RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 NLRP6P59044 892 aa23.37■■□□□ 1.33
DDX56-210ENST00000479440 CDCA7Q9BWT1 371 aaPredicted RBP23.37■■□□□ 1.33
DDX56-210ENST00000479440 MYOM1P52179 1685 aa23.36■■□□□ 1.33
DDX56-210ENST00000479440 WDR17Q8IZU2 1322 aa23.35■■□□□ 1.33
DDX56-210ENST00000479440 PIK3C2AO00443 1686 aa23.35■■□□□ 1.33
DDX56-210ENST00000479440 CPSF1Q10570 1443 aaKnown RBP23.35■■□□□ 1.33
DDX56-210ENST00000479440 CABP2Q9NPB3 220 aa23.35■■□□□ 1.33
DDX56-210ENST00000479440 COL18A1P39060 1754 aa23.33■■□□□ 1.33
DDX56-210ENST00000479440 ZBTB7AO95365 584 aa23.31■■□□□ 1.32
DDX56-210ENST00000479440 NBPF1Q3BBV0 1214 aa23.31■■□□□ 1.32
DDX56-210ENST00000479440 STK32BQ9NY57 414 aa23.31■■□□□ 1.32
DDX56-210ENST00000479440 MARCH10Q8NA82 808 aaPredicted RBP23.3■■□□□ 1.32
DDX56-210ENST00000479440 CABP1Q9NZU7 370 aa23.3■■□□□ 1.32
DDX56-210ENST00000479440 PTF1AQ7RTS3 328 aa23.29■■□□□ 1.32
DDX56-210ENST00000479440 PTGER2P43116 358 aa23.28■■□□□ 1.32
DDX56-210ENST00000479440 KCNH5Q8NCM2 988 aa23.28■■□□□ 1.32
DDX56-210ENST00000479440 ABCC6O95255 1503 aa23.28■■□□□ 1.32
DDX56-210ENST00000479440 TNS2Q63HR2 1409 aa23.27■■□□□ 1.32
DDX56-210ENST00000479440 TRPM1Q7Z4N2 1603 aa23.27■■□□□ 1.32
DDX56-210ENST00000479440 CSB-PGBD3P0DP91 1061 aa23.27■■□□□ 1.32
DDX56-210ENST00000479440 PROM2Q8N271 834 aa23.27■■□□□ 1.32
DDX56-210ENST00000479440 CARD10Q9BWT7 1032 aa23.27■■□□□ 1.32
DDX56-210ENST00000479440 PDGFDQ9GZP0 370 aaPredicted RBP23.27■■□□□ 1.32
DDX56-210ENST00000479440 TXNRD1Q16881 649 aa23.26■■□□□ 1.31
DDX56-210ENST00000479440 AXIN2Q9Y2T1 843 aa23.26■■□□□ 1.31
DDX56-210ENST00000479440 CCDC7Q96M83 1385 aa23.26■■□□□ 1.31
DDX56-210ENST00000479440 SLC15A2Q16348 729 aa23.25■■□□□ 1.31
DDX56-210ENST00000479440 ZNF784Q8NCA9 323 aaPredicted RBP23.25■■□□□ 1.31
DDX56-210ENST00000479440 ARHGEF25Q86VW2 580 aa23.24■■□□□ 1.31
DDX56-210ENST00000479440 MTFR1LQ9H019 292 aa23.24■■□□□ 1.31
DDX56-210ENST00000479440 ATF5Q9Y2D1 282 aaPredicted RBP23.24■■□□□ 1.31
DDX56-210ENST00000479440 NHSQ6T4R5 1651 aa23.24■■□□□ 1.31
DDX56-210ENST00000479440 EVC2Q86UK5 1308 aa23.24■■□□□ 1.31
DDX56-210ENST00000479440 EXOC5O00471 708 aa23.23■■□□□ 1.31
DDX56-210ENST00000479440 FHDC1Q9C0D6 1143 aaPredicted RBP23.23■■□□□ 1.31
DDX56-210ENST00000479440 TTC21AQ8NDW8 1320 aa23.22■■□□□ 1.31
DDX56-210ENST00000479440 NFAT5O94916 1531 aa23.22■■□□□ 1.31
DDX56-210ENST00000479440 SYT17Q9BSW7 474 aa23.21■■□□□ 1.31
DDX56-210ENST00000479440 ZNF692Q9BU19 519 aaPredicted RBP23.21■■□□□ 1.31
DDX56-210ENST00000479440 TTC21BQ7Z4L5 1316 aa23.21■■□□□ 1.31
DDX56-210ENST00000479440 RGPD5Q99666 1765 aa23.2■■□□□ 1.3
DDX56-210ENST00000479440 PAPPAQ13219 1627 aa23.19■■□□□ 1.3
DDX56-210ENST00000479440 SOX12O15370 315 aa23.19■■□□□ 1.3
DDX56-210ENST00000479440 MAP3K5Q99683 1374 aa23.16■■□□□ 1.3
DDX56-210ENST00000479440 SGIP1Q9BQI5 828 aa23.16■■□□□ 1.3
DDX56-210ENST00000479440 ARXQ96QS3 562 aa23.14■■□□□ 1.29
DDX56-210ENST00000479440 KTN1Q86UP2 1357 aaKnown RBP23.14■■□□□ 1.29
DDX56-210ENST00000479440 SENP3-EIF4A1A0A087X0R7 540 aa23.13■■□□□ 1.29
DDX56-210ENST00000479440 CHD4Q14839 1912 aa23.13■■□□□ 1.29
DDX56-210ENST00000479440 MON2Q7Z3U7 1717 aa23.12■■□□□ 1.29
DDX56-210ENST00000479440 ERBB3P21860 1342 aa23.11■■□□□ 1.29
DDX56-210ENST00000479440 ACSBG1Q96GR2 724 aa23.11■■□□□ 1.29
DDX56-210ENST00000479440 USP54Q70EL1 1684 aa23.11■■□□□ 1.29
DDX56-210ENST00000479440 BTAF1O14981 1849 aa23.1■■□□□ 1.29
DDX56-210ENST00000479440 C1QTNF8P60827 252 aa23.09■■□□□ 1.29
DDX56-210ENST00000479440 ROCK2O75116 1388 aaKnown RBP23.09■■□□□ 1.29
DDX56-210ENST00000479440 IL2RBP14784 551 aa23.08■■□□□ 1.29
DDX56-210ENST00000479440 USP31Q70CQ4 1352 aa23.07■■□□□ 1.28
DDX56-210ENST00000479440 NLRP2Q9NX02 1062 aa23.07■■□□□ 1.28
DDX56-210ENST00000479440 UTRNP46939 3433 aa23.06■■□□□ 1.28
DDX56-210ENST00000479440 QSER1Q2KHR3 1735 aa23.05■■□□□ 1.28
DDX56-210ENST00000479440 LTN1O94822 1766 aa23.05■■□□□ 1.28
DDX56-210ENST00000479440 ZNF827Q17R98 1081 aa23.05■■□□□ 1.28
DDX56-210ENST00000479440 GPR162Q16538 588 aa23.04■■□□□ 1.28
DDX56-210ENST00000479440 L3MBTL2Q969R5 705 aa23.04■■□□□ 1.28
DDX56-210ENST00000479440 POLD1P28340 1107 aa23.02■■□□□ 1.28
DDX56-210ENST00000479440 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.02■■□□□ 1.28
DDX56-210ENST00000479440 SLC16A10Q8TF71 515 aa23.02■■□□□ 1.28
DDX56-210ENST00000479440 SLC27A3Q5K4L6 730 aa23.01■■□□□ 1.27
DDX56-210ENST00000479440 ANKRD24Q8TF21 1146 aa23.01■■□□□ 1.27
DDX56-210ENST00000479440 SBNO2Q9Y2G9 1366 aa23.01■■□□□ 1.27
DDX56-210ENST00000479440 GIGYF1O75420 1035 aaPredicted RBP23■■□□□ 1.27
DDX56-210ENST00000479440 KLHL34Q8N239 644 aa23■■□□□ 1.27
DDX56-210ENST00000479440 FAM208AQ9UK61 1670 aaKnown RBP23■■□□□ 1.27
DDX56-210ENST00000479440 AKT1S1Q96B36 256 aa22.99■■□□□ 1.27
DDX56-210ENST00000479440 LRRC4BQ9NT99 713 aa22.99■■□□□ 1.27
DDX56-210ENST00000479440 COL24A1Q17RW2 1714 aa22.98■■□□□ 1.27
DDX56-210ENST00000479440 NME9Q86XW9 330 aa22.97■■□□□ 1.27
DDX56-210ENST00000479440 EDC4Q6P2E9 1401 aaKnown RBP22.97■■□□□ 1.27
DDX56-210ENST00000479440 CD163L1Q9NR16 1453 aa22.97■■□□□ 1.27
DDX56-210ENST00000479440 HDGFL2Q7Z4V5 671 aaPredicted RBP22.96■■□□□ 1.27
DDX56-210ENST00000479440 PELP1Q8IZL8 1130 aaKnown RBP22.96■■□□□ 1.27
DDX56-210ENST00000479440 PNPLA7Q6ZV29 1317 aa22.95■■□□□ 1.26
DDX56-210ENST00000479440 TFCP2L1Q9NZI6 479 aa22.93■■□□□ 1.26
DDX56-210ENST00000479440 TUBGCP6Q96RT7 1819 aa22.93■■□□□ 1.26
DDX56-210ENST00000479440 DOT1LQ8TEK3 1739 aa22.93■■□□□ 1.26
DDX56-210ENST00000479440 SHANK3Q9BYB0 1731 aa22.91■■□□□ 1.26
DDX56-210ENST00000479440 ANKRD36BQ8N2N9 1353 aa22.91■■□□□ 1.26
DDX56-210ENST00000479440 DDX54Q8TDD1 881 aaKnown RBP22.91■■□□□ 1.26
DDX56-210ENST00000479440 TMC1Q8TDI8 760 aa22.91■■□□□ 1.26
DDX56-210ENST00000479440 SYTL4Q96C24 671 aaPredicted RBP22.9■■□□□ 1.26
DDX56-210ENST00000479440 LY75O60449 1722 aa22.89■■□□□ 1.26
DDX56-210ENST00000479440 NLGN2Q8NFZ4 835 aa22.88■■□□□ 1.25
DDX56-210ENST00000479440 IP6K1Q92551 441 aa22.88■■□□□ 1.25
DDX56-210ENST00000479440 TERF2IPQ9NYB0 399 aa22.88■■□□□ 1.25
DDX56-210ENST00000479440 A0A1W2PP64 1363 aa22.88■■□□□ 1.25
DDX56-210ENST00000479440 GRIN3BO60391 1043 aa22.87■■□□□ 1.25
DDX56-210ENST00000479440 SIN3AQ96ST3 1273 aa22.86■■□□□ 1.25
DDX56-210ENST00000479440 NSD2O96028 1365 aa22.86■■□□□ 1.25
DDX56-210ENST00000479440 LTV1Q96GA3 475 aaPredicted RBP22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms