RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 FIBPO43427 364 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 PKP1Q13835 747 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 MCM10Q7L590 875 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 RAPGEF3O95398 923 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 PDCL3Q9H2J4 239 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 KRT24Q2M2I5 525 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 C8orf58Q8NAV2 365 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 CWC22Q9HCG8 908 aaKnown RBP15.76■□□□□ 0.11
MSH6-210ENST00000540021 SAMD9LQ8IVG5 1584 aa15.76■□□□□ 0.11
MSH6-210ENST00000540021 F6X3S4 739 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 ABCC11Q96J66 1382 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 ABCC2Q92887 1545 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 TSPYL4Q9UJ04 414 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 VPS37CA5D8V6 355 aaPredicted RBP15.75■□□□□ 0.11
MSH6-210ENST00000540021 MBD3O95983 291 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 FGD1P98174 961 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 CDC42BPAQ5VT25 1732 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 ZBTB7BO15156 539 aaPredicted RBP15.75■□□□□ 0.11
MSH6-210ENST00000540021 SDSP20132 328 aa15.75■□□□□ 0.11
MSH6-210ENST00000540021 ZNF830Q96NB3 372 aaPredicted RBP15.74■□□□□ 0.11
MSH6-210ENST00000540021 RBSNQ9H1K0 784 aa15.74■□□□□ 0.11
MSH6-210ENST00000540021 PTPRTO14522 1441 aa15.74■□□□□ 0.11
MSH6-210ENST00000540021 NME9Q86XW9 330 aa15.74■□□□□ 0.11
MSH6-210ENST00000540021 SPC24Q8NBT2 197 aa15.74■□□□□ 0.11
MSH6-210ENST00000540021 ERVK-7P63135 1459 aa15.74■□□□□ 0.11
MSH6-210ENST00000540021 ZNF428Q96B54 188 aa15.74■□□□□ 0.11
MSH6-210ENST00000540021 PLCH2O75038 1416 aa15.73■□□□□ 0.11
MSH6-210ENST00000540021 VAMP4O75379 141 aa15.73■□□□□ 0.11
MSH6-210ENST00000540021 TTC22Q5TAA0 569 aa15.73■□□□□ 0.11
MSH6-210ENST00000540021 IL1RAPL2Q9NP60 686 aa15.73■□□□□ 0.11
MSH6-210ENST00000540021 MAST1Q9Y2H9 1570 aa15.73■□□□□ 0.11
MSH6-210ENST00000540021 MRPL50Q8N5N7 158 aaKnown RBP15.73■□□□□ 0.11
MSH6-210ENST00000540021 EIF2S2P20042 333 aaKnown RBP15.73■□□□□ 0.11
MSH6-210ENST00000540021 CFAP65Q6ZU64 1925 aaKnown RBP15.72■□□□□ 0.11
MSH6-210ENST00000540021 IDI1Q13907 227 aa15.72■□□□□ 0.11
MSH6-210ENST00000540021 ANKRD36BQ8N2N9 1353 aa15.71■□□□□ 0.11
MSH6-210ENST00000540021 PLEKHM2Q8IWE5 1019 aa15.71■□□□□ 0.11
MSH6-210ENST00000540021 DTNBO60941 627 aa15.71■□□□□ 0.11
MSH6-210ENST00000540021 AMPHP49418 695 aa15.71■□□□□ 0.11
MSH6-210ENST00000540021 ZRANB1Q9UGI0 708 aa15.71■□□□□ 0.11
MSH6-210ENST00000540021 MEIS3Q99687 375 aa15.71■□□□□ 0.1
MSH6-210ENST00000540021 USP25Q9UHP3 1055 aa15.71■□□□□ 0.1
MSH6-210ENST00000540021 UGGT1Q9NYU2 1555 aa15.7■□□□□ 0.1
MSH6-210ENST00000540021 SMC3Q9UQE7 1217 aa15.7■□□□□ 0.1
MSH6-210ENST00000540021 ARHGEF5Q12774 1597 aa15.7■□□□□ 0.1
MSH6-210ENST00000540021 TXNDC2Q86VQ3 553 aa15.7■□□□□ 0.1
MSH6-210ENST00000540021 A0A1W2PP64 1363 aa15.7■□□□□ 0.1
MSH6-210ENST00000540021 ZNF592Q92610 1267 aa15.7■□□□□ 0.1
MSH6-210ENST00000540021 ADCY10Q96PN6 1610 aa15.7■□□□□ 0.1
MSH6-210ENST00000540021 IL16Q14005 1332 aa15.69■□□□□ 0.1
MSH6-210ENST00000540021 SYNMO15061 1565 aa15.69■□□□□ 0.1
MSH6-210ENST00000540021 OFD1O75665 1012 aa15.69■□□□□ 0.1
MSH6-210ENST00000540021 DDX54Q8TDD1 881 aaKnown RBP15.69■□□□□ 0.1
MSH6-210ENST00000540021 IFT57Q9NWB7 429 aa15.69■□□□□ 0.1
MSH6-210ENST00000540021 ATP10AO60312 1499 aa15.69■□□□□ 0.1
MSH6-210ENST00000540021 CROCC2H7BZ55 1655 aa15.69■□□□□ 0.1
MSH6-210ENST00000540021 RPAP2Q8IXW5 612 aaPredicted RBP15.69■□□□□ 0.1
MSH6-210ENST00000540021 MAP7D2Q96T17 732 aa15.69■□□□□ 0.1
MSH6-210ENST00000540021 FAM177BA6PVY3 158 aa15.68■□□□□ 0.1
MSH6-210ENST00000540021 ADGRL1O94910 1474 aa15.68■□□□□ 0.1
MSH6-210ENST00000540021 SURF6O75683 361 aaKnown RBP15.68■□□□□ 0.1
MSH6-210ENST00000540021 TMX3Q96JJ7 454 aa15.68■□□□□ 0.1
MSH6-210ENST00000540021 GSPT1P15170 499 aaKnown RBP15.67■□□□□ 0.1
MSH6-210ENST00000540021 LMOD2Q6P5Q4 547 aa15.67■□□□□ 0.1
MSH6-210ENST00000540021 ZRSR1Q15695 479 aaKnown RBP15.67■□□□□ 0.1
MSH6-210ENST00000540021 DIAPH3Q9NSV4 1193 aa15.67■□□□□ 0.1
MSH6-210ENST00000540021 KDM5AP29375 1690 aaKnown RBP15.67■□□□□ 0.1
MSH6-210ENST00000540021 USP26Q9BXU7 913 aa15.67■□□□□ 0.1
MSH6-210ENST00000540021 POLKQ9UBT6 870 aa15.67■□□□□ 0.1
MSH6-210ENST00000540021 GNAI2P04899 355 aa15.66■□□□□ 0.1
MSH6-210ENST00000540021 NUTM1Q86Y26 1132 aa15.66■□□□□ 0.1
MSH6-210ENST00000540021 LRRCC1Q9C099 1032 aa15.66■□□□□ 0.1
MSH6-210ENST00000540021 ZHX1Q9UKY1 873 aaPredicted RBP15.66■□□□□ 0.1
MSH6-210ENST00000540021 CCDC9Q9Y3X0 531 aaKnown RBP15.66■□□□□ 0.1
MSH6-210ENST00000540021 RPGRIP1LQ68CZ1 1315 aa15.66■□□□□ 0.1
MSH6-210ENST00000540021 A0A0U1RQG5 324 aaPredicted RBP15.66■□□□□ 0.1
MSH6-210ENST00000540021 NUTM2GQ5VZR2 741 aa15.66■□□□□ 0.1
MSH6-210ENST00000540021 LRSAM1Q6UWE0 723 aa15.66■□□□□ 0.1
MSH6-210ENST00000540021 FANCAO15360 1455 aa15.66■□□□□ 0.1
MSH6-210ENST00000540021 E9PCH4 1651 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 GOLGA6L6A8MZA4 724 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 ZKSCAN5Q9Y2L8 839 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 ABCA8O94911 1581 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 LMBRD1Q9NUN5 540 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 NSD2O96028 1365 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 CBX1P83916 185 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 FBXW7Q969H0 707 aa15.65■□□□□ 0.1
MSH6-210ENST00000540021 AEBP1Q8IUX7 1158 aa15.64■□□□□ 0.09
MSH6-210ENST00000540021 NGDNQ8NEJ9 315 aaKnown RBP15.64■□□□□ 0.09
MSH6-210ENST00000540021 FOSBP53539 338 aa15.64■□□□□ 0.09
MSH6-210ENST00000540021 TTC12Q9H892 705 aaPredicted RBP15.64■□□□□ 0.09
MSH6-210ENST00000540021 ATP6V1DQ9Y5K8 247 aa15.64■□□□□ 0.09
MSH6-210ENST00000540021 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.64■□□□□ 0.099e-9■■■■■ 31
MSH6-210ENST00000540021 MCM2P49736 904 aa15.64■□□□□ 0.09
MSH6-210ENST00000540021 FBXO31Q5XUX0 539 aaPredicted RBP15.64■□□□□ 0.09
MSH6-210ENST00000540021 PLEKHF1Q96S99 279 aa15.64■□□□□ 0.09
MSH6-210ENST00000540021 ZNF692Q9BU19 519 aaPredicted RBP15.64■□□□□ 0.09
MSH6-210ENST00000540021 DCTPP1Q9H773 170 aa15.64■□□□□ 0.09
MSH6-210ENST00000540021 UBTFL1P0CB47 393 aaPredicted RBP15.63■□□□□ 0.09
MSH6-210ENST00000540021 HCLS1P14317 486 aaPredicted RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms