RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 DXOO77932 396 aaKnown RBP5.43□□□□□ -1.54
CD44-234ENST00000531873 VSIG8P0DPA2 414 aa5.43□□□□□ -1.54
CD44-234ENST00000531873 SKOR1P84550 965 aa5.43□□□□□ -1.54
CD44-234ENST00000531873 NR6A1Q15406 480 aa5.43□□□□□ -1.54
CD44-234ENST00000531873 WASHC4Q2M389 1173 aa5.43□□□□□ -1.54
CD44-234ENST00000531873 HDGFL1Q5TGJ6 251 aa5.43□□□□□ -1.54
CD44-234ENST00000531873 RETREG3Q86VR2 466 aa5.43□□□□□ -1.54
CD44-234ENST00000531873 UCN2Q96RP3 112 aa5.43□□□□□ -1.54
CD44-234ENST00000531873 PPP1R15AO75807 674 aaPredicted RBP5.42□□□□□ -1.54
CD44-234ENST00000531873 VEGFBP49765 207 aa5.42□□□□□ -1.54
CD44-234ENST00000531873 Q3C1V9 767 aa5.42□□□□□ -1.54
CD44-234ENST00000531873 KCTD17Q8N5Z5 321 aa5.42□□□□□ -1.54
CD44-234ENST00000531873 ALG2Q9H553 416 aa5.42□□□□□ -1.54
CD44-234ENST00000531873 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.41□□□□□ -1.54
CD44-234ENST00000531873 ZBTB7CA1YPR0 619 aa5.41□□□□□ -1.54
CD44-234ENST00000531873 SIAH2O43255 324 aa5.41□□□□□ -1.54
CD44-234ENST00000531873 ALDH1A1P00352 501 aa5.41□□□□□ -1.54
CD44-234ENST00000531873 SRPK2P78362 688 aaKnown RBP5.41□□□□□ -1.54
CD44-234ENST00000531873 DESI1Q6ICB0 168 aa5.41□□□□□ -1.54
CD44-234ENST00000531873 CAPN5O15484 640 aaPredicted RBP5.4□□□□□ -1.54
CD44-234ENST00000531873 BMP1P13497 986 aa5.4□□□□□ -1.54
CD44-234ENST00000531873 PBXIP1Q96AQ6 731 aa5.4□□□□□ -1.54
CD44-234ENST00000531873 PPP1R12CQ9BZL4 782 aa5.4□□□□□ -1.54
CD44-234ENST00000531873 PALM3A6NDB9 673 aaPredicted RBP5.39□□□□□ -1.55
CD44-234ENST00000531873 LYPD8Q6UX82 237 aa5.39□□□□□ -1.55
CD44-234ENST00000531873 TMEM151AQ8N4L1 468 aa5.39□□□□□ -1.55
CD44-234ENST00000531873 USB1Q9BQ65 265 aaKnown RBP5.39□□□□□ -1.55
CD44-234ENST00000531873 F12P00748 615 aaPredicted RBP5.38□□□□□ -1.55
CD44-234ENST00000531873 RFX1P22670 979 aa5.38□□□□□ -1.55
CD44-234ENST00000531873 SOX11P35716 441 aa5.37□□□□□ -1.55
CD44-234ENST00000531873 AEBP1Q8IUX7 1158 aa5.37□□□□□ -1.55
CD44-234ENST00000531873 ZFP42Q96MM3 310 aa5.37□□□□□ -1.55
CD44-234ENST00000531873 FBXO45P0C2W1 286 aa5.36□□□□□ -1.55
CD44-234ENST00000531873 RASSF7Q02833 373 aa5.36□□□□□ -1.55
CD44-234ENST00000531873 MAP10Q9P2G4 905 aa5.36□□□□□ -1.55
CD44-234ENST00000531873 MAFBQ9Y5Q3 323 aaPredicted RBP5.36□□□□□ -1.55
CD44-234ENST00000531873 CARNS1A5YM72 827 aa5.35□□□□□ -1.55
CD44-234ENST00000531873 GDF11O95390 407 aa5.35□□□□□ -1.55
CD44-234ENST00000531873 LMOD1P29536 600 aaPredicted RBP5.35□□□□□ -1.55
CD44-234ENST00000531873 NR1H3Q13133 447 aa5.35□□□□□ -1.55
CD44-234ENST00000531873 TBC1D9Q6ZT07 1266 aa5.35□□□□□ -1.55
CD44-234ENST00000531873 TFIP11Q9UBB9 837 aaKnown RBP5.35□□□□□ -1.55
CD44-234ENST00000531873 USTQ9Y2C2 406 aa5.35□□□□□ -1.55
CD44-234ENST00000531873 CCDC9Q9Y3X0 531 aaKnown RBP5.35□□□□□ -1.55
CD44-234ENST00000531873 WASF2Q9Y6W5 498 aa5.35□□□□□ -1.55
CD44-234ENST00000531873 JUNDP17535 347 aa5.34□□□□□ -1.55
CD44-234ENST00000531873 SEMA3FQ13275 785 aa5.34□□□□□ -1.55
CD44-234ENST00000531873 PTPRNQ16849 979 aa5.34□□□□□ -1.55
CD44-234ENST00000531873 CCDC24Q8N4L8 307 aa5.34□□□□□ -1.55
CD44-234ENST00000531873 EHBP1Q8NDI1 1231 aa5.34□□□□□ -1.55
CD44-234ENST00000531873 FKBPLQ9UIM3 349 aa5.34□□□□□ -1.55
CD44-234ENST00000531873 ACIN1Q9UKV3 1341 aaKnown RBP5.33□□□□□ -1.56
CD44-234ENST00000531873 PIK3CDO00329 1044 aa5.33□□□□□ -1.56
CD44-234ENST00000531873 ATP9BO43861 1147 aa5.33□□□□□ -1.56
CD44-234ENST00000531873 MPNDQ8N594 471 aa5.33□□□□□ -1.56
CD44-234ENST00000531873 ZC3H4Q9UPT8 1303 aaKnown RBP5.32□□□□□ -1.56
CD44-234ENST00000531873 TMEM88BA6NKF7 163 aa5.32□□□□□ -1.56
CD44-234ENST00000531873 ZBBXA8MT70 800 aa5.32□□□□□ -1.56
CD44-234ENST00000531873 RNF225M0QZC1 329 aaPredicted RBP5.32□□□□□ -1.56
CD44-234ENST00000531873 ATG7O95352 703 aa5.32□□□□□ -1.56
CD44-234ENST00000531873 EIF4G2P78344 907 aaKnown RBP eCLIP5.32□□□□□ -1.56
CD44-234ENST00000531873 MRPL14Q6P1L8 145 aaKnown RBP5.32□□□□□ -1.56
CD44-234ENST00000531873 OCSTAMPQ9BR26 566 aa5.32□□□□□ -1.56
CD44-234ENST00000531873 IGHA1P01876 353 aa5.31□□□□□ -1.56
CD44-234ENST00000531873 CSB-PGBD3P0DP91 1061 aa5.31□□□□□ -1.56
CD44-234ENST00000531873 CDCA8Q53HL2 280 aa5.31□□□□□ -1.56
CD44-234ENST00000531873 PTCRAQ6ISU1 281 aaPredicted RBP5.31□□□□□ -1.56
CD44-234ENST00000531873 PNMA1Q8ND90 353 aa5.31□□□□□ -1.56
CD44-234ENST00000531873 BRD1O95696 1058 aa5.3□□□□□ -1.56
CD44-234ENST00000531873 PDE4CQ08493 712 aa5.3□□□□□ -1.56
CD44-234ENST00000531873 SCARF1Q14162 830 aa5.3□□□□□ -1.56
CD44-234ENST00000531873 KANK4Q5T7N3 995 aaPredicted RBP5.3□□□□□ -1.56
CD44-234ENST00000531873 NPM2Q86SE8 214 aaKnown RBP5.3□□□□□ -1.56
CD44-234ENST00000531873 FAM174AQ8TBP5 190 aa5.3□□□□□ -1.56
CD44-234ENST00000531873 GZF1Q9H116 711 aaPredicted RBP5.3□□□□□ -1.56
CD44-234ENST00000531873 ZMIZ1Q9ULJ6 1067 aa5.3□□□□□ -1.56
CD44-234ENST00000531873 ADAMTS8Q9UP79 889 aa5.3□□□□□ -1.56
CD44-234ENST00000531873 USP17L3A6NCW0 530 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 USP17L4A6NCW7 530 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 CCNYL3P0C7X3 344 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 SH3BP2P78314 561 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 KCNA1Q09470 495 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 USP17L2Q6R6M4 530 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 USP17L1Q7RTZ2 530 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 NFATC2IPQ8NCF5 419 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 NUDT12Q9BQG2 462 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 KLF16Q9BXK1 252 aaPredicted RBP5.29□□□□□ -1.56
CD44-234ENST00000531873 EVA1BQ9NVM1 165 aa5.29□□□□□ -1.56
CD44-234ENST00000531873 PPFIA3O75145 1194 aa5.28□□□□□ -1.56
CD44-234ENST00000531873 TIMP2P16035 220 aa5.28□□□□□ -1.56
CD44-234ENST00000531873 CTHP32929 405 aa5.28□□□□□ -1.56
CD44-234ENST00000531873 KCNH2Q12809 1159 aa5.28□□□□□ -1.56
CD44-234ENST00000531873 PLEKHM2Q8IWE5 1019 aa5.28□□□□□ -1.56
CD44-234ENST00000531873 RGS22Q8NE09 1264 aa5.28□□□□□ -1.56
CD44-234ENST00000531873 STK32AQ8WU08 396 aa5.28□□□□□ -1.56
CD44-234ENST00000531873 PURBQ96QR8 312 aaKnown RBP5.28□□□□□ -1.56
CD44-234ENST00000531873 DNMT3AQ9Y6K1 912 aaPredicted RBP5.28□□□□□ -1.56
CD44-234ENST00000531873 SOBPA7XYQ1 873 aa5.27□□□□□ -1.57
CD44-234ENST00000531873 USP17L5A8MUK1 530 aa5.27□□□□□ -1.57
CD44-234ENST00000531873 NNTQ13423 1086 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms