RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 POLKQ9UBT6 870 aa14.28□□□□□ -0.12
LEMD3-202ENST00000539442 MED1Q15648 1581 aaPredicted RBP14.27□□□□□ -0.12
LEMD3-202ENST00000539442 KIF24Q5T7B8 1368 aa14.27□□□□□ -0.12
LEMD3-202ENST00000539442 NUTM2GQ5VZR2 741 aa14.26□□□□□ -0.13
LEMD3-202ENST00000539442 COL3A1P02461 1466 aaPredicted RBP14.25□□□□□ -0.13
LEMD3-202ENST00000539442 POTEMA6NI47 508 aa14.25□□□□□ -0.13
LEMD3-202ENST00000539442 LMOD2Q6P5Q4 547 aa14.25□□□□□ -0.13
LEMD3-202ENST00000539442 FAM9BQ8IZU0 186 aa14.25□□□□□ -0.13
LEMD3-202ENST00000539442 CLEC11AQ9Y240 323 aa14.25□□□□□ -0.13
LEMD3-202ENST00000539442 EMILIN1Q9Y6C2 1016 aa14.25□□□□□ -0.13
LEMD3-202ENST00000539442 NFAT5O94916 1531 aa14.25□□□□□ -0.13
LEMD3-202ENST00000539442 RTL1A6NKG5 1358 aa14.24□□□□□ -0.13
LEMD3-202ENST00000539442 UBAP1LF5GYI3 381 aa14.24□□□□□ -0.13
LEMD3-202ENST00000539442 RRS1Q15050 365 aaKnown RBP14.24□□□□□ -0.13
LEMD3-202ENST00000539442 WDR43Q15061 677 aaKnown RBP eCLIP14.24□□□□□ -0.13
LEMD3-202ENST00000539442 FLT4P35916 1363 aa14.23□□□□□ -0.13
LEMD3-202ENST00000539442 MAP3K19Q56UN5 1328 aa14.23□□□□□ -0.13
LEMD3-202ENST00000539442 MAP2P11137 1827 aaKnown RBP14.23□□□□□ -0.13
LEMD3-202ENST00000539442 FBLN1P23142 703 aa14.23□□□□□ -0.13
LEMD3-202ENST00000539442 SPDYE1Q8NFV5 336 aaPredicted RBP14.23□□□□□ -0.13
LEMD3-202ENST00000539442 PPM1GO15355 546 aaPredicted RBP14.22□□□□□ -0.13
LEMD3-202ENST00000539442 GCP02774 474 aa14.22□□□□□ -0.13
LEMD3-202ENST00000539442 LRRC59Q96AG4 307 aaKnown RBP14.22□□□□□ -0.13
LEMD3-202ENST00000539442 NUDCQ9Y266 331 aa14.22□□□□□ -0.13
LEMD3-202ENST00000539442 SHPRHQ149N8 1683 aa14.21□□□□□ -0.13
LEMD3-202ENST00000539442 SOX12O15370 315 aa14.21□□□□□ -0.13
LEMD3-202ENST00000539442 DIAPH1O60610 1272 aaKnown RBP14.21□□□□□ -0.13
LEMD3-202ENST00000539442 PHRF1Q9P1Y6 1649 aaKnown RBP14.21□□□□□ -0.13
LEMD3-202ENST00000539442 POTEIP0CG38 1075 aa14.2□□□□□ -0.14
LEMD3-202ENST00000539442 AMPHP49418 695 aa14.2□□□□□ -0.14
LEMD3-202ENST00000539442 BLMP54132 1417 aaPredicted RBP14.2□□□□□ -0.14
LEMD3-202ENST00000539442 PEAK1Q9H792 1746 aa14.2□□□□□ -0.14
LEMD3-202ENST00000539442 CRYBG1Q9Y4K1 1723 aa14.2□□□□□ -0.14
LEMD3-202ENST00000539442 PIP4K2BP78356 416 aa14.19□□□□□ -0.14
LEMD3-202ENST00000539442 ARHGEF25Q86VW2 580 aa14.19□□□□□ -0.14
LEMD3-202ENST00000539442 YTHDC1Q96MU7 727 aaKnown RBP14.19□□□□□ -0.14
LEMD3-202ENST00000539442 PCDH10Q9P2E7 1040 aa14.19□□□□□ -0.14
LEMD3-202ENST00000539442 ADAMTS8Q9UP79 889 aa14.19□□□□□ -0.14
LEMD3-202ENST00000539442 ABCC6O95255 1503 aa14.19□□□□□ -0.14
LEMD3-202ENST00000539442 COL16A1Q07092 1604 aaPredicted RBP14.19□□□□□ -0.14
LEMD3-202ENST00000539442 PHLPP1O60346 1717 aa14.18□□□□□ -0.14
LEMD3-202ENST00000539442 HOXC9P31274 260 aa14.18□□□□□ -0.14
LEMD3-202ENST00000539442 CPDO75976 1380 aa14.18□□□□□ -0.14
LEMD3-202ENST00000539442 COL22A1Q8NFW1 1626 aaPredicted RBP14.17□□□□□ -0.14
LEMD3-202ENST00000539442 IL13P35225 146 aa14.17□□□□□ -0.14
LEMD3-202ENST00000539442 IP6K1Q92551 441 aa14.17□□□□□ -0.14
LEMD3-202ENST00000539442 CLCN6P51797 869 aa14.16□□□□□ -0.14
LEMD3-202ENST00000539442 EIF4A2Q14240 407 aaKnown RBP14.16□□□□□ -0.14
LEMD3-202ENST00000539442 HSP90AB2PQ58FF8 381 aa14.16□□□□□ -0.14
LEMD3-202ENST00000539442 POTEGQ6S5H5 508 aa14.16□□□□□ -0.14
LEMD3-202ENST00000539442 LTN1O94822 1766 aa14.16□□□□□ -0.14
LEMD3-202ENST00000539442 U2SURPO15042 1029 aaKnown RBP14.15□□□□□ -0.14
LEMD3-202ENST00000539442 U2AF1L5P0DN76 240 aaPredicted RBP14.15□□□□□ -0.14
LEMD3-202ENST00000539442 HNRNPUQ00839 825 aaKnown RBP eCLIP14.15□□□□□ -0.14
LEMD3-202ENST00000539442 U2AF1Q01081 240 aaKnown RBP eCLIP14.15□□□□□ -0.14
LEMD3-202ENST00000539442 PNNQ9H307 717 aaKnown RBP14.15□□□□□ -0.14
LEMD3-202ENST00000539442 ABCA3Q99758 1704 aa14.15□□□□□ -0.14
LEMD3-202ENST00000539442 CABLES1Q8TDN4 633 aa14.14□□□□□ -0.15
LEMD3-202ENST00000539442 SPDYE2BA6NHP3 402 aa14.13□□□□□ -0.15
LEMD3-202ENST00000539442 PLEKHG5O94827 1062 aa14.13□□□□□ -0.15
LEMD3-202ENST00000539442 SPDYE6P0CI01 402 aa14.13□□□□□ -0.15
LEMD3-202ENST00000539442 HAP1P54257 671 aaPredicted RBP14.13□□□□□ -0.15
LEMD3-202ENST00000539442 ZC3H6P61129 1189 aaKnown RBP14.13□□□□□ -0.15
LEMD3-202ENST00000539442 SPDYE2Q495Y8 402 aa14.13□□□□□ -0.15
LEMD3-202ENST00000539442 KIAA0232Q92628 1395 aa14.12□□□□□ -0.15
LEMD3-202ENST00000539442 FCHSD2O94868 740 aa14.12□□□□□ -0.15
LEMD3-202ENST00000539442 DCBLD2Q96PD2 775 aa14.12□□□□□ -0.15
LEMD3-202ENST00000539442 FOXD4L1Q9NU39 408 aa14.12□□□□□ -0.15
LEMD3-202ENST00000539442 RGPD1P0DJD0 1748 aa14.12□□□□□ -0.15
LEMD3-202ENST00000539442 ZBED9Q6R2W3 1325 aa14.12□□□□□ -0.15
LEMD3-202ENST00000539442 IGSF1Q8N6C5 1336 aa14.12□□□□□ -0.15
LEMD3-202ENST00000539442 ZBTB7CA1YPR0 619 aa14.11□□□□□ -0.15
LEMD3-202ENST00000539442 NGEFQ8N5V2 710 aa14.11□□□□□ -0.15
LEMD3-202ENST00000539442 RUNDC1Q96C34 613 aa14.11□□□□□ -0.15
LEMD3-202ENST00000539442 RSPH6AQ9H0K4 717 aa14.1□□□□□ -0.15
LEMD3-202ENST00000539442 PRDM11Q9NQV5 511 aa14.1□□□□□ -0.15
LEMD3-202ENST00000539442 KDRP35968 1356 aa14.09□□□□□ -0.15
LEMD3-202ENST00000539442 JCADQ9P266 1359 aa14.09□□□□□ -0.15
LEMD3-202ENST00000539442 COL18A1P39060 1754 aa14.09□□□□□ -0.15
LEMD3-202ENST00000539442 PLEKHF1Q96S99 279 aa14.09□□□□□ -0.15
LEMD3-202ENST00000539442 ERBB3P21860 1342 aa14.09□□□□□ -0.15
LEMD3-202ENST00000539442 NEFMP07197 916 aa14.08□□□□□ -0.16
LEMD3-202ENST00000539442 CENPBP07199 599 aaPredicted RBP14.08□□□□□ -0.16
LEMD3-202ENST00000539442 CCDC146Q8IYE0 955 aa14.08□□□□□ -0.16
LEMD3-202ENST00000539442 ANKRD24Q8TF21 1146 aa14.08□□□□□ -0.16
LEMD3-202ENST00000539442 EYA1Q99502 592 aa14.08□□□□□ -0.16
LEMD3-202ENST00000539442 AXIN2Q9Y2T1 843 aa14.08□□□□□ -0.16
LEMD3-202ENST00000539442 MAPK8IP3Q9UPT6 1336 aa14.08□□□□□ -0.16
LEMD3-202ENST00000539442 LMO7Q8WWI1 1683 aa14.07□□□□□ -0.16
LEMD3-202ENST00000539442 NCAPD2Q15021 1401 aa14.07□□□□□ -0.16
LEMD3-202ENST00000539442 PRKAR2BP31323 418 aa14.07□□□□□ -0.16
LEMD3-202ENST00000539442 SULT6B1Q6IMI4 303 aa14.07□□□□□ -0.16
LEMD3-202ENST00000539442 CAMTA1Q9Y6Y1 1673 aa14.07□□□□□ -0.16
LEMD3-202ENST00000539442 APAF1O14727 1248 aa14.06□□□□□ -0.16
LEMD3-202ENST00000539442 HMOX1P09601 288 aa14.06□□□□□ -0.16
LEMD3-202ENST00000539442 CHRNA2Q15822 529 aa14.06□□□□□ -0.16
LEMD3-202ENST00000539442 LTV1Q96GA3 475 aaPredicted RBP14.06□□□□□ -0.16
LEMD3-202ENST00000539442 FAM208AQ9UK61 1670 aaKnown RBP14.05□□□□□ -0.16
LEMD3-202ENST00000539442 COL14A1Q05707 1796 aaKnown RBP14.05□□□□□ -0.16
LEMD3-202ENST00000539442 TCP11L2Q8N4U5 519 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms