 SHANK2Q9UPX8 1470 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 ZSCAN25Q6NSZ9 544 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 INSRP06213 1382 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 NCKAP5LQ9HCH0 1330 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 CFAP74Q9C0B2 1584 aa9.32□□□□□ -0.92
VPS13D-211ENST00000543710 EIF6P56537 245 aaKnown RBP9.32□□□□□ -0.92
VPS13D-211ENST00000543710 SPRYD3Q8NCJ5 442 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 RALGAPBQ86X10 1494 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 LUC7LQ9NQ29 371 aaKnown RBP9.31□□□□□ -0.92
VPS13D-211ENST00000543710 PTPRKQ15262 1439 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 IKQ13123 557 aaPredicted RBP9.31□□□□□ -0.92
VPS13D-211ENST00000543710 NUTM2GQ5VZR2 741 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 EXOC6Q8TAG9 804 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 SAMD1Q6SPF0 538 aaPredicted RBP9.31□□□□□ -0.92
VPS13D-211ENST00000543710 TSPYL1Q9H0U9 437 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 ADGRL1O94910 1474 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 JMYQ8N9B5 988 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 DUOX2Q9NRD8 1548 aa9.31□□□□□ -0.92
VPS13D-211ENST00000543710 TCOF1Q13428 1488 aaKnown RBP9.3□□□□□ -0.92
VPS13D-211ENST00000543710 RPRD2Q5VT52 1461 aaKnown RBP9.3□□□□□ -0.92
VPS13D-211ENST00000543710 MPHOSPH10O00566 681 aaKnown RBP9.3□□□□□ -0.92
VPS13D-211ENST00000543710 PRKAG2Q9UGJ0 569 aa9.3□□□□□ -0.92
VPS13D-211ENST00000543710 MCM3P25205 808 aa9.3□□□□□ -0.92
VPS13D-211ENST00000543710 PDE6BP35913 854 aa9.3□□□□□ -0.92
VPS13D-211ENST00000543710 RIPK4P57078 832 aa9.3□□□□□ -0.92
VPS13D-211ENST00000543710 SART3Q15020 963 aaKnown RBP9.3□□□□□ -0.92
VPS13D-211ENST00000543710 FILIP1LQ4L180 1135 aa9.3□□□□□ -0.92
VPS13D-211ENST00000543710 ZNF771Q7L3S4 317 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-211ENST00000543710 BICDL1Q6ZP65 573 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 RILPL2Q969X0 211 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 SPON1Q9HCB6 807 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 ARHGEF12Q9NZN5 1544 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 SLC4A10Q6U841 1118 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 CPLX1O14810 134 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 MYCNP04198 464 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-211ENST00000543710 C9orf78Q9NZ63 289 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-211ENST00000543710 ZC3H6P61129 1189 aaKnown RBP9.29□□□□□ -0.92
VPS13D-211ENST00000543710 HSP90B2PQ58FF3 399 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 MNS1Q8NEH6 495 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 PKNOX2Q96KN3 472 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 AMOTL2Q9Y2J4 779 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 YEATS2Q9ULM3 1422 aa9.29□□□□□ -0.92
VPS13D-211ENST00000543710 CDKL5O76039 1030 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms