RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 RGPD1P0DJD0 1748 aa34.3■■■■□ 3.08
SHOX2-204ENST00000483851 KCNH5Q8NCM2 988 aa34.28■■■■□ 3.08
SHOX2-204ENST00000483851 SPINK5Q9NQ38 1064 aaPredicted RBP34.28■■■■□ 3.08
SHOX2-204ENST00000483851 RTL1A6NKG5 1358 aa34.28■■■■□ 3.08
SHOX2-204ENST00000483851 RRP1P56182 461 aaKnown RBP34.27■■■■□ 3.08
SHOX2-204ENST00000483851 HSP90AB2PQ58FF8 381 aa34.27■■■■□ 3.08
SHOX2-204ENST00000483851 AMPHP49418 695 aa34.26■■■■□ 3.07
SHOX2-204ENST00000483851 IL16Q14005 1332 aa34.25■■■■□ 3.07
SHOX2-204ENST00000483851 KRT28Q7Z3Y7 464 aa34.24■■■■□ 3.07
SHOX2-204ENST00000483851 HMOX1P09601 288 aa34.24■■■■□ 3.07
SHOX2-204ENST00000483851 PPP4R2Q9NY27 417 aa34.24■■■■□ 3.07
SHOX2-204ENST00000483851 NFAT5O94916 1531 aa34.24■■■■□ 3.07
SHOX2-204ENST00000483851 ARHGEF10O15013 1369 aa34.23■■■■□ 3.07
SHOX2-204ENST00000483851 SOX12O15370 315 aa34.23■■■■□ 3.07
SHOX2-204ENST00000483851 TRIM35Q9UPQ4 493 aa34.23■■■■□ 3.07
SHOX2-204ENST00000483851 PHRF1Q9P1Y6 1649 aaKnown RBP34.23■■■■□ 3.07
SHOX2-204ENST00000483851 RIPK4P57078 832 aa34.22■■■■□ 3.07
SHOX2-204ENST00000483851 NUTM2GQ5VZR2 741 aa34.22■■■■□ 3.07
SHOX2-204ENST00000483851 MYH16Q9H6N6 1097 aa34.22■■■■□ 3.07
SHOX2-204ENST00000483851 SLIT3O75094 1523 aa34.22■■■■□ 3.07
SHOX2-204ENST00000483851 NFE2L2Q16236 605 aa34.22■■■■□ 3.07
SHOX2-204ENST00000483851 ZNF335Q9H4Z2 1342 aaPredicted RBP34.2■■■■□ 3.07
SHOX2-204ENST00000483851 HOXC9P31274 260 aa34.18■■■■□ 3.06
SHOX2-204ENST00000483851 ALS2Q96Q42 1657 aa34.18■■■■□ 3.06
SHOX2-204ENST00000483851 NPHP3Q7Z494 1330 aa34.18■■■■□ 3.06
SHOX2-204ENST00000483851 LTN1O94822 1766 aa34.18■■■■□ 3.06
SHOX2-204ENST00000483851 USP19O94966 1318 aa34.18■■■■□ 3.06
SHOX2-204ENST00000483851 PHACTR3Q96KR7 559 aa34.16■■■■□ 3.06
SHOX2-204ENST00000483851 KDRP35968 1356 aa34.15■■■■□ 3.06
SHOX2-204ENST00000483851 LMOD3Q0VAK6 560 aa34.15■■■■□ 3.06
SHOX2-204ENST00000483851 SULT6B1Q6IMI4 303 aa34.15■■■■□ 3.06
SHOX2-204ENST00000483851 CALD1Q05682 793 aaKnown RBP34.14■■■■□ 3.06
SHOX2-204ENST00000483851 IGSF1Q8N6C5 1336 aa34.13■■■■□ 3.05
SHOX2-204ENST00000483851 IP6K1Q92551 441 aa34.13■■■■□ 3.05
SHOX2-204ENST00000483851 GOLGA6L2Q8N9W4 650 aaPredicted RBP34.12■■■■□ 3.05
SHOX2-204ENST00000483851 CT47B1P0C2W7 299 aaPredicted RBP34.11■■■■□ 3.05
SHOX2-204ENST00000483851 XPCQ01831 940 aaPredicted RBP34.11■■■■□ 3.05
SHOX2-204ENST00000483851 GCP02774 474 aa34.1■■■■□ 3.05
SHOX2-204ENST00000483851 DLG5Q8TDM6 1919 aa34.08■■■■□ 3.05
SHOX2-204ENST00000483851 AEBP1Q8IUX7 1158 aa34.07■■■■□ 3.05
SHOX2-204ENST00000483851 EYA1Q99502 592 aa34.07■■■■□ 3.04
SHOX2-204ENST00000483851 PXDNQ92626 1479 aa34.06■■■■□ 3.04
SHOX2-204ENST00000483851 ARHGEF25Q86VW2 580 aa34.05■■■■□ 3.04
SHOX2-204ENST00000483851 TNS3Q68CZ2 1445 aa34.04■■■■□ 3.04
SHOX2-204ENST00000483851 SLAIN2Q9P270 581 aa34.03■■■■□ 3.04
SHOX2-204ENST00000483851 LMOD2Q6P5Q4 547 aa34.03■■■■□ 3.04
SHOX2-204ENST00000483851 BRINP3Q76B58 766 aa34.03■■■■□ 3.04
SHOX2-204ENST00000483851 FANCIQ9NVI1 1328 aa34.03■■■■□ 3.04
SHOX2-204ENST00000483851 MED1Q15648 1581 aaPredicted RBP33.99■■■■□ 3.03
SHOX2-204ENST00000483851 SPATA31A3Q5VYP0 1347 aa33.99■■■■□ 3.03
SHOX2-204ENST00000483851 IFT57Q9NWB7 429 aa33.97■■■■□ 3.03
SHOX2-204ENST00000483851 GNAI1P63096 354 aa33.97■■■■□ 3.03
SHOX2-204ENST00000483851 RARSP54136 660 aaKnown RBP33.95■■■■□ 3.02
SHOX2-204ENST00000483851 GAS2L2Q8NHY3 880 aa33.95■■■■□ 3.02
SHOX2-204ENST00000483851 ABCC6O95255 1503 aa33.94■■■■□ 3.02
SHOX2-204ENST00000483851 PLIN1O60240 522 aa33.93■■■■□ 3.02
SHOX2-204ENST00000483851 ZNF853P0CG23 659 aa33.93■■■■□ 3.02
SHOX2-204ENST00000483851 SOS2Q07890 1332 aaPredicted RBP33.93■■■■□ 3.02
SHOX2-204ENST00000483851 DDX17Q92841 729 aaKnown RBP33.93■■■■□ 3.02
SHOX2-204ENST00000483851 TSR2Q969E8 191 aaKnown RBP33.93■■■■□ 3.02
SHOX2-204ENST00000483851 B4GALNT3Q6L9W6 998 aa33.92■■■■□ 3.02
SHOX2-204ENST00000483851 CRYBG1Q9Y4K1 1723 aa33.91■■■■□ 3.02
SHOX2-204ENST00000483851 ZNF428Q96B54 188 aa33.9■■■■□ 3.02
SHOX2-204ENST00000483851 CFAP44Q96MT7 982 aa33.9■■■■□ 3.02
SHOX2-204ENST00000483851 HTATSF1O43719 755 aaKnown RBP33.9■■■■□ 3.02
SHOX2-204ENST00000483851 BCAR3O75815 825 aa33.9■■■■□ 3.02
SHOX2-204ENST00000483851 EXOSC9Q06265 439 aaKnown RBP33.9■■■■□ 3.02
SHOX2-204ENST00000483851 NCAPD2Q15021 1401 aa33.9■■■■□ 3.02
SHOX2-204ENST00000483851 LTV1Q96GA3 475 aaPredicted RBP33.89■■■■□ 3.02
SHOX2-204ENST00000483851 EXOC6Q8TAG9 804 aa33.88■■■■□ 3.01
SHOX2-204ENST00000483851 PDE3AQ14432 1141 aa33.87■■■■□ 3.01
SHOX2-204ENST00000483851 MTHFSDQ2M296 383 aaKnown RBP33.87■■■■□ 3.01
SHOX2-204ENST00000483851 RBM19Q9Y4C8 960 aaKnown RBP33.87■■■■□ 3.01
SHOX2-204ENST00000483851 CAMTA1Q9Y6Y1 1673 aa33.86■■■■□ 3.01
SHOX2-204ENST00000483851 NHSL1Q5SYE7 1610 aa33.86■■■■□ 3.01
SHOX2-204ENST00000483851 CCDC136Q96JN2 1154 aa33.84■■■■□ 3.01
SHOX2-204ENST00000483851 THUMPD2Q9BTF0 503 aaKnown RBP33.84■■■■□ 3.01
SHOX2-204ENST00000483851 CPDO75976 1380 aa33.84■■■■□ 3.01
SHOX2-204ENST00000483851 ZBTB7CA1YPR0 619 aa33.83■■■■□ 3.01
SHOX2-204ENST00000483851 NBPF6Q5VWK0 638 aa33.83■■■■□ 3.01
SHOX2-204ENST00000483851 NBPF4Q96M43 638 aa33.83■■■■□ 3.01
SHOX2-204ENST00000483851 FAM83GA6ND36 823 aa33.82■■■■□ 3
SHOX2-204ENST00000483851 RTF1Q92541 710 aaKnown RBP33.82■■■■□ 3
SHOX2-204ENST00000483851 CRBNQ96SW2 442 aa33.82■■■■□ 3
SHOX2-204ENST00000483851 ANKRD24Q8TF21 1146 aa33.81■■■■□ 3
SHOX2-204ENST00000483851 COL18A1P39060 1754 aa33.81■■■■□ 3
SHOX2-204ENST00000483851 LTBP4Q8N2S1 1624 aa33.8■■■■□ 3
SHOX2-204ENST00000483851 ALDH1L2Q3SY69 923 aa33.8■■■■□ 3
SHOX2-204ENST00000483851 C20orf194Q5TEA3 1177 aa33.8■■■■□ 3
SHOX2-204ENST00000483851 MBIPQ9NS73 344 aa33.8■■■■□ 3
SHOX2-204ENST00000483851 LAS1LQ9Y4W2 734 aaKnown RBP33.8■■■■□ 3
SHOX2-204ENST00000483851 RGPD2P0DJD1 1756 aa33.79■■■■□ 3
SHOX2-204ENST00000483851 ZC3H6P61129 1189 aaKnown RBP33.78■■■■□ 3
SHOX2-204ENST00000483851 ERBB3P21860 1342 aa33.77■■■■□ 3
SHOX2-204ENST00000483851 CANXP27824 592 aaKnown RBP33.77■■■■□ 3
SHOX2-204ENST00000483851 DCTN1Q14203 1278 aa33.77■■■■□ 3
SHOX2-204ENST00000483851 AXIN2Q9Y2T1 843 aa33.77■■■■□ 3
SHOX2-204ENST00000483851 CRB1P82279 1406 aa33.77■■■■□ 3
SHOX2-204ENST00000483851 LMO7Q8WWI1 1683 aa33.76■■■■□ 3
SHOX2-204ENST00000483851 FAM208AQ9UK61 1670 aaKnown RBP33.76■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms