RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TPM2P07951 284 aa11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 ZNF76P36508 570 aa11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 BRMS1Q9HCU9 246 aa11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 RUFY2Q8WXA3 655 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 CABP5Q9NP86 173 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 SPINK5Q9NQ38 1064 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 H3BQV1 296 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 IFFO2Q5TF58 517 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 HDGFL1Q5TGJ6 251 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 ABCF2Q9UG63 623 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 RRS1Q15050 365 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 AMOTQ4VCS5 1084 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 KRT27Q7Z3Y8 459 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 KIF16BQ96L93 1317 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 NCOA2Q15596 1464 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 NUTM1Q86Y26 1132 aa11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 DNAJC2Q99543 621 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-202ENST00000381753 WDR7Q9Y4E6 1490 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 LPXNO60711 386 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 NACAP1Q9BZK3 213 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 OTUD7BQ6GQQ9 843 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 IFNL2Q8IZJ0 200 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 FLAD1Q8NFF5 587 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 GPTP24298 496 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 ANKRD24Q8TF21 1146 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 EYA3Q99504 573 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 NOD1Q9Y239 953 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 UHRF1BP1LA0JNW5 1464 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 C9orf84Q5VXU9 1444 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 IL2RBP14784 551 aa11.18□□□□□ -0.62
LIMCH1-202ENST00000381753 MFAP1P55081 439 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 PPP4R3AQ6IN85 833 aa11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 TNNI2P48788 182 aa11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 E9PSI1 815 aa11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 TPM4P67936 248 aa11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 NAIPQ13075 1403 aa11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 LARGE2Q8N3Y3 721 aa11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 LRRFIP2Q9Y608 721 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-202ENST00000381753 TROQ12816 1431 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 ODF2Q5BJF6 829 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 CNTLNQ9NXG0 1405 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 ZNF608Q9ULD9 1512 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 TNIP1Q15025 636 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 TRIM37O94972 964 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 IFIT1P09914 478 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 XBP1P17861 261 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 HSCBQ8IWL3 235 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 CDC5LQ99459 802 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 API5Q9BZZ5 524 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 ZNF287Q9HBT7 754 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 NYXQ9GZU5 481 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 NOP2P46087 812 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 FAM196AQ6ZSG2 479 aa11.16□□□□□ -0.62
LIMCH1-202ENST00000381753 PSDA5PKW4 1024 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 H7C1D1 291 aa11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 ERC2O15083 957 aa11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 IDI1Q13907 227 aa11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 GPBP1L1Q9HC44 474 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 TIMELESSQ9UNS1 1208 aa11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 ZC3H12CQ9C0D7 883 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 CUX1P39880 1505 aa11.15□□□□□ -0.62
LIMCH1-202ENST00000381753 F8W031 263 aaPredicted RBP11.15□□□□□ -0.63
LIMCH1-202ENST00000381753 SAFBQ15424 915 aaKnown RBP eCLIP11.15□□□□□ -0.63
LIMCH1-202ENST00000381753 METTL24Q5JXM2 366 aa11.15□□□□□ -0.63
LIMCH1-202ENST00000381753 SOGA3Q5TF21 947 aa11.15□□□□□ -0.63
LIMCH1-202ENST00000381753 DRC7Q8IY82 874 aa11.15□□□□□ -0.63
LIMCH1-202ENST00000381753 DNAI2Q9GZS0 605 aa11.15□□□□□ -0.63
LIMCH1-202ENST00000381753 PLS1Q14651 629 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 NIM1KQ8IY84 436 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 NLRP3Q96P20 1036 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 ERICH6BQ5W0A0 696 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 PRKG1Q13976 671 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 MCTP1Q6DN14 999 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 TPTE2Q6XPS3 522 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 SPON1Q9HCB6 807 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 KRT18P05783 430 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 HLA-DOAP06340 250 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 CT47A1Q5JQC4 288 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 RBM17Q96I25 401 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 CDK5RAP3Q96JB5 506 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 FMNL2Q96PY5 1086 aa11.14□□□□□ -0.63
LIMCH1-202ENST00000381753 TCP11L2Q8N4U5 519 aa11.13□□□□□ -0.63
LIMCH1-202ENST00000381753 PDE6BP35913 854 aa11.13□□□□□ -0.63
LIMCH1-202ENST00000381753 KCNA6P17658 529 aa11.13□□□□□ -0.63
LIMCH1-202ENST00000381753 CEP126Q9P2H0 1117 aa11.13□□□□□ -0.63
LIMCH1-202ENST00000381753 ARHGEF11O15085 1522 aa11.13□□□□□ -0.63
LIMCH1-202ENST00000381753 RIMBP2O15034 1052 aa11.13□□□□□ -0.63
LIMCH1-202ENST00000381753 DNTTIP2Q5QJE6 756 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 ATAD2Q6PL18 1390 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 WDR62O43379 1518 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 ZKSCAN1P17029 563 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 PRKAR2BP31323 418 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 ZSCAN25Q6NSZ9 544 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 DCPSQ96C86 337 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 IVNS1ABPQ9Y6Y0 642 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 GNAT3A8MTJ3 354 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 KDM4AO75164 1064 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 FBXO41Q8TF61 875 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 ANKRD30BQ9BXX2 1392 aa11.12□□□□□ -0.63
LIMCH1-202ENST00000381753 CCDC96Q2M329 555 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 623.7 ms