RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 ZNF521Q96K83 1311 aa10.97□□□□□ -0.65
HPS4-206ENST00000439453 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.97□□□□□ -0.65
HPS4-206ENST00000439453 SPATA31A3Q5VYP0 1347 aa10.97□□□□□ -0.65
HPS4-206ENST00000439453 EVC2Q86UK5 1308 aa10.97□□□□□ -0.65
HPS4-206ENST00000439453 KIF20BQ96Q89 1820 aa10.97□□□□□ -0.65
HPS4-206ENST00000439453 BECN1Q14457 450 aa10.97□□□□□ -0.65
HPS4-206ENST00000439453 WDR43Q15061 677 aaKnown RBP eCLIP10.97□□□□□ -0.65
HPS4-206ENST00000439453 USP6P35125 1406 aa10.97□□□□□ -0.65
HPS4-206ENST00000439453 CCDC61Q9Y6R9 512 aa10.96□□□□□ -0.65
HPS4-206ENST00000439453 ACEP12821 1306 aa10.96□□□□□ -0.66
HPS4-206ENST00000439453 SLFN5Q08AF3 891 aa10.95□□□□□ -0.66
HPS4-206ENST00000439453 NWD2Q9ULI1 1742 aa10.95□□□□□ -0.66
HPS4-206ENST00000439453 COL18A1P39060 1754 aa10.95□□□□□ -0.66
HPS4-206ENST00000439453 SLIT3O75094 1523 aa10.95□□□□□ -0.66
HPS4-206ENST00000439453 KRT28Q7Z3Y7 464 aa10.95□□□□□ -0.66
HPS4-206ENST00000439453 ATAD2Q6PL18 1390 aa10.95□□□□□ -0.66
HPS4-206ENST00000439453 LMO7Q8WWI1 1683 aa10.94□□□□□ -0.66
HPS4-206ENST00000439453 SLKQ9H2G2 1235 aaPredicted RBP10.94□□□□□ -0.66
HPS4-206ENST00000439453 PPP2R1AP30153 589 aa10.94□□□□□ -0.66
HPS4-206ENST00000439453 SRPK2P78362 688 aaKnown RBP10.94□□□□□ -0.66
HPS4-206ENST00000439453 TMF1P82094 1093 aa10.94□□□□□ -0.66
HPS4-206ENST00000439453 LRRC59Q96AG4 307 aaKnown RBP10.94□□□□□ -0.66
HPS4-206ENST00000439453 SPATA31A6Q5VVP1 1343 aa10.94□□□□□ -0.66
HPS4-206ENST00000439453 SEC24BO95487 1268 aa10.94□□□□□ -0.66
HPS4-206ENST00000439453 IGHDP01880 384 aa10.94□□□□□ -0.66
HPS4-206ENST00000439453 PUS7Q96PZ0 661 aaKnown RBP10.94□□□□□ -0.66
HPS4-206ENST00000439453 RGS17Q9UGC6 210 aaPredicted RBP10.94□□□□□ -0.66
HPS4-206ENST00000439453 RGPD5Q99666 1765 aa10.93□□□□□ -0.66
HPS4-206ENST00000439453 CABP1Q9NZU7 370 aa10.93□□□□□ -0.66
HPS4-206ENST00000439453 ANKRD26Q9UPS8 1709 aa10.93□□□□□ -0.66
HPS4-206ENST00000439453 TRMT2AQ8IZ69 625 aaKnown RBP10.93□□□□□ -0.66
HPS4-206ENST00000439453 LTN1O94822 1766 aa10.93□□□□□ -0.66
HPS4-206ENST00000439453 A0A1W2PP64 1363 aa10.92□□□□□ -0.66
HPS4-206ENST00000439453 ANTXR1Q9H6X2 564 aa10.92□□□□□ -0.66
HPS4-206ENST00000439453 NFAT5O94916 1531 aa10.92□□□□□ -0.66
HPS4-206ENST00000439453 MAPK8IP3Q9UPT6 1336 aa10.92□□□□□ -0.66
HPS4-206ENST00000439453 COL14A1Q05707 1796 aaKnown RBP10.92□□□□□ -0.66
HPS4-206ENST00000439453 BCAR3O75815 825 aa10.91□□□□□ -0.66
HPS4-206ENST00000439453 GLIPR1L2Q4G1C9 344 aa10.91□□□□□ -0.66
HPS4-206ENST00000439453 KNSTRNQ9Y448 316 aa10.9□□□□□ -0.66
HPS4-206ENST00000439453 XRCC6P12956 609 aaKnown RBP eCLIP10.9□□□□□ -0.666e-6■■■■■ 31.4
HPS4-206ENST00000439453 SPINK5Q9NQ38 1064 aaPredicted RBP10.9□□□□□ -0.66
HPS4-206ENST00000439453 ARHGEF10O15013 1369 aa10.9□□□□□ -0.66
HPS4-206ENST00000439453 PKNOX2Q96KN3 472 aa10.9□□□□□ -0.67
HPS4-206ENST00000439453 SLC12A5Q9H2X9 1139 aa10.9□□□□□ -0.67
HPS4-206ENST00000439453 NINLQ9Y2I6 1382 aa10.9□□□□□ -0.67
HPS4-206ENST00000439453 CGNL1Q0VF96 1302 aa10.89□□□□□ -0.67
HPS4-206ENST00000439453 SLIT2O94813 1529 aa10.89□□□□□ -0.67
HPS4-206ENST00000439453 GOLGA6L3A6NEY3 463 aa10.89□□□□□ -0.67
HPS4-206ENST00000439453 PSME1Q06323 249 aa10.89□□□□□ -0.67
HPS4-206ENST00000439453 NAP1L5Q96NT1 182 aaPredicted RBP10.89□□□□□ -0.67
HPS4-206ENST00000439453 WNK3Q9BYP7 1800 aa10.89□□□□□ -0.67
HPS4-206ENST00000439453 CCDC146Q8IYE0 955 aa10.89□□□□□ -0.67
HPS4-206ENST00000439453 NGDNQ8NEJ9 315 aaKnown RBP10.89□□□□□ -0.67
HPS4-206ENST00000439453 ARXQ96QS3 562 aa10.89□□□□□ -0.67
HPS4-206ENST00000439453 PNNQ9H307 717 aaKnown RBP10.89□□□□□ -0.67
HPS4-206ENST00000439453 FSD2A1L4K1 749 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 ANKRD36BQ8N2N9 1353 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 OVOS2A0A0J9YW53 1432 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 AMER1Q5JTC6 1135 aaPredicted RBP10.88□□□□□ -0.67
HPS4-206ENST00000439453 OVOS2Q6IE36 1432 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 EDC4Q6P2E9 1401 aaKnown RBP10.88□□□□□ -0.67
HPS4-206ENST00000439453 CLUAP1Q96AJ1 413 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 EP400Q96L91 3159 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 CLCN1P35523 988 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 PDE3AQ14432 1141 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 BCL9LQ86UU0 1499 aa10.88□□□□□ -0.67
HPS4-206ENST00000439453 E9PSI1 815 aa10.87□□□□□ -0.67
HPS4-206ENST00000439453 CABLES1Q8TDN4 633 aa10.87□□□□□ -0.67
HPS4-206ENST00000439453 APAF1O14727 1248 aa10.87□□□□□ -0.67
HPS4-206ENST00000439453 TBC1D2Q9BYX2 928 aa10.87□□□□□ -0.67
HPS4-206ENST00000439453 UPF2Q9HAU5 1272 aaKnown RBP10.87□□□□□ -0.67
HPS4-206ENST00000439453 GLI3P10071 1580 aa10.87□□□□□ -0.67
HPS4-206ENST00000439453 TTC21BQ7Z4L5 1316 aa10.87□□□□□ -0.67
HPS4-206ENST00000439453 TBC1D32Q96NH3 1257 aa10.86□□□□□ -0.67
HPS4-206ENST00000439453 PEAK1Q9H792 1746 aa10.86□□□□□ -0.67
HPS4-206ENST00000439453 USP31Q70CQ4 1352 aa10.86□□□□□ -0.67
HPS4-206ENST00000439453 PANK2Q9BZ23 570 aa10.86□□□□□ -0.67
HPS4-206ENST00000439453 MCM4P33991 863 aa10.85□□□□□ -0.67
HPS4-206ENST00000439453 COG6Q9Y2V7 657 aa10.85□□□□□ -0.67
HPS4-206ENST00000439453 BRWD3Q6RI45 1802 aa10.85□□□□□ -0.67
HPS4-206ENST00000439453 NUTM2BA6NNL0 878 aaPredicted RBP10.85□□□□□ -0.67
HPS4-206ENST00000439453 NUTM2EB1AL46 878 aaPredicted RBP10.85□□□□□ -0.67
HPS4-206ENST00000439453 NUTM2AQ8IVF1 878 aaPredicted RBP10.85□□□□□ -0.67
HPS4-206ENST00000439453 PANK1Q8TE04 598 aa10.85□□□□□ -0.67
HPS4-206ENST00000439453 HSP90AA1P07900 732 aaKnown RBP10.85□□□□□ -0.67
HPS4-206ENST00000439453 GZF1Q9H116 711 aaPredicted RBP10.85□□□□□ -0.67
HPS4-206ENST00000439453 CANXP27824 592 aaKnown RBP10.84□□□□□ -0.67
HPS4-206ENST00000439453 CARD14Q9BXL6 1004 aa10.84□□□□□ -0.67
HPS4-206ENST00000439453 ZRANB1Q9UGI0 708 aa10.84□□□□□ -0.67
HPS4-206ENST00000439453 ATRNO75882 1429 aa10.84□□□□□ -0.67
HPS4-206ENST00000439453 RGPD2P0DJD1 1756 aa10.84□□□□□ -0.67
HPS4-206ENST00000439453 CAMTA1Q9Y6Y1 1673 aa10.84□□□□□ -0.67
HPS4-206ENST00000439453 HSP90AA2PQ14568 343 aaPredicted RBP10.84□□□□□ -0.67
HPS4-206ENST00000439453 ZNF692Q9BU19 519 aaPredicted RBP10.84□□□□□ -0.67
HPS4-206ENST00000439453 ABCC6O95255 1503 aa10.83□□□□□ -0.68
HPS4-206ENST00000439453 SLC24A1O60721 1099 aa10.83□□□□□ -0.68
HPS4-206ENST00000439453 VSIG10Q8N0Z9 540 aa10.83□□□□□ -0.68
HPS4-206ENST00000439453 FNBP4Q8N3X1 1017 aaPredicted RBP10.83□□□□□ -0.68
HPS4-206ENST00000439453 MAP2P11137 1827 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms