RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 TRMT44Q8IYL2 757 aaKnown RBP9.06□□□□□ -0.96
PRPF40A-208ENST00000472760 PHTF2Q8N3S3 785 aa9.06□□□□□ -0.96
PRPF40A-208ENST00000472760 USP17L5A8MUK1 530 aa9.05□□□□□ -0.96
PRPF40A-208ENST00000472760 CDCA8Q53HL2 280 aa9.05□□□□□ -0.96
PRPF40A-208ENST00000472760 PLPP7Q8NBV4 271 aa9.05□□□□□ -0.96
PRPF40A-208ENST00000472760 VRTNQ9H8Y1 702 aa9.05□□□□□ -0.96
PRPF40A-208ENST00000472760 USP17L3A6NCW0 530 aa9.04□□□□□ -0.96
PRPF40A-208ENST00000472760 USP17L4A6NCW7 530 aa9.04□□□□□ -0.96
PRPF40A-208ENST00000472760 MAP7D1Q3KQU3 841 aa9.04□□□□□ -0.96
PRPF40A-208ENST00000472760 USP17L2Q6R6M4 530 aa9.04□□□□□ -0.96
PRPF40A-208ENST00000472760 VASH1Q7L8A9 365 aaPredicted RBP9.04□□□□□ -0.96
PRPF40A-208ENST00000472760 USP17L1Q7RTZ2 530 aa9.04□□□□□ -0.96
PRPF40A-208ENST00000472760 DEPDC4Q8N2C3 294 aa9.04□□□□□ -0.96
PRPF40A-208ENST00000472760 LZTS3O60299 673 aaPredicted RBP9.03□□□□□ -0.96
PRPF40A-208ENST00000472760 SRPK2P78362 688 aaKnown RBP9.03□□□□□ -0.96
PRPF40A-208ENST00000472760 ARID5BQ14865 1188 aa9.03□□□□□ -0.96
PRPF40A-208ENST00000472760 PLEKHM2Q8IWE5 1019 aa9.03□□□□□ -0.96
PRPF40A-208ENST00000472760 EMID1Q96A84 441 aaPredicted RBP9.03□□□□□ -0.96
PRPF40A-208ENST00000472760 KCTD15Q96SI1 283 aaPredicted RBP9.03□□□□□ -0.96
PRPF40A-208ENST00000472760 A0A0G2JS52 829 aa9.02□□□□□ -0.97
PRPF40A-208ENST00000472760 PDIA4P13667 645 aaKnown RBP9.02□□□□□ -0.97
PRPF40A-208ENST00000472760 DOLKQ9UPQ8 538 aa9.02□□□□□ -0.97
PRPF40A-208ENST00000472760 ESPNB1AK53 854 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 RAB15P59190 212 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 NCOA4Q13772 614 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 EML3Q32P44 896 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 TSGA10IPQ3SY00 556 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 SPRYD7Q5W111 196 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 CCDC125Q86Z20 511 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 SEPT12Q8IYM1 358 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 CHIC2Q9UKJ5 165 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 MAP4K5Q9Y4K4 846 aa9.01□□□□□ -0.97
PRPF40A-208ENST00000472760 KANK4Q5T7N3 995 aaPredicted RBP9□□□□□ -0.97
PRPF40A-208ENST00000472760 RETREG2Q8NC44 543 aa9□□□□□ -0.97
PRPF40A-208ENST00000472760 CCDC85AQ96PX6 553 aaPredicted RBP9□□□□□ -0.97
PRPF40A-208ENST00000472760 MKRN1Q9UHC7 482 aaKnown RBP9□□□□□ -0.97
PRPF40A-208ENST00000472760 WNT7AO00755 349 aa8.99□□□□□ -0.97
PRPF40A-208ENST00000472760 CSB-PGBD3P0DP91 1061 aa8.99□□□□□ -0.97
PRPF40A-208ENST00000472760 OXLD1Q5BKU9 147 aa8.99□□□□□ -0.97
PRPF40A-208ENST00000472760 TRAF7Q6Q0C0 670 aa8.99□□□□□ -0.97
PRPF40A-208ENST00000472760 CDK15Q96Q40 435 aa8.99□□□□□ -0.97
PRPF40A-208ENST00000472760 PRKD2Q9BZL6 878 aa8.99□□□□□ -0.97
PRPF40A-208ENST00000472760 PCDHB11Q9Y5F2 797 aa8.99□□□□□ -0.97
PRPF40A-208ENST00000472760 ATP5J2-PTCD1G3V325 749 aa8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 ATG7O95352 703 aa8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 PDE4CQ08493 712 aa8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 INTS6LQ5JSJ4 861 aaKnown RBP8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 ZNF697Q5TEC3 545 aa8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 LARP1Q6PKG0 1096 aaKnown RBP8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 ZNF598Q86UK7 904 aaKnown RBP8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 MRGPRX2Q96LB1 330 aa8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 TLL2Q9Y6L7 1015 aa8.98□□□□□ -0.97
PRPF40A-208ENST00000472760 SIAH2O43255 324 aa8.97□□□□□ -0.97
PRPF40A-208ENST00000472760 MPNDQ8N594 471 aa8.97□□□□□ -0.97
PRPF40A-208ENST00000472760 SIRT1Q96EB6 747 aa8.97□□□□□ -0.97
PRPF40A-208ENST00000472760 NOD1Q9Y239 953 aa8.97□□□□□ -0.97
PRPF40A-208ENST00000472760 RASA1P20936 1047 aa8.96□□□□□ -0.98
PRPF40A-208ENST00000472760 FSHRP23945 695 aa8.96□□□□□ -0.98
PRPF40A-208ENST00000472760 FOXC1Q12948 553 aa8.96□□□□□ -0.98
PRPF40A-208ENST00000472760 USP4Q13107 963 aa8.96□□□□□ -0.98
PRPF40A-208ENST00000472760 TRIM50Q86XT4 487 aa8.96□□□□□ -0.98
PRPF40A-208ENST00000472760 CDCA7Q9BWT1 371 aaPredicted RBP8.96□□□□□ -0.98
PRPF40A-208ENST00000472760 V9GY48 417 aaPredicted RBP8.96□□□□□ -0.98
PRPF40A-208ENST00000472760 GRM5P41594 1212 aa8.95□□□□□ -0.98
PRPF40A-208ENST00000472760 DHX9Q08211 1270 aaKnown RBP8.95□□□□□ -0.98
PRPF40A-208ENST00000472760 TRIM52Q96A61 297 aa8.95□□□□□ -0.98
PRPF40A-208ENST00000472760 ESF1Q9H501 851 aaKnown RBP8.95□□□□□ -0.98
PRPF40A-208ENST00000472760 ERVH48-1M5A8F1 160 aa8.94□□□□□ -0.98
PRPF40A-208ENST00000472760 ADH1CP00326 375 aa8.94□□□□□ -0.98
PRPF40A-208ENST00000472760 ATP1A2P50993 1020 aa8.94□□□□□ -0.98
PRPF40A-208ENST00000472760 OGFOD1Q8N543 542 aa8.94□□□□□ -0.98
PRPF40A-208ENST00000472760 FAM196BA6NMK8 535 aa8.93□□□□□ -0.98
PRPF40A-208ENST00000472760 MYCP01106 439 aaPredicted RBP8.93□□□□□ -0.98
PRPF40A-208ENST00000472760 NR5A1Q13285 461 aa8.93□□□□□ -0.98
PRPF40A-208ENST00000472760 TRAIPQ9BWF2 469 aa8.93□□□□□ -0.98
PRPF40A-208ENST00000472760 DNAAF2Q9NVR5 837 aaKnown RBP8.93□□□□□ -0.98
PRPF40A-208ENST00000472760 NOVA2Q9UNW9 492 aaKnown RBP8.93□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L15C9J2P7 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L10C9JJH3 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L13C9JLJ4 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L12C9JPN9 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L11C9JVI0 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L21D6R901 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L18D6R9N7 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L22D6RA61 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L17D6RBQ6 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L19D6RCP7 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L20D6RJB6 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 ALDH1A1P00352 501 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 GTF2IP78347 998 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USP17L24Q0WX57 530 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 ELOAQ14241 798 aaKnown RBP8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 CRTC2Q53ET0 693 aaPredicted RBP8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 CCDC116Q8IYX3 515 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 USTQ9Y2C2 406 aa8.92□□□□□ -0.98
PRPF40A-208ENST00000472760 PTK7Q13308 1070 aa8.91□□□□□ -0.98
PRPF40A-208ENST00000472760 PKD2L1Q9P0L9 805 aa8.91□□□□□ -0.98
PRPF40A-208ENST00000472760 RBM19Q9Y4C8 960 aaKnown RBP8.91□□□□□ -0.98
PRPF40A-208ENST00000472760 WASF2Q9Y6W5 498 aa8.91□□□□□ -0.98
PRPF40A-208ENST00000472760 CLDN10P78369 228 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms