RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 ORAI2Q96SN7 254 aa23.26■■□□□ 1.31
RAB39A-201ENST00000320578 PAK3O75914 559 aaPredicted RBP23.26■■□□□ 1.31
RAB39A-201ENST00000320578 CADPS2Q86UW7 1296 aa23.26■■□□□ 1.31
RAB39A-201ENST00000320578 RTL1A6NKG5 1358 aa23.26■■□□□ 1.31
RAB39A-201ENST00000320578 HSP90AB2PQ58FF8 381 aa23.25■■□□□ 1.31
RAB39A-201ENST00000320578 ARHGEF10O15013 1369 aa23.24■■□□□ 1.31
RAB39A-201ENST00000320578 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.24■■□□□ 1.31
RAB39A-201ENST00000320578 RGPD1P0DJD0 1748 aa23.24■■□□□ 1.31
RAB39A-201ENST00000320578 HMOX1P09601 288 aa23.24■■□□□ 1.31
RAB39A-201ENST00000320578 CT47B1P0C2W7 299 aaPredicted RBP23.24■■□□□ 1.31
RAB39A-201ENST00000320578 KCNH5Q8NCM2 988 aa23.24■■□□□ 1.31
RAB39A-201ENST00000320578 AMPHP49418 695 aa23.23■■□□□ 1.31
RAB39A-201ENST00000320578 MSH6P52701 1360 aa23.22■■□□□ 1.31
RAB39A-201ENST00000320578 CALD1Q05682 793 aaKnown RBP23.22■■□□□ 1.31
RAB39A-201ENST00000320578 LMOD3Q0VAK6 560 aa23.22■■□□□ 1.31
RAB39A-201ENST00000320578 PHACTR3Q96KR7 559 aa23.22■■□□□ 1.31
RAB39A-201ENST00000320578 FOXO3O43524 673 aa23.21■■□□□ 1.31
RAB39A-201ENST00000320578 NFAT5O94916 1531 aa23.19■■□□□ 1.3
RAB39A-201ENST00000320578 KDRP35968 1356 aa23.19■■□□□ 1.3
RAB39A-201ENST00000320578 HOXC9P31274 260 aa23.19■■□□□ 1.3
RAB39A-201ENST00000320578 KRT28Q7Z3Y7 464 aa23.19■■□□□ 1.3
RAB39A-201ENST00000320578 TRPM3Q9HCF6 1732 aaPredicted RBP23.19■■□□□ 1.3
RAB39A-201ENST00000320578 SLIT3O75094 1523 aa23.18■■□□□ 1.3
RAB39A-201ENST00000320578 SULT6B1Q6IMI4 303 aa23.18■■□□□ 1.3
RAB39A-201ENST00000320578 IGSF1Q8N6C5 1336 aa23.18■■□□□ 1.3
RAB39A-201ENST00000320578 SOX12O15370 315 aa23.17■■□□□ 1.3
RAB39A-201ENST00000320578 NUTM2GQ5VZR2 741 aa23.17■■□□□ 1.3
RAB39A-201ENST00000320578 USP19O94966 1318 aa23.17■■□□□ 1.3
RAB39A-201ENST00000320578 PHRF1Q9P1Y6 1649 aaKnown RBP23.17■■□□□ 1.3
RAB39A-201ENST00000320578 IP6K1Q92551 441 aa23.15■■□□□ 1.3
RAB39A-201ENST00000320578 FANCIQ9NVI1 1328 aa23.15■■□□□ 1.3
RAB39A-201ENST00000320578 AEBP1Q8IUX7 1158 aa23.13■■□□□ 1.29
RAB39A-201ENST00000320578 NPHP3Q7Z494 1330 aa23.13■■□□□ 1.29
RAB39A-201ENST00000320578 EYA1Q99502 592 aa23.12■■□□□ 1.29
RAB39A-201ENST00000320578 PLIN1O60240 522 aa23.12■■□□□ 1.29
RAB39A-201ENST00000320578 RARSP54136 660 aaKnown RBP23.12■■□□□ 1.29
RAB39A-201ENST00000320578 XIRP1Q702N8 1843 aaKnown RBP23.12■■□□□ 1.29
RAB39A-201ENST00000320578 EXOC6Q8TAG9 804 aa23.11■■□□□ 1.29
RAB39A-201ENST00000320578 IFT57Q9NWB7 429 aa23.11■■□□□ 1.29
RAB39A-201ENST00000320578 GCP02774 474 aa23.1■■□□□ 1.29
RAB39A-201ENST00000320578 ZNF853P0CG23 659 aa23.1■■□□□ 1.29
RAB39A-201ENST00000320578 GNAI1P63096 354 aa23.1■■□□□ 1.29
RAB39A-201ENST00000320578 PDE3AQ14432 1141 aa23.1■■□□□ 1.29
RAB39A-201ENST00000320578 ALS2Q96Q42 1657 aa23.1■■□□□ 1.29
RAB39A-201ENST00000320578 B4GALNT3Q6L9W6 998 aa23.09■■□□□ 1.29
RAB39A-201ENST00000320578 ARHGEF25Q86VW2 580 aa23.09■■□□□ 1.29
RAB39A-201ENST00000320578 ZNF428Q96B54 188 aa23.09■■□□□ 1.29
RAB39A-201ENST00000320578 ZNF335Q9H4Z2 1342 aaPredicted RBP23.09■■□□□ 1.29
RAB39A-201ENST00000320578 BCAR3O75815 825 aa23.08■■□□□ 1.29
RAB39A-201ENST00000320578 CCDC136Q96JN2 1154 aa23.08■■□□□ 1.29
RAB39A-201ENST00000320578 LTN1O94822 1766 aa23.07■■□□□ 1.28
RAB39A-201ENST00000320578 XPCQ01831 940 aaPredicted RBP23.07■■□□□ 1.28
RAB39A-201ENST00000320578 TSR2Q969E8 191 aaKnown RBP23.06■■□□□ 1.28
RAB39A-201ENST00000320578 EXOSC9Q06265 439 aaKnown RBP23.05■■□□□ 1.28
RAB39A-201ENST00000320578 GAS2L2Q8NHY3 880 aa23.05■■□□□ 1.28
RAB39A-201ENST00000320578 CFAP44Q96MT7 982 aa23.05■■□□□ 1.28
RAB39A-201ENST00000320578 CRBNQ96SW2 442 aa23.05■■□□□ 1.28
RAB39A-201ENST00000320578 PXDNQ92626 1479 aa23.04■■□□□ 1.28
RAB39A-201ENST00000320578 HTATSF1O43719 755 aaKnown RBP23.04■■□□□ 1.28
RAB39A-201ENST00000320578 DLG5Q8TDM6 1919 aa23.03■■□□□ 1.28
RAB39A-201ENST00000320578 TNS3Q68CZ2 1445 aa23.03■■□□□ 1.28
RAB39A-201ENST00000320578 C20orf194Q5TEA3 1177 aa23.03■■□□□ 1.28
RAB39A-201ENST00000320578 BRINP3Q76B58 766 aa23.02■■□□□ 1.28
RAB39A-201ENST00000320578 ALDH1L2Q3SY69 923 aa23.01■■□□□ 1.27
RAB39A-201ENST00000320578 SLAIN2Q9P270 581 aa23.01■■□□□ 1.27
RAB39A-201ENST00000320578 SPATA31A3Q5VYP0 1347 aa23.01■■□□□ 1.27
RAB39A-201ENST00000320578 NCAPD2Q15021 1401 aa23■■□□□ 1.27
RAB39A-201ENST00000320578 BRPF1P55201 1214 aaPredicted RBP23■■□□□ 1.27
RAB39A-201ENST00000320578 AAMPQ13685 434 aa23■■□□□ 1.27
RAB39A-201ENST00000320578 MTHFSDQ2M296 383 aaKnown RBP23■■□□□ 1.27
RAB39A-201ENST00000320578 LMOD2Q6P5Q4 547 aa23■■□□□ 1.27
RAB39A-201ENST00000320578 MED1Q15648 1581 aaPredicted RBP23■■□□□ 1.27
RAB39A-201ENST00000320578 MS4A1P11836 297 aa22.98■■□□□ 1.27
RAB39A-201ENST00000320578 THUMPD2Q9BTF0 503 aaKnown RBP22.98■■□□□ 1.27
RAB39A-201ENST00000320578 ABCC6O95255 1503 aa22.98■■□□□ 1.27
RAB39A-201ENST00000320578 MBIPQ9NS73 344 aa22.97■■□□□ 1.27
RAB39A-201ENST00000320578 SOS2Q07890 1332 aaPredicted RBP22.96■■□□□ 1.27
RAB39A-201ENST00000320578 FAM83GA6ND36 823 aa22.96■■□□□ 1.27
RAB39A-201ENST00000320578 CHL1O00533 1208 aa22.96■■□□□ 1.27
RAB39A-201ENST00000320578 CANXP27824 592 aaKnown RBP22.96■■□□□ 1.27
RAB39A-201ENST00000320578 LTV1Q96GA3 475 aaPredicted RBP22.96■■□□□ 1.27
RAB39A-201ENST00000320578 CRB1P82279 1406 aa22.95■■□□□ 1.26
RAB39A-201ENST00000320578 NBPF6Q5VWK0 638 aa22.95■■□□□ 1.26
RAB39A-201ENST00000320578 RTF1Q92541 710 aaKnown RBP22.95■■□□□ 1.26
RAB39A-201ENST00000320578 NBPF4Q96M43 638 aa22.95■■□□□ 1.26
RAB39A-201ENST00000320578 HAP1P54257 671 aaPredicted RBP22.94■■□□□ 1.26
RAB39A-201ENST00000320578 SSH1Q8WYL5 1049 aa22.94■■□□□ 1.26
RAB39A-201ENST00000320578 LAS1LQ9Y4W2 734 aaKnown RBP22.94■■□□□ 1.26
RAB39A-201ENST00000320578 VAMP4O75379 141 aa22.94■■□□□ 1.26
RAB39A-201ENST00000320578 ZKSCAN2Q63HK3 967 aa22.94■■□□□ 1.26
RAB39A-201ENST00000320578 DDX17Q92841 729 aaKnown RBP22.94■■□□□ 1.26
RAB39A-201ENST00000320578 DCTN1Q14203 1278 aa22.93■■□□□ 1.26
RAB39A-201ENST00000320578 SMC4Q9NTJ3 1288 aa22.93■■□□□ 1.26
RAB39A-201ENST00000320578 CPDO75976 1380 aa22.93■■□□□ 1.26
RAB39A-201ENST00000320578 KIAA0232Q92628 1395 aa22.93■■□□□ 1.26
RAB39A-201ENST00000320578 CAMTA1Q9Y6Y1 1673 aa22.93■■□□□ 1.26
RAB39A-201ENST00000320578 KIF16BQ96L93 1317 aa22.92■■□□□ 1.26
RAB39A-201ENST00000320578 GNAT3A8MTJ3 354 aa22.92■■□□□ 1.26
RAB39A-201ENST00000320578 ANKRD24Q8TF21 1146 aa22.92■■□□□ 1.26
RAB39A-201ENST00000320578 FRAT1Q92837 279 aaPredicted RBP22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms