RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, human

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2-208	ENST00000519895	IFT172	Q9UG01	1749 aa		4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	BCL9	O00512	1426 aa		4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	SLC52A1	Q9NWF4	448 aa		4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	RPGRIP1L	Q68CZ1	1315 aa		4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	GABBR2	O75899	941 aa		4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	STK32B	Q9NY57	414 aa		4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	ATF5	Q9Y2D1	282 aa	Predicted RBP	4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	XRN1	Q8IZH2	1706 aa	Known RBP	4.29	□□□□□ -1.72
MCF2-208	ENST00000519895	KDM2B	Q8NHM5	1336 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	ABCB7	O75027	752 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	POLD1	P28340	1107 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	CLSPN	Q9HAW4	1339 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	ZC3H4	Q9UPT8	1303 aa	Known RBP	4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	ERICH6	Q7L0X2	663 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	ZNF526	Q8TF50	670 aa	Predicted RBP	4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	SYMPK	Q92797	1274 aa	Known RBP	4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	NRXN1	Q9ULB1	1477 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	KNDC1	Q76NI1	1749 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	KIF1B	O60333	1816 aa		4.28	□□□□□ -1.72
MCF2-208	ENST00000519895	PLEKHG1	Q9ULL1	1385 aa		4.27	□□□□□ -1.73
MCF2-208	ENST00000519895	PXDN	Q92626	1479 aa		4.27	□□□□□ -1.73
MCF2-208	ENST00000519895	PARP4	Q9UKK3	1724 aa	Known RBP	4.27	□□□□□ -1.73
MCF2-208	ENST00000519895	ZNF644	Q9H582	1327 aa	Predicted RBP	4.27	□□□□□ -1.73
MCF2-208	ENST00000519895	TULP1	O00294	542 aa	Predicted RBP	4.27	□□□□□ -1.73
MCF2-208	ENST00000519895	SLC15A2	Q16348	729 aa		4.27	□□□□□ -1.73
MCF2-208	ENST00000519895	CD2AP	Q9Y5K6	639 aa		4.27	□□□□□ -1.73
MCF2-208	ENST00000519895	TRIM37	O94972	964 aa		4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	ANO8	Q9HCE9	1232 aa	Predicted RBP	4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	ATP1B4	Q9UN42	357 aa	Predicted RBP	4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	STXBP5L	Q9Y2K9	1186 aa		4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	FBXO31	Q5XUX0	539 aa	Predicted RBP	4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	TBX22	Q9Y458	520 aa		4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	PKD1L2	Q7Z442	2459 aa		4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	PPL	O60437	1756 aa		4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	SSH2	Q76I76	1423 aa		4.26	□□□□□ -1.73
MCF2-208	ENST00000519895		A0A1W2PPC1	479 aa		4.26	□□□□□ -1.73
MCF2-208	ENST00000519895	POTEM	A6NI47	508 aa		4.25	□□□□□ -1.73
MCF2-208	ENST00000519895	HDGF	P51858	240 aa	Known RBP	4.25	□□□□□ -1.73
MCF2-208	ENST00000519895	C1orf167	Q5SNV9	1468 aa		4.25	□□□□□ -1.73
MCF2-208	ENST00000519895	KCTD2	Q14681	263 aa		4.25	□□□□□ -1.73
MCF2-208	ENST00000519895	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
MCF2-208	ENST00000519895	SIRT1	Q96EB6	747 aa		4.25	□□□□□ -1.73
MCF2-208	ENST00000519895	ADGRL3	Q9HAR2	1447 aa		4.25	□□□□□ -1.73
MCF2-208	ENST00000519895	NMRK2	Q9NPI5	230 aa		4.24	□□□□□ -1.73
MCF2-208	ENST00000519895	CLTCL1	P53675	1640 aa		4.24	□□□□□ -1.73
MCF2-208	ENST00000519895	SPATA31E1	Q6ZUB1	1445 aa		4.24	□□□□□ -1.73
MCF2-208	ENST00000519895	MYT1L	Q9UL68	1186 aa		4.24	□□□□□ -1.73
MCF2-208	ENST00000519895	ANKRD30B	Q9BXX2	1392 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	TECPR2	O15040	1411 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	CFAP44	Q96MT7	982 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	SPATA31A5	Q5VU36	1347 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	SPATA31A7	Q8IWB4	1347 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	CCDC144A	A2RUR9	1427 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	KIF3B	O15066	747 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	RANGAP1	P46060	587 aa	Predicted RBP	4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	ATP7B	P35670	1465 aa		4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	ZNF777	Q9ULD5	760 aa	Predicted RBP	4.23	□□□□□ -1.73
MCF2-208	ENST00000519895	WASHC2C	Q9Y4E1	1318 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	LRRC37A3	O60309	1634 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	LRPPRC	P42704	1394 aa	Known RBP	4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	POTEG	Q6S5H5	508 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	NLGN2	Q8NFZ4	835 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	KIF1A	Q12756	1690 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	TRPM1	Q7Z4N2	1603 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	QRICH2	Q9H0J4	1663 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	ARFGEF1	Q9Y6D6	1849 aa		4.22	□□□□□ -1.73
MCF2-208	ENST00000519895	RASSF10	A6NK89	507 aa		4.21	□□□□□ -1.73
MCF2-208	ENST00000519895	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	4.21	□□□□□ -1.73
MCF2-208	ENST00000519895	KDM2A	Q9Y2K7	1162 aa		4.21	□□□□□ -1.73
MCF2-208	ENST00000519895	CHGA	P10645	457 aa	Known RBP	4.21	□□□□□ -1.74
MCF2-208	ENST00000519895	KIF7	Q2M1P5	1343 aa		4.21	□□□□□ -1.74
MCF2-208	ENST00000519895	NUP155	O75694	1391 aa		4.21	□□□□□ -1.74
MCF2-208	ENST00000519895	USP6	P35125	1406 aa		4.21	□□□□□ -1.74
MCF2-208	ENST00000519895	MAP3K12	Q12852	859 aa		4.21	□□□□□ -1.74
MCF2-208	ENST00000519895	DGKZ	Q13574	1117 aa		4.21	□□□□□ -1.74
MCF2-208	ENST00000519895	KIF13B	Q9NQT8	1826 aa		4.21	□□□□□ -1.74
MCF2-208	ENST00000519895	NPHP3	Q7Z494	1330 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	PITPNM1	O00562	1244 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	VEGFB	P49765	207 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	GGT6	Q6P531	493 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	RIMS2	Q9UQ26	1411 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	CUL9	Q8IWT3	2517 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	RAB3GAP2	Q9H2M9	1393 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	FAM50A	Q14320	339 aa	Known RBP	4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	BARGIN	Q6ZT62	677 aa		4.2	□□□□□ -1.74
MCF2-208	ENST00000519895	MYO5B	Q9ULV0	1848 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	SOX10	P56693	466 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	EVX2	Q03828	476 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	OTUD5	Q96G74	571 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	RRP7BP	Q9NSQ0	103 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	PIK3C2G	O75747	1445 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	FMN2	Q9NZ56	1722 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	FAM98C	Q17RN3	349 aa	Known RBP	4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	C14orf37	Q86TY3	774 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	PDGFD	Q9GZP0	370 aa	Predicted RBP	4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	COLQ	Q9Y215	455 aa	Predicted RBP	4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	HCN4	Q9Y3Q4	1203 aa		4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	SMG6	Q86US8	1419 aa	Known RBP	4.19	□□□□□ -1.74
MCF2-208	ENST00000519895	TRIM26	Q12899	539 aa	Predicted RBP	4.18	□□□□□ -1.74
MCF2-208	ENST00000519895	PKN2	Q16513	984 aa	Known RBP	4.18	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms