RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MST1RQ04912 1400 aa11.29□□□□□ -0.6
LIMCH1-209ENST00000509277 TTC21AQ8NDW8 1320 aa11.28□□□□□ -0.6
LIMCH1-209ENST00000509277 CPSF1Q10570 1443 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-209ENST00000509277 PRKAR2BP31323 418 aa11.28□□□□□ -0.6
LIMCH1-209ENST00000509277 A0A0U1RQG5 324 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-209ENST00000509277 CERKQ8TCT0 537 aa11.28□□□□□ -0.6
LIMCH1-209ENST00000509277 ERICH6BQ5W0A0 696 aa11.27□□□□□ -0.61
LIMCH1-209ENST00000509277 ANKARQ7Z5J8 1434 aa11.27□□□□□ -0.61
LIMCH1-209ENST00000509277 CDC42BPGQ6DT37 1551 aa11.26□□□□□ -0.61
LIMCH1-209ENST00000509277 KAT6BQ8WYB5 2073 aa11.26□□□□□ -0.61
LIMCH1-209ENST00000509277 EIF4A2Q14240 407 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-209ENST00000509277 MEX3CQ5U5Q3 659 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-209ENST00000509277 CDCA7LQ96GN5 454 aa11.25□□□□□ -0.61
LIMCH1-209ENST00000509277 IPO9Q96P70 1041 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-209ENST00000509277 THUMPD2Q9BTF0 503 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-209ENST00000509277 TCP11L2Q8N4U5 519 aa11.25□□□□□ -0.61
LIMCH1-209ENST00000509277 NSD2O96028 1365 aa11.25□□□□□ -0.61
LIMCH1-209ENST00000509277 ITSN1Q15811 1721 aa11.25□□□□□ -0.61
LIMCH1-209ENST00000509277 USP32Q8NFA0 1604 aa11.24□□□□□ -0.61
LIMCH1-209ENST00000509277 POLR3AO14802 1390 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-209ENST00000509277 TOM1L2Q6ZVM7 507 aa11.24□□□□□ -0.61
LIMCH1-209ENST00000509277 KCNH5Q8NCM2 988 aa11.24□□□□□ -0.61
LIMCH1-209ENST00000509277 HOXC9P31274 260 aa11.24□□□□□ -0.61
LIMCH1-209ENST00000509277 DCTN1Q14203 1278 aa11.24□□□□□ -0.61
LIMCH1-209ENST00000509277 C8orf37Q96NL8 207 aa11.23□□□□□ -0.61
LIMCH1-209ENST00000509277 ARID3AQ99856 593 aa11.23□□□□□ -0.61
LIMCH1-209ENST00000509277 ANKRD24Q8TF21 1146 aa11.23□□□□□ -0.61
LIMCH1-209ENST00000509277 NAP1L5Q96NT1 182 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-209ENST00000509277 AXIN2Q9Y2T1 843 aa11.23□□□□□ -0.61
LIMCH1-209ENST00000509277 FMN2Q9NZ56 1722 aa11.23□□□□□ -0.61
LIMCH1-209ENST00000509277 SPATA31A3Q5VYP0 1347 aa11.23□□□□□ -0.61
LIMCH1-209ENST00000509277 RIPK4P57078 832 aa11.22□□□□□ -0.61
LIMCH1-209ENST00000509277 KIAA0232Q92628 1395 aa11.22□□□□□ -0.61
LIMCH1-209ENST00000509277 PHACTR3Q96KR7 559 aa11.22□□□□□ -0.61
LIMCH1-209ENST00000509277 EYA1Q99502 592 aa11.22□□□□□ -0.61
LIMCH1-209ENST00000509277 ELL2O00472 640 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-209ENST00000509277 GLIPR1L2Q4G1C9 344 aa11.21□□□□□ -0.61
LIMCH1-209ENST00000509277 NPC1L1Q9UHC9 1359 aa11.21□□□□□ -0.61
LIMCH1-209ENST00000509277 NWD1Q149M9 1564 aa11.21□□□□□ -0.61
LIMCH1-209ENST00000509277 FAM83GA6ND36 823 aa11.21□□□□□ -0.62
LIMCH1-209ENST00000509277 RUNDC1Q96C34 613 aa11.21□□□□□ -0.62
LIMCH1-209ENST00000509277 NGLY1Q96IV0 654 aa11.21□□□□□ -0.62
LIMCH1-209ENST00000509277 BTG4Q9NY30 223 aa11.21□□□□□ -0.62
LIMCH1-209ENST00000509277 ADGRB2O60241 1585 aa11.21□□□□□ -0.62
LIMCH1-209ENST00000509277 HSPA1LP34931 641 aa11.21□□□□□ -0.62
LIMCH1-209ENST00000509277 NBPF6Q5VWK0 638 aa11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 SKAP1Q86WV1 359 aa11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 NBPF4Q96M43 638 aa11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 MAP2P11137 1827 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 TCERG1O14776 1098 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 IL13P35225 146 aa11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 DDX54Q8TDD1 881 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 FLT4P35916 1363 aa11.19□□□□□ -0.62
LIMCH1-209ENST00000509277 MCM10Q7L590 875 aa11.18□□□□□ -0.62
LIMCH1-209ENST00000509277 RAPGEF4Q8WZA2 1011 aa11.18□□□□□ -0.62
LIMCH1-209ENST00000509277 ARHGEF25Q86VW2 580 aa11.18□□□□□ -0.62
LIMCH1-209ENST00000509277 RTF1Q92541 710 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-209ENST00000509277 IP6K1Q92551 441 aa11.18□□□□□ -0.62
LIMCH1-209ENST00000509277 MIS18AQ9NYP9 233 aa11.18□□□□□ -0.62
LIMCH1-209ENST00000509277 PODXL2Q9NZ53 605 aa11.18□□□□□ -0.62
LIMCH1-209ENST00000509277 TNS3Q68CZ2 1445 aa11.17□□□□□ -0.62
LIMCH1-209ENST00000509277 TSR2Q969E8 191 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-209ENST00000509277 BCL2L13Q9BXK5 485 aa11.17□□□□□ -0.62
LIMCH1-209ENST00000509277 OVOS2A0A0J9YW53 1432 aa11.17□□□□□ -0.62
LIMCH1-209ENST00000509277 OVOS2Q6IE36 1432 aa11.17□□□□□ -0.62
LIMCH1-209ENST00000509277 DCCP43146 1447 aa11.17□□□□□ -0.62
LIMCH1-209ENST00000509277 SOS2Q07890 1332 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-209ENST00000509277 SBNO1A3KN83 1393 aa11.16□□□□□ -0.62
LIMCH1-209ENST00000509277 ARHGEF10O15013 1369 aa11.16□□□□□ -0.62
LIMCH1-209ENST00000509277 LARP1Q6PKG0 1096 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-209ENST00000509277 KIF20BQ96Q89 1820 aa11.16□□□□□ -0.62
LIMCH1-209ENST00000509277 SMG6Q86US8 1419 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-209ENST00000509277 TMPOP42166 694 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-209ENST00000509277 NECTIN2Q92692 538 aa11.15□□□□□ -0.62
LIMCH1-209ENST00000509277 SYTL4Q96C24 671 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-209ENST00000509277 NCOA3Q9Y6Q9 1424 aa11.15□□□□□ -0.62
LIMCH1-209ENST00000509277 XIRP1Q702N8 1843 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-209ENST00000509277 GOLGA2Q08379 1002 aa11.15□□□□□ -0.62
LIMCH1-209ENST00000509277 ZNF530Q6P9A1 599 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-209ENST00000509277 PNNQ9H307 717 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-209ENST00000509277 FCHSD2O94868 740 aa11.15□□□□□ -0.63
LIMCH1-209ENST00000509277 CANXP27824 592 aaKnown RBP11.15□□□□□ -0.63
LIMCH1-209ENST00000509277 RSPH6AQ9H0K4 717 aa11.15□□□□□ -0.63
LIMCH1-209ENST00000509277 SSH2Q76I76 1423 aa11.15□□□□□ -0.63
LIMCH1-209ENST00000509277 MPRIPQ6WCQ1 1025 aa11.14□□□□□ -0.63
LIMCH1-209ENST00000509277 ZBED9Q6R2W3 1325 aa11.14□□□□□ -0.63
LIMCH1-209ENST00000509277 AKAP12Q02952 1782 aa11.14□□□□□ -0.63
LIMCH1-209ENST00000509277 PIK3C2AO00443 1686 aa11.14□□□□□ -0.63
LIMCH1-209ENST00000509277 MON2Q7Z3U7 1717 aa11.14□□□□□ -0.63
LIMCH1-209ENST00000509277 MTHFSDQ2M296 383 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-209ENST00000509277 C1orf141Q5JVX7 400 aa11.13□□□□□ -0.63
LIMCH1-209ENST00000509277 ZMYND15Q9H091 742 aa11.13□□□□□ -0.63
LIMCH1-209ENST00000509277 SPINK5Q9NQ38 1064 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-209ENST00000509277 TOPAZ1Q8N9V7 1692 aa11.13□□□□□ -0.63
LIMCH1-209ENST00000509277 LTBP4Q8N2S1 1624 aa11.13□□□□□ -0.63
LIMCH1-209ENST00000509277 FRAT1Q92837 279 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-209ENST00000509277 PLIN1O60240 522 aa11.12□□□□□ -0.63
LIMCH1-209ENST00000509277 WWC1Q8IX03 1113 aa11.12□□□□□ -0.63
LIMCH1-209ENST00000509277 ROBO1Q9Y6N7 1651 aa11.12□□□□□ -0.63
LIMCH1-209ENST00000509277 TATP17735 454 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms