RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 PYM1Q9BRP8 204 aaKnown RBP3.26□□□□□ -1.89
CHD9-202ENST00000398510 DIP2AQ14689 1571 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 ERLIN2O94905 339 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 NF2P35240 595 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 CCDC82Q8N4S0 544 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 CDK5RAP3Q96JB5 506 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 AK7Q96M32 723 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 MAP2P11137 1827 aaKnown RBP3.26□□□□□ -1.89
CHD9-202ENST00000398510 TTC21BQ7Z4L5 1316 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 UHRF1BP1Q6BDS2 1440 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 RIMS2Q9UQ26 1411 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 FANCIQ9NVI1 1328 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 GNAI1P63096 354 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 MTERF4Q7Z6M4 381 aaKnown RBP3.26□□□□□ -1.89
CHD9-202ENST00000398510 C16orf71Q8IYS4 520 aaPredicted RBP3.26□□□□□ -1.89
CHD9-202ENST00000398510 NUP160Q12769 1436 aa3.26□□□□□ -1.89
CHD9-202ENST00000398510 ZNF608Q9ULD9 1512 aaPredicted RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 MYH3P11055 1940 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 A0A087WZG4 1122 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 CETN2P41208 172 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 PKD2Q13563 968 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 HSP90AB3PQ58FF7 597 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 ZGPATQ8N5A5 531 aaKnown RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 MLECQ14165 292 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 SAMD9Q5K651 1589 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 WASF1Q92558 559 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 JPH4Q96JJ6 628 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 TDRD9Q8NDG6 1382 aaKnown RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 KIAA1210Q9ULL0 1709 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 MSH5O43196 834 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 PDE4CQ08493 712 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 TEX35Q5T0J7 233 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 DZIP1LQ8IYY4 767 aaKnown RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 PRXQ9BXM0 1461 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 FAM208AQ9UK61 1670 aaKnown RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 FRMPD1Q5SYB0 1578 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 GOLGA6L3A6NEY3 463 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 ARHGEF6Q15052 776 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 TEX13AQ9BXU3 409 aaPredicted RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 DACH1Q9UI36 760 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 MYH2Q9UKX2 1941 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 CD109Q6YHK3 1445 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 CCDC12Q8WUD4 166 aaPredicted RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 NOM1Q5C9Z4 860 aaKnown RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 ITPRIPQ8IWB1 547 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 UBE2Q2Q8WVN8 375 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 NGLY1Q96IV0 654 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 CCDC171Q6TFL3 1326 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 IQGAP3Q86VI3 1631 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 BMS1Q14692 1282 aaKnown RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 TRIM22Q8IYM9 498 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 TRIM6-TRIM34B2RNG4 842 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 U2AF1L5P0DN76 240 aaPredicted RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 USP5P45974 858 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 U2AF1Q01081 240 aaKnown RBP eCLIP3.25□□□□□ -1.89
CHD9-202ENST00000398510 RNF216Q9NWF9 866 aaPredicted RBP3.25□□□□□ -1.89
CHD9-202ENST00000398510 PNMA2Q9UL42 364 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 RUFY1Q96T51 708 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 RAB34Q9BZG1 259 aa3.25□□□□□ -1.89
CHD9-202ENST00000398510 FAM69CQ0P6D2 419 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 ERCC4Q92889 916 aaPredicted RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 ZNF330Q9Y3S2 320 aaPredicted RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 RBM19Q9Y4C8 960 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 KDM5BQ9UGL1 1544 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 AFDNP55196 1824 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 MYH1P12882 1939 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 AMOTQ4VCS5 1084 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 CCDC178Q5BJE1 867 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 VPS36Q86VN1 386 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 FAM114A2Q9NRY5 505 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 SYCP2Q9BX26 1530 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 NCOA1Q15788 1441 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 STARD3NLO95772 234 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 NOP2P46087 812 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 RRP12Q5JTH9 1297 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 CCDC146Q8IYE0 955 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 PREX1Q8TCU6 1659 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 LMO7Q8WWI1 1683 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 SREK1Q8WXA9 508 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 SMARCE1Q969G3 411 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 MYH9P35579 1960 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 ZFYVE9O95405 1425 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 CCDC196A0A1B0GTZ2 297 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 FAM184AQ8NB25 1140 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 BRD4O60885 1362 aaPredicted RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 SMC2O95347 1197 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 CCDC30Q5VVM6 783 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 SRCIN1Q9C0H9 1055 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 PHAXQ9H814 394 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 ARHGEF11O15085 1522 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 DHX29Q7Z478 1369 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 PABPN1LA6NDY0 278 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 GNAI3P08754 354 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 INCENPQ9NQS7 918 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 TMOD4Q9NZQ9 345 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 AKAP2Q9Y2D5 859 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 MYH7P12883 1935 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 TTC21AQ8NDW8 1320 aa3.24□□□□□ -1.89
CHD9-202ENST00000398510 SF3A1Q15459 793 aaKnown RBP3.24□□□□□ -1.89
CHD9-202ENST00000398510 TMEM87AQ8NBN3 555 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms