RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 IBTKQ9P2D0 1353 aaPredicted RBP16.55■□□□□ 0.24
USP40-214ENST00000483519 K7ELQ4 463 aaPredicted RBP16.55■□□□□ 0.24
USP40-214ENST00000483519 LNPKQ9C0E8 428 aa16.55■□□□□ 0.24
USP40-214ENST00000483519 PPP1R9BQ96SB3 815 aa16.54■□□□□ 0.24
USP40-214ENST00000483519 TMPOP42166 694 aaKnown RBP16.54■□□□□ 0.24
USP40-214ENST00000483519 TMEM131LA2VDJ0 1609 aa16.54■□□□□ 0.24
USP40-214ENST00000483519 A2ML1A8K2U0 1454 aa16.54■□□□□ 0.24
USP40-214ENST00000483519 NASPP49321 788 aaPredicted RBP16.54■□□□□ 0.24
USP40-214ENST00000483519 PLCB2Q00722 1185 aa16.53■□□□□ 0.24
USP40-214ENST00000483519 CLEC17AQ6ZS10 378 aa16.52■□□□□ 0.24
USP40-214ENST00000483519 ZSCAN30Q86W11 494 aa16.52■□□□□ 0.24
USP40-214ENST00000483519 PLEKHF1Q96S99 279 aa16.52■□□□□ 0.24
USP40-214ENST00000483519 KIF2CQ99661 725 aa16.52■□□□□ 0.24
USP40-214ENST00000483519 C14orf93Q9H972 538 aaKnown RBP16.52■□□□□ 0.24
USP40-214ENST00000483519 TRIM35Q9UPQ4 493 aa16.52■□□□□ 0.24
USP40-214ENST00000483519 CHMP4BQ9H444 224 aaKnown RBP16.52■□□□□ 0.23
USP40-214ENST00000483519 IDI1Q13907 227 aa16.51■□□□□ 0.23
USP40-214ENST00000483519 KLHL40Q2TBA0 621 aa16.51■□□□□ 0.23
USP40-214ENST00000483519 ALDH1L2Q3SY69 923 aa16.51■□□□□ 0.23
USP40-214ENST00000483519 PDCL3Q9H2J4 239 aa16.51■□□□□ 0.23
USP40-214ENST00000483519 STAG3Q9UJ98 1225 aa16.51■□□□□ 0.23
USP40-214ENST00000483519 EVC2Q86UK5 1308 aa16.51■□□□□ 0.23
USP40-214ENST00000483519 U2SURPO15042 1029 aaKnown RBP16.51■□□□□ 0.23
USP40-214ENST00000483519 GCC1Q96CN9 775 aa16.51■□□□□ 0.23
USP40-214ENST00000483519 ZNF142P52746 1687 aaPredicted RBP16.5■□□□□ 0.23
USP40-214ENST00000483519 THEMISQ8N1K5 641 aaPredicted RBP16.5■□□□□ 0.23
USP40-214ENST00000483519 CEP170BQ9Y4F5 1589 aaPredicted RBP16.5■□□□□ 0.23
USP40-214ENST00000483519 MSNP26038 577 aaKnown RBP16.5■□□□□ 0.23
USP40-214ENST00000483519 KIAA1211Q6ZU35 1233 aa16.5■□□□□ 0.23
USP40-214ENST00000483519 MED14O60244 1454 aa16.5■□□□□ 0.23
USP40-214ENST00000483519 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.49■□□□□ 0.23
USP40-214ENST00000483519 DDX49Q9Y6V7 483 aaKnown RBP16.49■□□□□ 0.23
USP40-214ENST00000483519 CHMP4AQ9BY43 222 aa16.48■□□□□ 0.23
USP40-214ENST00000483519 FOXD4L1Q9NU39 408 aa16.48■□□□□ 0.23
USP40-214ENST00000483519 CD2BP2O95400 341 aaKnown RBP16.48■□□□□ 0.23
USP40-214ENST00000483519 CHGAP10645 457 aaKnown RBP16.48■□□□□ 0.23
USP40-214ENST00000483519 SSFA2P28290 1259 aa16.48■□□□□ 0.23
USP40-214ENST00000483519 PDE4CQ08493 712 aa16.48■□□□□ 0.23
USP40-214ENST00000483519 TERF1P54274 439 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 TMEM132AQ24JP5 1023 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 ANKRD45Q5TZF3 282 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 TBC1D9Q6ZT07 1266 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 ZNF428Q96B54 188 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 COL3A1P02461 1466 aaPredicted RBP16.47■□□□□ 0.23
USP40-214ENST00000483519 OFD1O75665 1012 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 TULP4Q9NRJ4 1543 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 RIPK4P57078 832 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 LMTK3Q96Q04 1460 aa16.47■□□□□ 0.23
USP40-214ENST00000483519 ARHGEF28Q8N1W1 1705 aaKnown RBP16.46■□□□□ 0.23
USP40-214ENST00000483519 BAG4O95429 457 aaKnown RBP16.46■□□□□ 0.23
USP40-214ENST00000483519 CFAP44Q96MT7 982 aa16.46■□□□□ 0.23
USP40-214ENST00000483519 HS1BP3Q53T59 392 aa16.46■□□□□ 0.22
USP40-214ENST00000483519 GAS2L2Q8NHY3 880 aa16.46■□□□□ 0.22
USP40-214ENST00000483519 BRPF1P55201 1214 aaPredicted RBP16.45■□□□□ 0.22
USP40-214ENST00000483519 ZNF445P59923 1031 aa16.45■□□□□ 0.22
USP40-214ENST00000483519 TMEM132EQ6IEE7 984 aa16.45■□□□□ 0.22
USP40-214ENST00000483519 PPIP5K1Q6PFW1 1433 aa16.45■□□□□ 0.22
USP40-214ENST00000483519 HDGFP51858 240 aaKnown RBP16.45■□□□□ 0.22
USP40-214ENST00000483519 CDC45O75419 566 aa16.44■□□□□ 0.22
USP40-214ENST00000483519 DLC1Q96QB1 1528 aa16.44■□□□□ 0.22
USP40-214ENST00000483519 VGFO15240 615 aaPredicted RBP16.44■□□□□ 0.22
USP40-214ENST00000483519 NUCB2P80303 420 aa16.44■□□□□ 0.22
USP40-214ENST00000483519 UBR1Q8IWV7 1749 aa16.43■□□□□ 0.22
USP40-214ENST00000483519 RBM42Q9BTD8 480 aaKnown RBP16.43■□□□□ 0.22
USP40-214ENST00000483519 ANKRD26Q9UPS8 1709 aa16.42■□□□□ 0.22
USP40-214ENST00000483519 CALD1Q05682 793 aaKnown RBP16.42■□□□□ 0.22
USP40-214ENST00000483519 RABEP1Q15276 862 aa16.42■□□□□ 0.22
USP40-214ENST00000483519 ZBTB7BO15156 539 aaPredicted RBP16.42■□□□□ 0.22
USP40-214ENST00000483519 ARHGAP45Q92619 1136 aa16.41■□□□□ 0.22
USP40-214ENST00000483519 A0A1W2PP64 1363 aa16.41■□□□□ 0.22
USP40-214ENST00000483519 PIK3R4Q99570 1358 aa16.41■□□□□ 0.22
USP40-214ENST00000483519 FBXO3Q9UK99 471 aa16.41■□□□□ 0.22
USP40-214ENST00000483519 EID1Q9Y6B2 187 aa16.41■□□□□ 0.22
USP40-214ENST00000483519 PTCH1Q13635 1447 aa16.41■□□□□ 0.22
USP40-214ENST00000483519 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.4■□□□□ 0.22
USP40-214ENST00000483519 ANKLE2Q86XL3 938 aa16.4■□□□□ 0.22
USP40-214ENST00000483519 DHX37Q8IY37 1157 aaKnown RBP16.4■□□□□ 0.22
USP40-214ENST00000483519 MAP7D2Q96T17 732 aa16.4■□□□□ 0.22
USP40-214ENST00000483519 TMEM2Q9UHN6 1383 aa16.4■□□□□ 0.22
USP40-214ENST00000483519 DIAPH1O60610 1272 aaKnown RBP16.39■□□□□ 0.22
USP40-214ENST00000483519 MCTP1Q6DN14 999 aa16.39■□□□□ 0.22
USP40-214ENST00000483519 CABP2Q9NPB3 220 aa16.39■□□□□ 0.22
USP40-214ENST00000483519 ZSCAN23Q3MJ62 389 aa16.39■□□□□ 0.21
USP40-214ENST00000483519 GGNBP2Q9H3C7 697 aa16.39■□□□□ 0.21
USP40-214ENST00000483519 SLIT1O75093 1534 aa16.39■□□□□ 0.21
USP40-214ENST00000483519 HSPA2P54652 639 aa16.39■□□□□ 0.21
USP40-214ENST00000483519 CAVIN1Q6NZI2 390 aaKnown RBP16.39■□□□□ 0.21
USP40-214ENST00000483519 NOL7Q9UMY1 257 aaKnown RBP16.39■□□□□ 0.21
USP40-214ENST00000483519 ARHGAP23Q9P227 1491 aa16.38■□□□□ 0.21
USP40-214ENST00000483519 ZNF500O60304 480 aaPredicted RBP16.38■□□□□ 0.21
USP40-214ENST00000483519 NCLP19338 710 aaKnown RBP16.38■□□□□ 0.21
USP40-214ENST00000483519 C1orf115Q9H7X2 142 aa16.38■□□□□ 0.21
USP40-214ENST00000483519 KNDC1Q76NI1 1749 aa16.38■□□□□ 0.21
USP40-214ENST00000483519 SETD1AO15047 1707 aaKnown RBP16.37■□□□□ 0.21
USP40-214ENST00000483519 CWC22Q9HCG8 908 aaKnown RBP16.37■□□□□ 0.21
USP40-214ENST00000483519 CYP2E1P05181 493 aaPredicted RBP16.37■□□□□ 0.21
USP40-214ENST00000483519 PDLIM2Q96JY6 352 aa16.37■□□□□ 0.21
USP40-214ENST00000483519 LMBRD1Q9NUN5 540 aa16.37■□□□□ 0.21
USP40-214ENST00000483519 CDC42BPGQ6DT37 1551 aa16.37■□□□□ 0.21
USP40-214ENST00000483519 FCHSD2O94868 740 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms