RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 ABTB2Q8N961 1025 aa24.55■■□□□ 1.52
CCDC50-202ENST00000392456 PIK3C2AO00443 1686 aa24.54■■□□□ 1.52
CCDC50-202ENST00000392456 NEUROD2Q15784 382 aa24.54■■□□□ 1.52
CCDC50-202ENST00000392456 RUNDC1Q96C34 613 aa24.54■■□□□ 1.52
CCDC50-202ENST00000392456 TCP11L2Q8N4U5 519 aa24.54■■□□□ 1.52
CCDC50-202ENST00000392456 C1orf167Q5SNV9 1468 aa24.54■■□□□ 1.52
CCDC50-202ENST00000392456 USP31Q70CQ4 1352 aa24.53■■□□□ 1.52
CCDC50-202ENST00000392456 ATF3P18847 181 aa24.53■■□□□ 1.52
CCDC50-202ENST00000392456 DMRT2Q9Y5R5 561 aa24.53■■□□□ 1.52
CCDC50-202ENST00000392456 FRAT1Q92837 279 aaPredicted RBP24.52■■□□□ 1.52
CCDC50-202ENST00000392456 IL13P35225 146 aa24.51■■□□□ 1.51
CCDC50-202ENST00000392456 DDX17Q92841 729 aaKnown RBP24.51■■□□□ 1.51
CCDC50-202ENST00000392456 PLEKHF1Q96S99 279 aa24.51■■□□□ 1.51
CCDC50-202ENST00000392456 SPINK5Q9NQ38 1064 aaPredicted RBP24.51■■□□□ 1.51
CCDC50-202ENST00000392456 PDE3BQ13370 1112 aa24.5■■□□□ 1.51
CCDC50-202ENST00000392456 HSP90AB2PQ58FF8 381 aa24.49■■□□□ 1.51
CCDC50-202ENST00000392456 MST1RQ04912 1400 aa24.49■■□□□ 1.51
CCDC50-202ENST00000392456 MAP3K19Q56UN5 1328 aa24.49■■□□□ 1.51
CCDC50-202ENST00000392456 CDK12Q9NYV4 1490 aaPredicted RBP24.48■■□□□ 1.51
CCDC50-202ENST00000392456 HMOX1P09601 288 aa24.48■■□□□ 1.51
CCDC50-202ENST00000392456 LRRC7Q96NW7 1537 aa24.46■■□□□ 1.51
CCDC50-202ENST00000392456 NCOA3Q9Y6Q9 1424 aa24.46■■□□□ 1.51
CCDC50-202ENST00000392456 XIRP1Q702N8 1843 aaKnown RBP24.46■■□□□ 1.51
CCDC50-202ENST00000392456 IQSEC2Q5JU85 1478 aa24.46■■□□□ 1.51
CCDC50-202ENST00000392456 HSP90AA1P07900 732 aaKnown RBP24.45■■□□□ 1.51
CCDC50-202ENST00000392456 WWC1Q8IX03 1113 aa24.45■■□□□ 1.51
CCDC50-202ENST00000392456 PEAK1Q9H792 1746 aa24.45■■□□□ 1.51
CCDC50-202ENST00000392456 MARF1Q9Y4F3 1742 aaKnown RBP24.45■■□□□ 1.5
CCDC50-202ENST00000392456 GOLGA2Q08379 1002 aa24.44■■□□□ 1.5
CCDC50-202ENST00000392456 EIF4A2Q14240 407 aaKnown RBP24.44■■□□□ 1.5
CCDC50-202ENST00000392456 CADPS2Q86UW7 1296 aa24.44■■□□□ 1.5
CCDC50-202ENST00000392456 MSH6P52701 1360 aa24.43■■□□□ 1.5
CCDC50-202ENST00000392456 KRT28Q7Z3Y7 464 aa24.43■■□□□ 1.5
CCDC50-202ENST00000392456 DUSP27Q5VZP5 1158 aa24.42■■□□□ 1.5
CCDC50-202ENST00000392456 DCCP43146 1447 aa24.42■■□□□ 1.5
CCDC50-202ENST00000392456 PRKAR2BP31323 418 aa24.42■■□□□ 1.5
CCDC50-202ENST00000392456 LMOD2Q6P5Q4 547 aa24.42■■□□□ 1.5
CCDC50-202ENST00000392456 SLFN5Q08AF3 891 aa24.41■■□□□ 1.5
CCDC50-202ENST00000392456 PHACTR3Q96KR7 559 aa24.41■■□□□ 1.5
CCDC50-202ENST00000392456 PHF23Q9BUL5 403 aaPredicted RBP24.41■■□□□ 1.5
CCDC50-202ENST00000392456 RRAGDQ9NQL2 400 aaPredicted RBP24.41■■□□□ 1.5
CCDC50-202ENST00000392456 FCHSD2O94868 740 aa24.41■■□□□ 1.5
CCDC50-202ENST00000392456 PRDM4Q9UKN5 801 aa24.4■■□□□ 1.5
CCDC50-202ENST00000392456 TMPOP42166 694 aaKnown RBP24.39■■□□□ 1.49
CCDC50-202ENST00000392456 AEBP1Q8IUX7 1158 aa24.39■■□□□ 1.49
CCDC50-202ENST00000392456 AMPHP49418 695 aa24.38■■□□□ 1.49
CCDC50-202ENST00000392456 TRMT2AQ8IZ69 625 aaKnown RBP24.37■■□□□ 1.49
CCDC50-202ENST00000392456 MAPK8IP3Q9UPT6 1336 aa24.36■■□□□ 1.49
CCDC50-202ENST00000392456 SBNO1A3KN83 1393 aa24.36■■□□□ 1.49
CCDC50-202ENST00000392456 RCAN3Q9UKA8 241 aa24.36■■□□□ 1.49
CCDC50-202ENST00000392456 NGEFQ8N5V2 710 aa24.36■■□□□ 1.49
CCDC50-202ENST00000392456 TRIM35Q9UPQ4 493 aa24.36■■□□□ 1.49
CCDC50-202ENST00000392456 FLT4P35916 1363 aa24.35■■□□□ 1.49
CCDC50-202ENST00000392456 SULT6B1Q6IMI4 303 aa24.34■■□□□ 1.49
CCDC50-202ENST00000392456 BRINP3Q76B58 766 aa24.34■■□□□ 1.49
CCDC50-202ENST00000392456 HOXC9P31274 260 aa24.34■■□□□ 1.49
CCDC50-202ENST00000392456 RNF123Q5XPI4 1314 aa24.33■■□□□ 1.49
CCDC50-202ENST00000392456 RIPK4P57078 832 aa24.33■■□□□ 1.49
CCDC50-202ENST00000392456 NFKBIBQ15653 356 aa24.33■■□□□ 1.49
CCDC50-202ENST00000392456 CCDC27Q2M243 656 aa24.33■■□□□ 1.49
CCDC50-202ENST00000392456 USP54Q70EL1 1684 aa24.33■■□□□ 1.49
CCDC50-202ENST00000392456 SLAIN2Q9P270 581 aa24.33■■□□□ 1.48
CCDC50-202ENST00000392456 TRPM3Q9HCF6 1732 aaPredicted RBP24.32■■□□□ 1.48
CCDC50-202ENST00000392456 GCP02774 474 aa24.32■■□□□ 1.48
CCDC50-202ENST00000392456 CALD1Q05682 793 aaKnown RBP24.32■■□□□ 1.48
CCDC50-202ENST00000392456 KIF1AQ12756 1690 aa24.32■■□□□ 1.48
CCDC50-202ENST00000392456 ZBTB7CA1YPR0 619 aa24.32■■□□□ 1.48
CCDC50-202ENST00000392456 NAP1L5Q96NT1 182 aaPredicted RBP24.32■■□□□ 1.48
CCDC50-202ENST00000392456 E9PSI1 815 aa24.31■■□□□ 1.48
CCDC50-202ENST00000392456 AEBP2Q6ZN18 517 aaPredicted RBP24.3■■□□□ 1.48
CCDC50-202ENST00000392456 LTV1Q96GA3 475 aaPredicted RBP24.3■■□□□ 1.48
CCDC50-202ENST00000392456 PNNQ9H307 717 aaKnown RBP24.3■■□□□ 1.48
CCDC50-202ENST00000392456 NFAT5O94916 1531 aa24.3■■□□□ 1.48
CCDC50-202ENST00000392456 TAF7LQ5H9L4 462 aa24.29■■□□□ 1.48
CCDC50-202ENST00000392456 EYA1Q99502 592 aa24.29■■□□□ 1.48
CCDC50-202ENST00000392456 NPHP3Q7Z494 1330 aa24.28■■□□□ 1.48
CCDC50-202ENST00000392456 WDR63Q8IWG1 891 aa24.28■■□□□ 1.48
CCDC50-202ENST00000392456 NPM2Q86SE8 214 aaKnown RBP24.27■■□□□ 1.48
CCDC50-202ENST00000392456 KCNH5Q8NCM2 988 aa24.26■■□□□ 1.47
CCDC50-202ENST00000392456 CABLES1Q8TDN4 633 aa24.26■■□□□ 1.47
CCDC50-202ENST00000392456 USP19O94966 1318 aa24.26■■□□□ 1.47
CCDC50-202ENST00000392456 NCBP3Q53F19 620 aaKnown RBP24.26■■□□□ 1.47
CCDC50-202ENST00000392456 NFE2L2Q16236 605 aa24.25■■□□□ 1.47
CCDC50-202ENST00000392456 THUMPD2Q9BTF0 503 aaKnown RBP24.25■■□□□ 1.47
CCDC50-202ENST00000392456 PLIN1O60240 522 aa24.25■■□□□ 1.47
CCDC50-202ENST00000392456 IP6K1Q92551 441 aa24.25■■□□□ 1.47
CCDC50-202ENST00000392456 ARHGEF25Q86VW2 580 aa24.24■■□□□ 1.47
CCDC50-202ENST00000392456 RGPD1P0DJD0 1748 aa24.24■■□□□ 1.47
CCDC50-202ENST00000392456 PXDNQ92626 1479 aa24.24■■□□□ 1.47
CCDC50-202ENST00000392456 RRP1P56182 461 aaKnown RBP24.23■■□□□ 1.47
CCDC50-202ENST00000392456 LTN1O94822 1766 aa24.23■■□□□ 1.47
CCDC50-202ENST00000392456 ZC3H6P61129 1189 aaKnown RBP24.23■■□□□ 1.47
CCDC50-202ENST00000392456 ALS2Q96Q42 1657 aa24.23■■□□□ 1.47
CCDC50-202ENST00000392456 TSR2Q969E8 191 aaKnown RBP24.22■■□□□ 1.47
CCDC50-202ENST00000392456 IGSF1Q8N6C5 1336 aa24.22■■□□□ 1.47
CCDC50-202ENST00000392456 KIF24Q5T7B8 1368 aa24.22■■□□□ 1.47
CCDC50-202ENST00000392456 SLIT3O75094 1523 aa24.22■■□□□ 1.47
CCDC50-202ENST00000392456 MED1Q15648 1581 aaPredicted RBP24.22■■□□□ 1.47
CCDC50-202ENST00000392456 FAM83GA6ND36 823 aa24.21■■□□□ 1.47
CCDC50-202ENST00000392456 USHBP1Q8N6Y0 703 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms