RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 DDB1Q16531 1140 aa27.84■■■□□ 2.05
HMGCS1-206ENST00000511774 BCL11BQ9C0K0 894 aaPredicted RBP27.84■■■□□ 2.05
HMGCS1-206ENST00000511774 CABP2Q9NPB3 220 aa27.84■■■□□ 2.05
HMGCS1-206ENST00000511774 RGPD5Q99666 1765 aa27.83■■■□□ 2.05
HMGCS1-206ENST00000511774 DCAF8L1A6NGE4 600 aa27.83■■■□□ 2.05
HMGCS1-206ENST00000511774 AXIN2Q9Y2T1 843 aa27.83■■■□□ 2.05
HMGCS1-206ENST00000511774 PIK3C2AO00443 1686 aa27.83■■■□□ 2.05
HMGCS1-206ENST00000511774 ZNF784Q8NCA9 323 aaPredicted RBP27.81■■■□□ 2.04
HMGCS1-206ENST00000511774 ATF5Q9Y2D1 282 aaPredicted RBP27.81■■■□□ 2.04
HMGCS1-206ENST00000511774 USP6P35125 1406 aa27.81■■■□□ 2.04
HMGCS1-206ENST00000511774 SRPK2P78362 688 aaKnown RBP27.8■■■□□ 2.04
HMGCS1-206ENST00000511774 NLRP6P59044 892 aa27.79■■■□□ 2.04
HMGCS1-206ENST00000511774 TOM1L2Q6ZVM7 507 aa27.79■■■□□ 2.04
HMGCS1-206ENST00000511774 BCL9O00512 1426 aa27.78■■■□□ 2.04
HMGCS1-206ENST00000511774 QRICH2Q9H0J4 1663 aa27.77■■■□□ 2.04
HMGCS1-206ENST00000511774 BRD4O60885 1362 aaPredicted RBP27.76■■■□□ 2.03
HMGCS1-206ENST00000511774 WDR17Q8IZU2 1322 aa27.76■■■□□ 2.03
HMGCS1-206ENST00000511774 CABP1Q9NZU7 370 aa27.76■■■□□ 2.03
HMGCS1-206ENST00000511774 TXNRD1Q16881 649 aa27.75■■■□□ 2.03
HMGCS1-206ENST00000511774 FHDC1Q9C0D6 1143 aaPredicted RBP27.74■■■□□ 2.03
HMGCS1-206ENST00000511774 CPSF1Q10570 1443 aaKnown RBP27.74■■■□□ 2.03
HMGCS1-206ENST00000511774 CENPJQ9HC77 1338 aaPredicted RBP27.73■■■□□ 2.03
HMGCS1-206ENST00000511774 CHD4Q14839 1912 aa27.73■■■□□ 2.03
HMGCS1-206ENST00000511774 SGIP1Q9BQI5 828 aa27.73■■■□□ 2.03
HMGCS1-206ENST00000511774 SYT17Q9BSW7 474 aa27.73■■■□□ 2.03
HMGCS1-206ENST00000511774 SLC15A2Q16348 729 aa27.71■■■□□ 2.03
HMGCS1-206ENST00000511774 ARHGEF25Q86VW2 580 aa27.7■■■□□ 2.02
HMGCS1-206ENST00000511774 STK32BQ9NY57 414 aa27.69■■■□□ 2.02
HMGCS1-206ENST00000511774 CARD10Q9BWT7 1032 aa27.67■■■□□ 2.02
HMGCS1-206ENST00000511774 PAPPAQ13219 1627 aa27.67■■■□□ 2.02
HMGCS1-206ENST00000511774 NHSQ6T4R5 1651 aa27.66■■■□□ 2.02
HMGCS1-206ENST00000511774 CDCA7Q9BWT1 371 aaPredicted RBP27.66■■■□□ 2.02
HMGCS1-206ENST00000511774 MTFR1LQ9H019 292 aa27.65■■■□□ 2.02
HMGCS1-206ENST00000511774 TRPM1Q7Z4N2 1603 aa27.65■■■□□ 2.02
HMGCS1-206ENST00000511774 NFAT5O94916 1531 aa27.65■■■□□ 2.02
HMGCS1-206ENST00000511774 SOX12O15370 315 aa27.64■■■□□ 2.02
HMGCS1-206ENST00000511774 TTC21BQ7Z4L5 1316 aa27.63■■■□□ 2.01
HMGCS1-206ENST00000511774 TNS2Q63HR2 1409 aa27.62■■■□□ 2.01
HMGCS1-206ENST00000511774 GOLGB1Q14789 3259 aaKnown RBP27.62■■■□□ 2.01
HMGCS1-206ENST00000511774 EXOC5O00471 708 aa27.61■■■□□ 2.01
HMGCS1-206ENST00000511774 CSB-PGBD3P0DP91 1061 aa27.61■■■□□ 2.01
HMGCS1-206ENST00000511774 SENP3-EIF4A1A0A087X0R7 540 aa27.59■■■□□ 2.01
HMGCS1-206ENST00000511774 ACSBG1Q96GR2 724 aa27.59■■■□□ 2.01
HMGCS1-206ENST00000511774 BTAF1O14981 1849 aa27.59■■■□□ 2.01
HMGCS1-206ENST00000511774 C1QTNF8P60827 252 aa27.58■■■□□ 2.01
HMGCS1-206ENST00000511774 ZNF827Q17R98 1081 aa27.57■■■□□ 2
HMGCS1-206ENST00000511774 ARXQ96QS3 562 aa27.57■■■□□ 2
HMGCS1-206ENST00000511774 ABCC6O95255 1503 aa27.57■■■□□ 2
HMGCS1-206ENST00000511774 CCDC7Q96M83 1385 aa27.56■■■□□ 2
HMGCS1-206ENST00000511774 KAT6BQ8WYB5 2073 aa27.55■■■□□ 2
HMGCS1-206ENST00000511774 KCNH5Q8NCM2 988 aa27.55■■■□□ 2
HMGCS1-206ENST00000511774 MAP3K5Q99683 1374 aa27.54■■■□□ 2
HMGCS1-206ENST00000511774 LRRC4BQ9NT99 713 aa27.53■■■□□ 2
HMGCS1-206ENST00000511774 CEP350Q5VT06 3117 aa27.53■■■□□ 2
HMGCS1-206ENST00000511774 EVC2Q86UK5 1308 aa27.52■■■□□ 2
HMGCS1-206ENST00000511774 TTC21AQ8NDW8 1320 aa27.5■■□□□ 1.99
HMGCS1-206ENST00000511774 MON2Q7Z3U7 1717 aa27.5■■□□□ 1.99
HMGCS1-206ENST00000511774 ZNF692Q9BU19 519 aaPredicted RBP27.49■■□□□ 1.99
HMGCS1-206ENST00000511774 COL24A1Q17RW2 1714 aa27.49■■□□□ 1.99
HMGCS1-206ENST00000511774 TUBGCP6Q96RT7 1819 aa27.48■■□□□ 1.99
HMGCS1-206ENST00000511774 LTN1O94822 1766 aa27.48■■□□□ 1.99
HMGCS1-206ENST00000511774 ERBB3P21860 1342 aa27.47■■□□□ 1.99
HMGCS1-206ENST00000511774 USP54Q70EL1 1684 aa27.46■■□□□ 1.99
HMGCS1-206ENST00000511774 QSER1Q2KHR3 1735 aa27.46■■□□□ 1.99
HMGCS1-206ENST00000511774 AKT1S1Q96B36 256 aa27.45■■□□□ 1.98
HMGCS1-206ENST00000511774 KTN1Q86UP2 1357 aaKnown RBP27.45■■□□□ 1.98
HMGCS1-206ENST00000511774 NLRP2Q9NX02 1062 aa27.44■■□□□ 1.98
HMGCS1-206ENST00000511774 GPR162Q16538 588 aa27.43■■□□□ 1.98
HMGCS1-206ENST00000511774 L3MBTL2Q969R5 705 aa27.43■■□□□ 1.98
HMGCS1-206ENST00000511774 SHANK3Q9BYB0 1731 aa27.43■■□□□ 1.98
HMGCS1-206ENST00000511774 IL2RBP14784 551 aa27.42■■□□□ 1.98
HMGCS1-206ENST00000511774 USP31Q70CQ4 1352 aa27.41■■□□□ 1.98
HMGCS1-206ENST00000511774 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.41■■□□□ 1.98
HMGCS1-206ENST00000511774 CD163L1Q9NR16 1453 aa27.4■■□□□ 1.98
HMGCS1-206ENST00000511774 NME9Q86XW9 330 aa27.4■■□□□ 1.98
HMGCS1-206ENST00000511774 PNPLA7Q6ZV29 1317 aa27.4■■□□□ 1.98
HMGCS1-206ENST00000511774 KCNQ4P56696 695 aa27.39■■□□□ 1.98
HMGCS1-206ENST00000511774 NLGN2Q8NFZ4 835 aa27.39■■□□□ 1.98
HMGCS1-206ENST00000511774 KLHL34Q8N239 644 aa27.38■■□□□ 1.97
HMGCS1-206ENST00000511774 ANKRD24Q8TF21 1146 aa27.37■■□□□ 1.97
HMGCS1-206ENST00000511774 SBNO2Q9Y2G9 1366 aa27.36■■□□□ 1.97
HMGCS1-206ENST00000511774 GIGYF1O75420 1035 aaPredicted RBP27.35■■□□□ 1.97
HMGCS1-206ENST00000511774 PELP1Q8IZL8 1130 aaKnown RBP27.34■■□□□ 1.97
HMGCS1-206ENST00000511774 SLC16A10Q8TF71 515 aa27.34■■□□□ 1.97
HMGCS1-206ENST00000511774 IFFO2Q5TF58 517 aa27.32■■□□□ 1.96
HMGCS1-206ENST00000511774 LY75O60449 1722 aa27.32■■□□□ 1.96
HMGCS1-206ENST00000511774 DOT1LQ8TEK3 1739 aa27.32■■□□□ 1.96
HMGCS1-206ENST00000511774 ROCK2O75116 1388 aaKnown RBP27.32■■□□□ 1.96
HMGCS1-206ENST00000511774 YBX3P16989 372 aaKnown RBP eCLIP27.3■■□□□ 1.963e-11■□□□□ 9.1
HMGCS1-206ENST00000511774 SLC27A3Q5K4L6 730 aa27.3■■□□□ 1.96
HMGCS1-206ENST00000511774 DDX54Q8TDD1 881 aaKnown RBP27.3■■□□□ 1.96
HMGCS1-206ENST00000511774 NSD2O96028 1365 aa27.3■■□□□ 1.96
HMGCS1-206ENST00000511774 POLD1P28340 1107 aa27.29■■□□□ 1.96
HMGCS1-206ENST00000511774 SIN3AQ96ST3 1273 aa27.28■■□□□ 1.96
HMGCS1-206ENST00000511774 TFCP2L1Q9NZI6 479 aa27.27■■□□□ 1.96
HMGCS1-206ENST00000511774 RGPD2P0DJD1 1756 aa27.27■■□□□ 1.96
HMGCS1-206ENST00000511774 FAM208AQ9UK61 1670 aaKnown RBP27.26■■□□□ 1.95
HMGCS1-206ENST00000511774 PRIM1P49642 420 aaKnown RBP27.25■■□□□ 1.95
HMGCS1-206ENST00000511774 SLC12A5Q9H2X9 1139 aa27.24■■□□□ 1.95
HMGCS1-206ENST00000511774 LTV1Q96GA3 475 aaPredicted RBP27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 264.9 ms