RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ARHGAP45Q92619 1136 aa15.91■□□□□ 0.14
SHMT1-205ENST00000395684 ALKQ9UM73 1620 aa15.91■□□□□ 0.14
SHMT1-205ENST00000395684 GCC1Q96CN9 775 aa15.91■□□□□ 0.14
SHMT1-205ENST00000395684 PREX1Q8TCU6 1659 aa15.91■□□□□ 0.14
SHMT1-205ENST00000395684 PIK3R4Q99570 1358 aa15.9■□□□□ 0.14
SHMT1-205ENST00000395684 EMILIN1Q9Y6C2 1016 aa15.9■□□□□ 0.14
SHMT1-205ENST00000395684 MBIPQ9NS73 344 aa15.9■□□□□ 0.14
SHMT1-205ENST00000395684 PTCH1Q13635 1447 aa15.89■□□□□ 0.13
SHMT1-205ENST00000395684 KIF20BQ96Q89 1820 aa15.89■□□□□ 0.13
SHMT1-205ENST00000395684 DDX11L8A8MPP1 907 aa15.89■□□□□ 0.13
SHMT1-205ENST00000395684 EIF5BO60841 1220 aaKnown RBP15.89■□□□□ 0.13
SHMT1-205ENST00000395684 CD2BP2O95400 341 aaKnown RBP15.89■□□□□ 0.13
SHMT1-205ENST00000395684 ZNF853P0CG23 659 aa15.89■□□□□ 0.13
SHMT1-205ENST00000395684 TNPO1Q92973 898 aaKnown RBP15.89■□□□□ 0.13
SHMT1-205ENST00000395684 IL13P35225 146 aa15.89■□□□□ 0.13
SHMT1-205ENST00000395684 IFT57Q9NWB7 429 aa15.89■□□□□ 0.13
SHMT1-205ENST00000395684 GNAI1P63096 354 aa15.88■□□□□ 0.13
SHMT1-205ENST00000395684 TBC1D9Q6ZT07 1266 aa15.88■□□□□ 0.13
SHMT1-205ENST00000395684 ABCC4O15439 1325 aa15.88■□□□□ 0.13
SHMT1-205ENST00000395684 RICTORQ6R327 1708 aa15.87■□□□□ 0.13
SHMT1-205ENST00000395684 HSP90AB1P08238 724 aaKnown RBP15.87■□□□□ 0.13
SHMT1-205ENST00000395684 CALD1Q05682 793 aaKnown RBP15.87■□□□□ 0.13
SHMT1-205ENST00000395684 C8orf58Q8NAV2 365 aa15.87■□□□□ 0.13
SHMT1-205ENST00000395684 CHMP4BQ9H444 224 aaKnown RBP15.87■□□□□ 0.13
SHMT1-205ENST00000395684 ZRANB1Q9UGI0 708 aa15.87■□□□□ 0.13
SHMT1-205ENST00000395684 STAG3Q9UJ98 1225 aa15.87■□□□□ 0.13
SHMT1-205ENST00000395684 TWISTNBQ3B726 338 aaPredicted RBP15.86■□□□□ 0.13
SHMT1-205ENST00000395684 RBM42Q9BTD8 480 aaKnown RBP15.86■□□□□ 0.13
SHMT1-205ENST00000395684 MRE11P49959 708 aa15.86■□□□□ 0.13
SHMT1-205ENST00000395684 CIZ1Q9ULV3 898 aaPredicted RBP15.86■□□□□ 0.13
SHMT1-205ENST00000395684 RAB3GAP1Q15042 981 aa15.85■□□□□ 0.13
SHMT1-205ENST00000395684 NME9Q86XW9 330 aa15.85■□□□□ 0.13
SHMT1-205ENST00000395684 ATP7BP35670 1465 aa15.85■□□□□ 0.13
SHMT1-205ENST00000395684 FOXD4L1Q9NU39 408 aa15.85■□□□□ 0.13
SHMT1-205ENST00000395684 MAP2P11137 1827 aaKnown RBP15.84■□□□□ 0.13
SHMT1-205ENST00000395684 FAM83GA6ND36 823 aa15.84■□□□□ 0.13
SHMT1-205ENST00000395684 CFAP44Q96MT7 982 aa15.84■□□□□ 0.13
SHMT1-205ENST00000395684 GRPEL1Q9HAV7 217 aa15.84■□□□□ 0.13
SHMT1-205ENST00000395684 K7ELQ4 463 aaPredicted RBP15.82■□□□□ 0.12
SHMT1-205ENST00000395684 GSPT1P15170 499 aaKnown RBP15.82■□□□□ 0.12
SHMT1-205ENST00000395684 DCTN1Q14203 1278 aa15.82■□□□□ 0.12
SHMT1-205ENST00000395684 CPSF1Q10570 1443 aaKnown RBP15.82■□□□□ 0.12
SHMT1-205ENST00000395684 RRS1Q15050 365 aaKnown RBP15.81■□□□□ 0.12
SHMT1-205ENST00000395684 GBP4Q96PP9 640 aa15.81■□□□□ 0.12
SHMT1-205ENST00000395684 HSP90AA1P07900 732 aaKnown RBP15.81■□□□□ 0.12
SHMT1-205ENST00000395684 GAS2L3Q86XJ1 694 aa15.81■□□□□ 0.12
SHMT1-205ENST00000395684 API5Q9BZZ5 524 aaKnown RBP15.81■□□□□ 0.12
SHMT1-205ENST00000395684 PLEKHM2Q8IWE5 1019 aa15.81■□□□□ 0.12
SHMT1-205ENST00000395684 NCKAP5LQ9HCH0 1330 aa15.81■□□□□ 0.12
SHMT1-205ENST00000395684 EDC4Q6P2E9 1401 aaKnown RBP15.8■□□□□ 0.12
SHMT1-205ENST00000395684 DLC1Q96QB1 1528 aa15.8■□□□□ 0.12
SHMT1-205ENST00000395684 WASLO00401 505 aaPredicted RBP15.8■□□□□ 0.12
SHMT1-205ENST00000395684 CDC45O75419 566 aa15.8■□□□□ 0.12
SHMT1-205ENST00000395684 GAS2L2Q8NHY3 880 aa15.8■□□□□ 0.12
SHMT1-205ENST00000395684 CDK12Q9NYV4 1490 aaPredicted RBP15.8■□□□□ 0.12
SHMT1-205ENST00000395684 AATKQ6ZMQ8 1374 aa15.8■□□□□ 0.12
SHMT1-205ENST00000395684 RIMS2Q9UQ26 1411 aa15.79■□□□□ 0.12
SHMT1-205ENST00000395684 LMOD3Q0VAK6 560 aa15.79■□□□□ 0.12
SHMT1-205ENST00000395684 DCTPP1Q9H773 170 aa15.79■□□□□ 0.12
SHMT1-205ENST00000395684 ISY1Q9ULR0 285 aaKnown RBP15.79■□□□□ 0.12
SHMT1-205ENST00000395684 CLCN1P35523 988 aa15.79■□□□□ 0.12
SHMT1-205ENST00000395684 C16orf71Q8IYS4 520 aaPredicted RBP15.78■□□□□ 0.12
SHMT1-205ENST00000395684 A2ML1A8K2U0 1454 aa15.78■□□□□ 0.12
SHMT1-205ENST00000395684 SSFA2P28290 1259 aa15.78■□□□□ 0.12
SHMT1-205ENST00000395684 DNAJC5Q9H3Z4 198 aa15.78■□□□□ 0.12
SHMT1-205ENST00000395684 COG3Q96JB2 828 aa15.77■□□□□ 0.12
SHMT1-205ENST00000395684 KNDC1Q76NI1 1749 aa15.77■□□□□ 0.11
SHMT1-205ENST00000395684 SKOR2Q2VWA4 1001 aaPredicted RBP15.77■□□□□ 0.11
SHMT1-205ENST00000395684 NUDT16Q96DE0 195 aaKnown RBP15.77■□□□□ 0.11
SHMT1-205ENST00000395684 KRT24Q2M2I5 525 aa15.76■□□□□ 0.11
SHMT1-205ENST00000395684 CPS1P31327 1500 aa15.76■□□□□ 0.11
SHMT1-205ENST00000395684 DLG5Q8TDM6 1919 aa15.76■□□□□ 0.11
SHMT1-205ENST00000395684 FAM69CQ0P6D2 419 aa15.76■□□□□ 0.11
SHMT1-205ENST00000395684 INTS3Q68E01 1043 aaKnown RBP15.76■□□□□ 0.11
SHMT1-205ENST00000395684 TXNDC2Q86VQ3 553 aa15.76■□□□□ 0.11
SHMT1-205ENST00000395684 KIF24Q5T7B8 1368 aa15.76■□□□□ 0.11
SHMT1-205ENST00000395684 TTC22Q5TAA0 569 aa15.75■□□□□ 0.11
SHMT1-205ENST00000395684 OTUD7AQ8TE49 926 aaPredicted RBP15.75■□□□□ 0.11
SHMT1-205ENST00000395684 AEBP1Q8IUX7 1158 aa15.75■□□□□ 0.11
SHMT1-205ENST00000395684 SETD1AO15047 1707 aaKnown RBP15.75■□□□□ 0.11
SHMT1-205ENST00000395684 METP08581 1390 aa15.75■□□□□ 0.11
SHMT1-205ENST00000395684 REREQ9P2R6 1566 aa15.74■□□□□ 0.11
SHMT1-205ENST00000395684 CLEC17AQ6ZS10 378 aa15.74■□□□□ 0.11
SHMT1-205ENST00000395684 ANKRD44Q8N8A2 993 aa15.74■□□□□ 0.11
SHMT1-205ENST00000395684 CCDC61Q9Y6R9 512 aa15.74■□□□□ 0.11
SHMT1-205ENST00000395684 USP26Q9BXU7 913 aa15.73■□□□□ 0.11
SHMT1-205ENST00000395684 RGS12O14924 1447 aa15.73■□□□□ 0.11
SHMT1-205ENST00000395684 ATP10DQ9P241 1426 aa15.73■□□□□ 0.11
SHMT1-205ENST00000395684 ERBB4Q15303 1308 aa15.73■□□□□ 0.11
SHMT1-205ENST00000395684 PTMSP20962 102 aa15.73■□□□□ 0.11
SHMT1-205ENST00000395684 RABEP1Q15276 862 aa15.72■□□□□ 0.11
SHMT1-205ENST00000395684 BAG4O95429 457 aaKnown RBP15.72■□□□□ 0.11
SHMT1-205ENST00000395684 SULT6B1Q6IMI4 303 aa15.72■□□□□ 0.11
SHMT1-205ENST00000395684 CEP85Q6P2H3 762 aa15.72■□□□□ 0.11
SHMT1-205ENST00000395684 ESPNB1AK53 854 aa15.71■□□□□ 0.11
SHMT1-205ENST00000395684 CHL1O00533 1208 aa15.71■□□□□ 0.11
SHMT1-205ENST00000395684 SMARCA5O60264 1052 aaPredicted RBP15.71■□□□□ 0.11
SHMT1-205ENST00000395684 EIF4A2Q14240 407 aaKnown RBP15.71■□□□□ 0.11
SHMT1-205ENST00000395684 MCM10Q7L590 875 aa15.71■□□□□ 0.11
SHMT1-205ENST00000395684 RPAP2Q8IXW5 612 aaPredicted RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms