RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 INSRP06213 1382 aa13.07□□□□□ -0.32
CHD3-208ENST00000470531 HMMRO75330 724 aa13.07□□□□□ -0.32
CHD3-208ENST00000470531 HAP1P54257 671 aaPredicted RBP13.07□□□□□ -0.32
CHD3-208ENST00000470531 PKP1Q13835 747 aa13.07□□□□□ -0.32
CHD3-208ENST00000470531 API5Q9BZZ5 524 aaKnown RBP13.07□□□□□ -0.32
CHD3-208ENST00000470531 NUTM1Q86Y26 1132 aa13.07□□□□□ -0.32
CHD3-208ENST00000470531 DHX37Q8IY37 1157 aaKnown RBP13.07□□□□□ -0.32
CHD3-208ENST00000470531 SCAF11Q99590 1463 aaKnown RBP13.07□□□□□ -0.32
CHD3-208ENST00000470531 MBIPQ9NS73 344 aa13.06□□□□□ -0.32
CHD3-208ENST00000470531 ANXA1P04083 346 aa13.06□□□□□ -0.32
CHD3-208ENST00000470531 MAPK8IP2Q13387 824 aaPredicted RBP13.06□□□□□ -0.32
CHD3-208ENST00000470531 KIAA2012Q0VF49 1180 aa13.05□□□□□ -0.32
CHD3-208ENST00000470531 PIK3C2GO75747 1445 aa13.05□□□□□ -0.32
CHD3-208ENST00000470531 SURF6O75683 361 aaKnown RBP13.05□□□□□ -0.32
CHD3-208ENST00000470531 SKOR2Q2VWA4 1001 aaPredicted RBP13.05□□□□□ -0.32
CHD3-208ENST00000470531 MEIS3Q99687 375 aa13.05□□□□□ -0.32
CHD3-208ENST00000470531 USHBP1Q8N6Y0 703 aa13.05□□□□□ -0.32
CHD3-208ENST00000470531 ZNF592Q92610 1267 aa13.05□□□□□ -0.32
CHD3-208ENST00000470531 REC8O95072 547 aa13.04□□□□□ -0.32
CHD3-208ENST00000470531 CEBPZQ03701 1054 aaKnown RBP13.04□□□□□ -0.32
CHD3-208ENST00000470531 FERMT3Q86UX7 667 aa13.04□□□□□ -0.32
CHD3-208ENST00000470531 ABCC10Q5T3U5 1492 aa13.04□□□□□ -0.32
CHD3-208ENST00000470531 TRIM35Q9UPQ4 493 aa13.04□□□□□ -0.32
CHD3-208ENST00000470531 FOXO3O43524 673 aa13.03□□□□□ -0.32
CHD3-208ENST00000470531 BAG4O95429 457 aaKnown RBP13.03□□□□□ -0.32
CHD3-208ENST00000470531 SHANK2Q9UPX8 1470 aa13.03□□□□□ -0.32
CHD3-208ENST00000470531 STK3Q13188 491 aa13.02□□□□□ -0.32
CHD3-208ENST00000470531 ZBTB40Q9NUA8 1239 aa13.02□□□□□ -0.32
CHD3-208ENST00000470531 ZHX1Q9UKY1 873 aaPredicted RBP13.02□□□□□ -0.32
CHD3-208ENST00000470531 NPHP1O15259 732 aa13.02□□□□□ -0.33
CHD3-208ENST00000470531 NFE2L2Q16236 605 aa13.02□□□□□ -0.33
CHD3-208ENST00000470531 NUCB1Q02818 461 aa13.02□□□□□ -0.33
CHD3-208ENST00000470531 GCC1Q96CN9 775 aa13.02□□□□□ -0.33
CHD3-208ENST00000470531 NUCB2P80303 420 aa13.01□□□□□ -0.33
CHD3-208ENST00000470531 LMOD3Q0VAK6 560 aa13.01□□□□□ -0.33
CHD3-208ENST00000470531 SIL1Q9H173 461 aa13.01□□□□□ -0.33
CHD3-208ENST00000470531 HSP90B1P14625 803 aaKnown RBP13.01□□□□□ -0.33
CHD3-208ENST00000470531 TCEANC2Q96MN5 208 aa13.01□□□□□ -0.33
CHD3-208ENST00000470531 ZNF692Q9BU19 519 aaPredicted RBP13.01□□□□□ -0.33
CHD3-208ENST00000470531 C14orf93Q9H972 538 aaKnown RBP13.01□□□□□ -0.33
CHD3-208ENST00000470531 MYO5CQ9NQX4 1742 aa13□□□□□ -0.33
CHD3-208ENST00000470531 SDSP20132 328 aa13□□□□□ -0.33
CHD3-208ENST00000470531 CWC27Q6UX04 472 aaKnown RBP13□□□□□ -0.33
CHD3-208ENST00000470531 PRIM1P49642 420 aaKnown RBP13□□□□□ -0.33
CHD3-208ENST00000470531 NLRP6P59044 892 aa13□□□□□ -0.33
CHD3-208ENST00000470531 HSP90AB2PQ58FF8 381 aa13□□□□□ -0.33
CHD3-208ENST00000470531 TSC1Q92574 1164 aa13□□□□□ -0.33
CHD3-208ENST00000470531 FCHSD2O94868 740 aa12.99□□□□□ -0.33
CHD3-208ENST00000470531 CPA1P15085 419 aa12.99□□□□□ -0.33
CHD3-208ENST00000470531 RABEP1Q15276 862 aa12.99□□□□□ -0.33
CHD3-208ENST00000470531 STK11IPQ8N1F8 1099 aa12.99□□□□□ -0.33
CHD3-208ENST00000470531 ZBTB9Q96C00 473 aa12.99□□□□□ -0.33
CHD3-208ENST00000470531 SPG7Q9UQ90 795 aa12.99□□□□□ -0.33
CHD3-208ENST00000470531 SAMD9LQ8IVG5 1584 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 FAM69CQ0P6D2 419 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 JARID2Q92833 1246 aaPredicted RBP12.98□□□□□ -0.33
CHD3-208ENST00000470531 DIAPH3Q9NSV4 1193 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 POLKQ9UBT6 870 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 NINLQ9Y2I6 1382 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 VAMP4O75379 141 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 CAMK4Q16566 473 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 C17orf53Q8N3J3 647 aaPredicted RBP12.98□□□□□ -0.33
CHD3-208ENST00000470531 C9orf78Q9NZ63 289 aaPredicted RBP12.98□□□□□ -0.33
CHD3-208ENST00000470531 UQCRHLA0A096LP55 91 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 UQCRHP07919 91 aa12.98□□□□□ -0.33
CHD3-208ENST00000470531 ZRSR1Q15695 479 aaKnown RBP12.98□□□□□ -0.33
CHD3-208ENST00000470531 UGGT1Q9NYU2 1555 aa12.97□□□□□ -0.33
CHD3-208ENST00000470531 ABCC2Q92887 1545 aa12.97□□□□□ -0.33
CHD3-208ENST00000470531 ERC2O15083 957 aa12.97□□□□□ -0.33
CHD3-208ENST00000470531 BMP2KLQ5H9B9 411 aa12.97□□□□□ -0.33
CHD3-208ENST00000470531 SMC5Q8IY18 1101 aa12.97□□□□□ -0.33
CHD3-208ENST00000470531 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
CHD3-208ENST00000470531 VIRMAQ69YN4 1812 aaKnown RBP12.97□□□□□ -0.33
CHD3-208ENST00000470531 UBTFL1P0CB47 393 aaPredicted RBP12.97□□□□□ -0.33
CHD3-208ENST00000470531 SMC3Q9UQE7 1217 aa12.97□□□□□ -0.33
CHD3-208ENST00000470531 IGSF3O75054 1194 aa12.96□□□□□ -0.33
CHD3-208ENST00000470531 HDAC1Q13547 482 aaPredicted RBP12.96□□□□□ -0.33
CHD3-208ENST00000470531 G2E3Q7L622 706 aa12.96□□□□□ -0.33
CHD3-208ENST00000470531 SYAP1Q96A49 352 aaPredicted RBP12.96□□□□□ -0.33
CHD3-208ENST00000470531 NUDT16Q96DE0 195 aaKnown RBP12.96□□□□□ -0.33
CHD3-208ENST00000470531 EIF2AK4Q9P2K8 1649 aaKnown RBP12.96□□□□□ -0.34
CHD3-208ENST00000470531 RTEL1-TNFRSF6BF6WH68 1400 aa12.96□□□□□ -0.34
CHD3-208ENST00000470531 CHAF1AQ13111 956 aaPredicted RBP12.96□□□□□ -0.34
CHD3-208ENST00000470531 ZSCAN23Q3MJ62 389 aa12.96□□□□□ -0.34
CHD3-208ENST00000470531 ZBTB7BO15156 539 aaPredicted RBP12.95□□□□□ -0.34
CHD3-208ENST00000470531 CCDC173Q0VFZ6 552 aa12.95□□□□□ -0.34
CHD3-208ENST00000470531 RAB3GAP1Q15042 981 aa12.95□□□□□ -0.34
CHD3-208ENST00000470531 ZSCAN30Q86W11 494 aa12.95□□□□□ -0.34
CHD3-208ENST00000470531 STAC3Q96MF2 364 aa12.95□□□□□ -0.34
CHD3-208ENST00000470531 NUP160Q12769 1436 aa12.95□□□□□ -0.34
CHD3-208ENST00000470531 A0A1W2PP64 1363 aa12.94□□□□□ -0.34
CHD3-208ENST00000470531 SRGAP3O43295 1099 aa12.94□□□□□ -0.34
CHD3-208ENST00000470531 TEFQ10587 303 aa12.94□□□□□ -0.34
CHD3-208ENST00000470531 LRRFIP2Q9Y608 721 aaKnown RBP12.94□□□□□ -0.34
CHD3-208ENST00000470531 MRPL50Q8N5N7 158 aaKnown RBP12.94□□□□□ -0.34
CHD3-208ENST00000470531 GNAI2P04899 355 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 HDGFL1Q5TGJ6 251 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 PLEKHM2Q8IWE5 1019 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 CLASP1Q7Z460 1538 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 VGLL3A8MV65 326 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms