RNA–Protein interactions for RNA: ENST00000427516.2

VTI1BP4-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 4, humanhuman

BASIC

Gene VTI1BP4, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP4-201ENST00000427516 RNF20Q5VTR2 975 aa6.87□□□□□ -1.31
VTI1BP4-201ENST00000427516 DDX27Q96GQ7 796 aaKnown RBP6.87□□□□□ -1.31
VTI1BP4-201ENST00000427516 PRDM2Q13029 1718 aa6.87□□□□□ -1.31
VTI1BP4-201ENST00000427516 LAMC1P11047 1609 aa6.87□□□□□ -1.31
VTI1BP4-201ENST00000427516 CC2D2AQ9P2K1 1620 aa6.87□□□□□ -1.31
VTI1BP4-201ENST00000427516 SNAPC4Q5SXM2 1469 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 E9PSI1 815 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 PTGER2P43116 358 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 NOM1Q5C9Z4 860 aaKnown RBP6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 CC2D1BQ5T0F9 858 aaKnown RBP6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 RGS22Q8NE09 1264 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 PIBF1Q8WXW3 757 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 CWC22Q9HCG8 908 aaKnown RBP6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 BRMS1Q9HCU9 246 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 PRDM10Q9NQV6 1147 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 CWC15Q9P013 229 aaKnown RBP6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 ARHGEF11O15085 1522 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 ABCC2Q92887 1545 aa6.86□□□□□ -1.31
VTI1BP4-201ENST00000427516 CARMIL1Q5VZK9 1371 aa6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 NPC1L1Q9UHC9 1359 aa6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 HTATSF1O43719 755 aaKnown RBP6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 PSEN2P49810 448 aa6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 MMP14P50281 582 aa6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 TEX35Q5T0J7 233 aa6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 TNPO1Q92973 898 aaKnown RBP6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 SCAF11Q99590 1463 aaKnown RBP6.85□□□□□ -1.31
VTI1BP4-201ENST00000427516 DDIT3P35638 169 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 CBX1P83916 185 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 XPCQ01831 940 aaPredicted RBP6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 GPS2Q13227 327 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 CDCA8Q53HL2 280 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 DMRTA1Q5VZB9 504 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 KRT222Q8N1A0 295 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 MNS1Q8NEH6 495 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 EMILIN3Q9NT22 766 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 KDM5DQ9BY66 1539 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 BCORL1Q5H9F3 1711 aa6.84□□□□□ -1.31
VTI1BP4-201ENST00000427516 EIF2AK4Q9P2K8 1649 aaKnown RBP6.83□□□□□ -1.32
VTI1BP4-201ENST00000427516 PLIN1O60240 522 aa6.83□□□□□ -1.32
VTI1BP4-201ENST00000427516 KCNJ4P48050 445 aa6.83□□□□□ -1.32
VTI1BP4-201ENST00000427516 LRSAM1Q6UWE0 723 aa6.83□□□□□ -1.32
VTI1BP4-201ENST00000427516 POLR3GLQ9BT43 218 aa6.83□□□□□ -1.32
VTI1BP4-201ENST00000427516 ATAD2BQ9ULI0 1458 aa6.83□□□□□ -1.32
VTI1BP4-201ENST00000427516 SHROOM2Q13796 1616 aa6.83□□□□□ -1.32
VTI1BP4-201ENST00000427516 K7ELQ4 463 aaPredicted RBP6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 EVI5O60447 810 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 HMGB1P09429 215 aaKnown RBP6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 FOSBP53539 338 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 FKBP5Q13451 457 aaPredicted RBP6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 ZSCAN23Q3MJ62 389 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 DUSP27Q5VZP5 1158 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 ADGRD1Q6QNK2 874 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 ANKRD7Q92527 254 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 CARD11Q9BXL7 1154 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 SPTLC3Q9NUV7 552 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 PAXBP1Q9Y5B6 917 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 PTPRKQ15262 1439 aa6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 CFAP65Q6ZU64 1925 aaKnown RBP6.82□□□□□ -1.32
VTI1BP4-201ENST00000427516 TK2O00142 265 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 TULP2O00295 520 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 CT47B1P0C2W7 299 aaPredicted RBP6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 TXLNBQ8N3L3 684 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 ZNF454Q8N9F8 522 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 ZNF830Q96NB3 372 aaPredicted RBP6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 MYCBPQ99417 103 aaPredicted RBP6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 RBM28Q9NW13 759 aaKnown RBP6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 HDAC5Q9UQL6 1122 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 PIK3C2GO75747 1445 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 IGF1RP08069 1367 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 HMGXB3Q12766 1538 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 ADGBQ8N7X0 1667 aa6.81□□□□□ -1.32
VTI1BP4-201ENST00000427516 DENND4BO75064 1496 aaPredicted RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 CCDC141Q6ZP82 1450 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 DNMT1P26358 1616 aaKnown RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 CTIFO43310 598 aaKnown RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 HRO43593 1189 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 KIF1CO43896 1103 aaKnown RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 MAP3K9P80192 1104 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 SLFN5Q08AF3 891 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 DHX8Q14562 1220 aaKnown RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 NOLC1Q14978 699 aaKnown RBP eCLIP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 NBPF8Q3BBV2 869 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 RPAINQ86UA6 219 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 GAS2L3Q86XJ1 694 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 SLC26A8Q96RN1 970 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 TACO1Q9BSH4 297 aaKnown RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 RASSF4Q9H2L5 321 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 TSPY26PQ9H489 355 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 V9GYY5 206 aaPredicted RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 ZNF608Q9ULD9 1512 aaPredicted RBP6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 GPRASP1Q5JY77 1395 aa6.8□□□□□ -1.32
VTI1BP4-201ENST00000427516 COL17A1Q9UMD9 1497 aaPredicted RBP6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 RAD50Q92878 1312 aa6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 ZNF521Q96K83 1311 aa6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 SYNMO15061 1565 aa6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 KIF2AO00139 706 aaPredicted RBP6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 BAG4O95429 457 aaKnown RBP6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 MCCP23508 829 aa6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 TPM4P67936 248 aa6.79□□□□□ -1.32
VTI1BP4-201ENST00000427516 CAMK2BQ13554 666 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms