RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CPLX2Q6PUV4 134 aaKnown RBP10.36□□□□□ -0.75
HMGB1-203ENST00000341423 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.36□□□□□ -0.759e-13■■■■■ 192.3
HMGB1-203ENST00000341423 TRIM21P19474 475 aaKnown RBP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 CNKSR1Q969H4 720 aa10.35□□□□□ -0.75
HMGB1-203ENST00000341423 CCDC57Q2TAC2 916 aa10.35□□□□□ -0.75
HMGB1-203ENST00000341423 NBPF3Q9H094 633 aa10.35□□□□□ -0.75
HMGB1-203ENST00000341423 MTIF3Q9H2K0 278 aaKnown RBP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 HNRNPUQ00839 825 aaKnown RBP eCLIP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 NUTM1Q86Y26 1132 aa10.35□□□□□ -0.75
HMGB1-203ENST00000341423 SMCR8Q8TEV9 937 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 ANP32BQ92688 251 aaKnown RBP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 CDC5LQ99459 802 aaKnown RBP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 HOXD10P28358 340 aa10.35□□□□□ -0.75
HMGB1-203ENST00000341423 EN1Q05925 392 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 FKBP5Q13451 457 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-203ENST00000341423 MTMR7Q9Y216 660 aa10.35□□□□□ -0.75
HMGB1-203ENST00000341423 UTP14AQ9BVJ6 771 aaKnown RBP10.34□□□□□ -0.75
HMGB1-203ENST00000341423 GPHNQ9NQX3 736 aaPredicted RBP10.34□□□□□ -0.75
HMGB1-203ENST00000341423 CABP1Q9NZU7 370 aa10.34□□□□□ -0.75
HMGB1-203ENST00000341423 RNF181Q9P0P0 153 aa10.34□□□□□ -0.75
HMGB1-203ENST00000341423 CSADQ9Y600 493 aa10.34□□□□□ -0.75
HMGB1-203ENST00000341423 CNBD1Q8NA66 436 aa10.34□□□□□ -0.75
HMGB1-203ENST00000341423 PDE3AQ14432 1141 aa10.34□□□□□ -0.75
HMGB1-203ENST00000341423 CCDC174Q6PII3 467 aa10.34□□□□□ -0.75
HMGB1-203ENST00000341423 PPP1R12BO60237 982 aaPredicted RBP10.34□□□□□ -0.75
HMGB1-203ENST00000341423 RTL5Q5HYW3 569 aaPredicted RBP10.34□□□□□ -0.75
HMGB1-203ENST00000341423 STK25O00506 426 aa10.33□□□□□ -0.76
HMGB1-203ENST00000341423 TRMT112Q9UI30 125 aaKnown RBP10.33□□□□□ -0.76
HMGB1-203ENST00000341423 GGNBP2Q9H3C7 697 aa10.33□□□□□ -0.76
HMGB1-203ENST00000341423 TROQ12816 1431 aaPredicted RBP10.33□□□□□ -0.76
HMGB1-203ENST00000341423 ACEP12821 1306 aa10.33□□□□□ -0.76
HMGB1-203ENST00000341423 KDM6BO15054 1643 aa10.33□□□□□ -0.76
HMGB1-203ENST00000341423 NAIPQ13075 1403 aa10.33□□□□□ -0.76
HMGB1-203ENST00000341423 NBPF1Q3BBV0 1214 aa10.33□□□□□ -0.76
HMGB1-203ENST00000341423 ZNF287Q9HBT7 754 aa10.33□□□□□ -0.76
HMGB1-203ENST00000341423 TRAPPC8Q9Y2L5 1435 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 TMEM94Q12767 1356 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 KAT6BQ8WYB5 2073 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 CFAP70Q5T0N1 1121 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 CHMP4CQ96CF2 233 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 RBM17Q96I25 401 aaKnown RBP10.32□□□□□ -0.76
HMGB1-203ENST00000341423 DNAI2Q9GZS0 605 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 PICK1Q9NRD5 415 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 NR2E3Q9Y5X4 410 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 ALDH1B1P30837 517 aa10.32□□□□□ -0.76
HMGB1-203ENST00000341423 ZNF644Q9H582 1327 aaPredicted RBP10.31□□□□□ -0.76
HMGB1-203ENST00000341423 C9orf84Q5VXU9 1444 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 LDHCP07864 332 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 ARMC9Q7Z3E5 817 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 KTN1Q86UP2 1357 aaKnown RBP10.31□□□□□ -0.76
HMGB1-203ENST00000341423 CCDC7Q96M83 1385 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 CCDC129Q6ZRS4 1044 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 WAPLQ7Z5K2 1190 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 ANKRD50Q9ULJ7 1429 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 MYCP01106 439 aaPredicted RBP10.31□□□□□ -0.76
HMGB1-203ENST00000341423 ANKRD24Q8TF21 1146 aa10.31□□□□□ -0.76
HMGB1-203ENST00000341423 DZIP1Q86YF9 867 aaKnown RBP10.3□□□□□ -0.76
HMGB1-203ENST00000341423 HLA-DOAP06340 250 aa10.3□□□□□ -0.76
HMGB1-203ENST00000341423 VSIG10Q8N0Z9 540 aa10.3□□□□□ -0.76
HMGB1-203ENST00000341423 TOP2BQ02880 1626 aa10.3□□□□□ -0.76
HMGB1-203ENST00000341423 GOLGA6L4A6NEF3 574 aa10.3□□□□□ -0.76
HMGB1-203ENST00000341423 ELL2O00472 640 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-203ENST00000341423 MYL6BP14649 208 aa10.3□□□□□ -0.76
HMGB1-203ENST00000341423 PABPC4Q13310 644 aaKnown RBP eCLIP10.3□□□□□ -0.764e-8■■□□□ 13.7
HMGB1-203ENST00000341423 TNIP1Q15025 636 aa10.3□□□□□ -0.76
HMGB1-203ENST00000341423 AMER1Q5JTC6 1135 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-203ENST00000341423 IFIT1P09914 478 aaKnown RBP10.29□□□□□ -0.76
HMGB1-203ENST00000341423 PIM2Q9P1W9 311 aa10.29□□□□□ -0.76
HMGB1-203ENST00000341423 ATP10AO60312 1499 aa10.29□□□□□ -0.76
HMGB1-203ENST00000341423 RAI14Q9P0K7 980 aa10.29□□□□□ -0.76
HMGB1-203ENST00000341423 PDZRN3Q9UPQ7 1066 aa10.29□□□□□ -0.76
HMGB1-203ENST00000341423 KIAA2012Q0VF49 1180 aa10.29□□□□□ -0.76
HMGB1-203ENST00000341423 CSPP1Q1MSJ5 1256 aa10.29□□□□□ -0.76
HMGB1-203ENST00000341423 FMNL2Q96PY5 1086 aa10.29□□□□□ -0.76
HMGB1-203ENST00000341423 WASLO00401 505 aaPredicted RBP10.28□□□□□ -0.76
HMGB1-203ENST00000341423 ERFEQ4G0M1 354 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 PPIP5K2O43314 1243 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 C2CD5Q86YS7 1000 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 IFIT2P09913 472 aaKnown RBP10.28□□□□□ -0.76
HMGB1-203ENST00000341423 NBPF11Q86T75 865 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 TMOD4Q9NZQ9 345 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 BTBD11A6QL63 1104 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 FMNL1O95466 1100 aaPredicted RBP10.28□□□□□ -0.76
HMGB1-203ENST00000341423 TPRNQ4KMQ1 711 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 PPP4R3AQ6IN85 833 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 DPF3Q92784 378 aa10.28□□□□□ -0.76
HMGB1-203ENST00000341423 HMOX1P09601 288 aa10.27□□□□□ -0.76
HMGB1-203ENST00000341423 PRKG1Q13976 671 aa10.27□□□□□ -0.76
HMGB1-203ENST00000341423 NBPF15Q8N660 670 aa10.27□□□□□ -0.76
HMGB1-203ENST00000341423 ZNF518AQ6AHZ1 1483 aa10.27□□□□□ -0.76
HMGB1-203ENST00000341423 CCDC158Q5M9N0 1113 aa10.27□□□□□ -0.77
HMGB1-203ENST00000341423 GJD4Q96KN9 370 aaPredicted RBP10.27□□□□□ -0.77
HMGB1-203ENST00000341423 TNFAIP1Q13829 316 aa10.27□□□□□ -0.77
HMGB1-203ENST00000341423 EIF4E1BA6NMX2 242 aaKnown RBP10.27□□□□□ -0.77
HMGB1-203ENST00000341423 CNGA1P29973 690 aa10.27□□□□□ -0.77
HMGB1-203ENST00000341423 NSFL1CQ9UNZ2 370 aaKnown RBP10.27□□□□□ -0.77
HMGB1-203ENST00000341423 KIF3AQ9Y496 699 aa10.27□□□□□ -0.77
HMGB1-203ENST00000341423 WIZO95785 1651 aa10.26□□□□□ -0.77
HMGB1-203ENST00000341423 HSP90AB4PQ58FF6 505 aa10.26□□□□□ -0.77
HMGB1-203ENST00000341423 NPHP4O75161 1426 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms