RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 TRIM32Q13049 653 aa10.67□□□□□ -0.7
TMEM39A-209ENST00000486235 CRIPAKQ8N1N5 446 aa10.67□□□□□ -0.7
TMEM39A-209ENST00000486235 CCDC24Q8N4L8 307 aa10.67□□□□□ -0.7
TMEM39A-209ENST00000486235 AFAP1Q8N556 730 aa10.67□□□□□ -0.7
TMEM39A-209ENST00000486235 USB1Q9BQ65 265 aaKnown RBP10.67□□□□□ -0.7
TMEM39A-209ENST00000486235 UBTFP17480 764 aaKnown RBP10.66□□□□□ -0.7
TMEM39A-209ENST00000486235 MMP16P51512 607 aa10.66□□□□□ -0.7
TMEM39A-209ENST00000486235 UHRF1BP1Q6BDS2 1440 aa10.66□□□□□ -0.7
TMEM39A-209ENST00000486235 KIF14Q15058 1648 aa10.66□□□□□ -0.7
TMEM39A-209ENST00000486235 ARHGAP5Q13017 1502 aa10.65□□□□□ -0.7
TMEM39A-209ENST00000486235 MYO5CQ9NQX4 1742 aa10.65□□□□□ -0.7
TMEM39A-209ENST00000486235 C11orf95C9JLR9 678 aaPredicted RBP10.65□□□□□ -0.7
TMEM39A-209ENST00000486235 WNT7AO00755 349 aa10.65□□□□□ -0.7
TMEM39A-209ENST00000486235 GUCA2AQ02747 115 aa10.65□□□□□ -0.7
TMEM39A-209ENST00000486235 TREML4Q6UXN2 200 aa10.65□□□□□ -0.7
TMEM39A-209ENST00000486235 CDK11AQ9UQ88 783 aaPredicted RBP10.65□□□□□ -0.7
TMEM39A-209ENST00000486235 ZNF518AQ6AHZ1 1483 aa10.64□□□□□ -0.71
TMEM39A-209ENST00000486235 J3QL48 77 aa10.64□□□□□ -0.71
TMEM39A-209ENST00000486235 SMPD1P17405 629 aa10.64□□□□□ -0.71
TMEM39A-209ENST00000486235 MRGPRX2Q96LB1 330 aa10.64□□□□□ -0.71
TMEM39A-209ENST00000486235 FMN1Q68DA7 1419 aa10.64□□□□□ -0.71
TMEM39A-209ENST00000486235 STRCQ7RTU9 1775 aa10.63□□□□□ -0.71
TMEM39A-209ENST00000486235 TULP1O00294 542 aaPredicted RBP10.63□□□□□ -0.71
TMEM39A-209ENST00000486235 DXOO77932 396 aaKnown RBP10.63□□□□□ -0.71
TMEM39A-209ENST00000486235 CTC1Q2NKJ3 1217 aa10.63□□□□□ -0.71
TMEM39A-209ENST00000486235 SNIP1Q8TAD8 396 aaKnown RBP10.63□□□□□ -0.71
TMEM39A-209ENST00000486235 SYMPKQ92797 1274 aaKnown RBP10.63□□□□□ -0.71
TMEM39A-209ENST00000486235 TROQ12816 1431 aaPredicted RBP10.63□□□□□ -0.71
TMEM39A-209ENST00000486235 ARHGAP35Q9NRY4 1499 aa10.62□□□□□ -0.71
TMEM39A-209ENST00000486235 MINK1Q8N4C8 1332 aaPredicted RBP10.62□□□□□ -0.71
TMEM39A-209ENST00000486235 KDM5CP41229 1560 aa10.62□□□□□ -0.71
TMEM39A-209ENST00000486235 DIP2CQ9Y2E4 1556 aa10.62□□□□□ -0.71
TMEM39A-209ENST00000486235 CCDC102AQ96A19 550 aa10.62□□□□□ -0.71
TMEM39A-209ENST00000486235 ESF1Q9H501 851 aaKnown RBP10.62□□□□□ -0.71
TMEM39A-209ENST00000486235 CLIP1P30622 1438 aa10.61□□□□□ -0.71
TMEM39A-209ENST00000486235 SOCS7O14512 581 aa10.61□□□□□ -0.71
TMEM39A-209ENST00000486235 HOXA2O43364 376 aa10.61□□□□□ -0.71
TMEM39A-209ENST00000486235 SMCPP49901 116 aaPredicted RBP10.6□□□□□ -0.71
TMEM39A-209ENST00000486235 USP46P62068 366 aa10.6□□□□□ -0.71
TMEM39A-209ENST00000486235 PTPRTO14522 1441 aa10.59□□□□□ -0.71
TMEM39A-209ENST00000486235 TRAPPC8Q9Y2L5 1435 aa10.59□□□□□ -0.71
TMEM39A-209ENST00000486235 ABCA6Q8N139 1617 aa10.59□□□□□ -0.71
TMEM39A-209ENST00000486235 LCE2AQ5TA79 106 aaPredicted RBP10.59□□□□□ -0.71
TMEM39A-209ENST00000486235 SETD1BQ9UPS6 1966 aaKnown RBP10.58□□□□□ -0.72
TMEM39A-209ENST00000486235 C3P01024 1663 aa10.58□□□□□ -0.72
TMEM39A-209ENST00000486235 SPATA31D1Q6ZQQ2 1576 aa10.58□□□□□ -0.72
TMEM39A-209ENST00000486235 MLH3Q9UHC1 1453 aa10.58□□□□□ -0.72
TMEM39A-209ENST00000486235 SKOR1P84550 965 aa10.58□□□□□ -0.72
TMEM39A-209ENST00000486235 RC3H1Q5TC82 1133 aaKnown RBP10.58□□□□□ -0.72
TMEM39A-209ENST00000486235 HPS1Q92902 700 aa10.58□□□□□ -0.72
TMEM39A-209ENST00000486235 REREQ9P2R6 1566 aa10.57□□□□□ -0.72
TMEM39A-209ENST00000486235 KRI1Q8N9T8 703 aaKnown RBP10.57□□□□□ -0.72
TMEM39A-209ENST00000486235 GPCPD1Q9NPB8 672 aa10.57□□□□□ -0.72
TMEM39A-209ENST00000486235 LTBP4Q8N2S1 1624 aa10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 WFS1O76024 890 aa10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 NUTM1Q86Y26 1132 aa10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 ATP13A2Q9NQ11 1180 aa10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 FAM217BQ9NTX9 383 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 ABCC1P33527 1531 aa10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 AGLP35573 1532 aa10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 NCOA1Q15788 1441 aa10.56□□□□□ -0.72
TMEM39A-209ENST00000486235 LRRIQ1Q96JM4 1722 aa10.55□□□□□ -0.72
TMEM39A-209ENST00000486235 CDC42BPBQ9Y5S2 1711 aa10.55□□□□□ -0.72
TMEM39A-209ENST00000486235 SNRPBP14678 240 aaKnown RBP10.55□□□□□ -0.72
TMEM39A-209ENST00000486235 CLCN1P35523 988 aa10.55□□□□□ -0.72
TMEM39A-209ENST00000486235 ZNF777Q9ULD5 760 aaPredicted RBP10.55□□□□□ -0.72
TMEM39A-209ENST00000486235 JUNDP17535 347 aa10.54□□□□□ -0.72
TMEM39A-209ENST00000486235 CNTLNQ9NXG0 1405 aa10.54□□□□□ -0.72
TMEM39A-209ENST00000486235 PREX2Q70Z35 1606 aa10.54□□□□□ -0.72
TMEM39A-209ENST00000486235 ITSN2Q9NZM3 1697 aa10.53□□□□□ -0.72
TMEM39A-209ENST00000486235 PTCRAQ6ISU1 281 aaPredicted RBP10.53□□□□□ -0.72
TMEM39A-209ENST00000486235 VSIG10Q8N0Z9 540 aa10.53□□□□□ -0.72
TMEM39A-209ENST00000486235 REPIN1Q9BWE0 567 aaKnown RBP10.53□□□□□ -0.72
TMEM39A-209ENST00000486235 KIDINS220Q9ULH0 1771 aa10.52□□□□□ -0.72
TMEM39A-209ENST00000486235 CAMSAP1Q5T5Y3 1602 aa10.52□□□□□ -0.73
TMEM39A-209ENST00000486235 ALDH1A1P00352 501 aa10.52□□□□□ -0.73
TMEM39A-209ENST00000486235 ZNF335Q9H4Z2 1342 aaPredicted RBP10.52□□□□□ -0.73
TMEM39A-209ENST00000486235 ZMYM3Q14202 1370 aa10.52□□□□□ -0.73
TMEM39A-209ENST00000486235 IQSEC2Q5JU85 1478 aa10.51□□□□□ -0.73
TMEM39A-209ENST00000486235 UBAP1LF5GYI3 381 aa10.51□□□□□ -0.73
TMEM39A-209ENST00000486235 NPATQ14207 1427 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 CASKIN1Q8WXD9 1431 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 CCDC18Q5T9S5 1454 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 C6orf229H3BNL8 230 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 FDX1P10109 184 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 HNRNPMP52272 730 aaKnown RBP eCLIP10.5□□□□□ -0.738e-7■■■□□ 16.7
TMEM39A-209ENST00000486235 WNT7BP56706 349 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 NFX1Q12986 1120 aaKnown RBP10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 NUDT12Q9BQG2 462 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 PCDHGC3Q9UN70 934 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 SAMD9LQ8IVG5 1584 aa10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 SPAG9O60271 1321 aaKnown RBP10.5□□□□□ -0.73
TMEM39A-209ENST00000486235 SYCP2Q9BX26 1530 aa10.49□□□□□ -0.73
TMEM39A-209ENST00000486235 RETREG3Q86VR2 466 aa10.49□□□□□ -0.73
TMEM39A-209ENST00000486235 CDC42BPAQ5VT25 1732 aa10.48□□□□□ -0.73
TMEM39A-209ENST00000486235 SUPT6HQ7KZ85 1726 aaKnown RBP10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 NDUFV2P19404 249 aa10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 SSTR3P32745 418 aaPredicted RBP10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 GGT6Q6P531 493 aa10.47□□□□□ -0.73
TMEM39A-209ENST00000486235 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms