RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 C1orf141Q5JVX7 400 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 AXDND1Q5T1B0 1012 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 VPS37DQ86XT2 251 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 VSIG10Q8N0Z9 540 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 NLGN1Q8N2Q7 840 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 MCOLN1Q9GZU1 580 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 NMRK2Q9NPI5 230 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 SERTAD1Q9UHV2 236 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 ELMSAN1Q6PJG2 1045 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 SLC4A9Q96Q91 983 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 HECW2Q9P2P5 1572 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 FANCD2Q9BXW9 1451 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 GLRX3O76003 335 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 NDUFV2P19404 249 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 TRAPPC3LQ5T215 181 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 SPOUT1Q5T280 376 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 MICAL1Q8TDZ2 1067 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 MFSD14AQ96MC6 490 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 FXR2P51116 673 aaKnown RBP eCLIP3.61□□□□□ -1.832e-6■■■□□ 18.8
CCDC88A-205ENST00000426576 MAP3K11Q16584 847 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 RGL3Q3MIN7 710 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 KIF2CQ99661 725 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 TCEAL9Q9UHQ7 104 aa3.61□□□□□ -1.83
CCDC88A-205ENST00000426576 FKTNO75072 461 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 HSP90B1P14625 803 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 KCNA6P17658 529 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 CCDC85BQ15834 202 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 CCDC157Q569K6 752 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 ZSCAN29Q8IWY8 852 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 SLC10A4Q96EP9 437 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 RNF208Q9H0X6 261 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 SLC28A3Q9HAS3 691 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 SYNJ1O43426 1573 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 JARID2Q92833 1246 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 CSADQ9Y600 493 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 C6orf229H3BNL8 230 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 SRGAP2BP0DMP2 458 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 NLRP6P59044 892 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 CCDC152Q4G0S7 254 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 SPTA1P02549 2419 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 E9PSI1 815 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 CAPN9O14815 690 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 ALADP13716 330 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 RBM25P49756 843 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 DGLUCYQ7Z3D6 616 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 PAF1Q8N7H5 531 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 RDH13Q8NBN7 331 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 PRRX2Q99811 253 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 ARHGAP9Q9BRR9 750 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 ZMYND15Q9H091 742 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 CDV3Q9UKY7 258 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 ZNF652Q9Y2D9 606 aa3.6□□□□□ -1.83
CCDC88A-205ENST00000426576 NOLC1Q14978 699 aaKnown RBP eCLIP3.59□□□□□ -1.83
CCDC88A-205ENST00000426576 HVCN1Q96D96 273 aa3.59□□□□□ -1.83
CCDC88A-205ENST00000426576 TAOK3Q9H2K8 898 aa3.59□□□□□ -1.83
CCDC88A-205ENST00000426576 GMEB2Q9UKD1 530 aa3.59□□□□□ -1.83
CCDC88A-205ENST00000426576 TATP17735 454 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-205ENST00000426576 BRDTQ58F21 947 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-205ENST00000426576 TCP11L2Q8N4U5 519 aa3.59□□□□□ -1.83
CCDC88A-205ENST00000426576 ABCC8Q09428 1581 aa3.59□□□□□ -1.84
CCDC88A-205ENST00000426576 CSPG5O95196 566 aa3.59□□□□□ -1.84
CCDC88A-205ENST00000426576 FBXW10Q5XX13 1052 aa3.59□□□□□ -1.84
CCDC88A-205ENST00000426576 ZC3H14Q6PJT7 736 aaKnown RBP3.59□□□□□ -1.84
CCDC88A-205ENST00000426576 USP47Q96K76 1375 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 HAX1O00165 279 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 GNPATO15228 680 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 HTATSF1O43719 755 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 CHRNA2Q15822 529 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 SLC15A2Q16348 729 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 HS1BP3Q53T59 392 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 TMEM132EQ6IEE7 984 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 MPRIPQ6WCQ1 1025 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 C12orf50Q8NA57 414 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 COA7Q96BR5 231 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 GPHNQ9NQX3 736 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 SLC5A4Q9NY91 659 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 NESP48681 1621 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 DENND4BO75064 1496 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 ATAD2BQ9ULI0 1458 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 TMEM94Q12767 1356 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 TNIKQ9UKE5 1360 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 WASLO00401 505 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 FARP2O94887 1054 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 NONOQ15233 471 aaKnown RBP eCLIP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 PIK3R5Q8WYR1 880 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 CNKSR1Q969H4 720 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 UHRF1Q96T88 793 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 FYCO1Q9BQS8 1478 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 TNRQ92752 1358 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 LMNB1P20700 586 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 BIRC2Q13490 618 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 PPP2R5DQ14738 602 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 TXNRD1Q16881 649 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 WWC2Q6AWC2 1192 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 NECAB2Q7Z6G3 386 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 TCP11L1Q9NUJ3 509 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 CHIC2Q9UKJ5 165 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 ZNF462Q96JM2 2506 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 WRNQ14191 1432 aaPredicted RBP eCLIP3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 ATP10DQ9P241 1426 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms