RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 ASXL2Q76L83 1435 aa16.3■□□□□ 0.2
RFFL-201ENST00000315249 BECN2A8MW95 431 aa16.3■□□□□ 0.2
RFFL-201ENST00000315249 HMGB2P26583 209 aaKnown RBP16.3■□□□□ 0.2
RFFL-201ENST00000315249 TMEM132AQ24JP5 1023 aa16.3■□□□□ 0.2
RFFL-201ENST00000315249 PAXIP1Q6ZW49 1069 aaPredicted RBP16.3■□□□□ 0.2
RFFL-201ENST00000315249 BCL11BQ9C0K0 894 aaPredicted RBP16.29■□□□□ 0.2
RFFL-201ENST00000315249 BRMS1Q9HCU9 246 aa16.29■□□□□ 0.2
RFFL-201ENST00000315249 SMC3Q9UQE7 1217 aa16.29■□□□□ 0.2
RFFL-201ENST00000315249 ERC1Q8IUD2 1116 aa16.29■□□□□ 0.2
RFFL-201ENST00000315249 A0A0U1RQG5 324 aaPredicted RBP16.29■□□□□ 0.2
RFFL-201ENST00000315249 IGHMBP2P38935 993 aaKnown RBP16.29■□□□□ 0.2
RFFL-201ENST00000315249 SRCIN1Q9C0H9 1055 aa16.29■□□□□ 0.2
RFFL-201ENST00000315249 R3HCC1Q9Y3T6 440 aaKnown RBP16.29■□□□□ 0.2
RFFL-201ENST00000315249 WASLO00401 505 aaPredicted RBP16.29■□□□□ 0.2
RFFL-201ENST00000315249 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.29■□□□□ 0.2
RFFL-201ENST00000315249 MCM10Q7L590 875 aa16.28■□□□□ 0.2
RFFL-201ENST00000315249 TEX14Q8IWB6 1497 aa16.28■□□□□ 0.2
RFFL-201ENST00000315249 TNRQ92752 1358 aa16.28■□□□□ 0.2
RFFL-201ENST00000315249 BICD2Q8TD16 824 aa16.28■□□□□ 0.2
RFFL-201ENST00000315249 MAP4K4O95819 1239 aaPredicted RBP16.28■□□□□ 0.2
RFFL-201ENST00000315249 XBP1P17861 261 aa16.28■□□□□ 0.2
RFFL-201ENST00000315249 PDE4AP27815 886 aa16.28■□□□□ 0.2
RFFL-201ENST00000315249 DCTN1Q14203 1278 aa16.27■□□□□ 0.2
RFFL-201ENST00000315249 ADGRF5Q8IZF2 1346 aa16.27■□□□□ 0.19
RFFL-201ENST00000315249 ANKIB1Q9P2G1 1089 aa16.27■□□□□ 0.19
RFFL-201ENST00000315249 CCT4P50991 539 aaKnown RBP16.27■□□□□ 0.19
RFFL-201ENST00000315249 ATP2B1P20020 1258 aa16.26■□□□□ 0.19
RFFL-201ENST00000315249 DDX49Q9Y6V7 483 aaKnown RBP16.26■□□□□ 0.19
RFFL-201ENST00000315249 IPO9Q96P70 1041 aaKnown RBP16.25■□□□□ 0.19
RFFL-201ENST00000315249 HOOK1Q9UJC3 728 aaKnown RBP16.25■□□□□ 0.19
RFFL-201ENST00000315249 AK7Q96M32 723 aa16.25■□□□□ 0.19
RFFL-201ENST00000315249 TPM1P09493 284 aa16.25■□□□□ 0.19
RFFL-201ENST00000315249 THUMPD2Q9BTF0 503 aaKnown RBP16.25■□□□□ 0.19
RFFL-201ENST00000315249 LRP2BPQ9P2M1 347 aa16.24■□□□□ 0.19
RFFL-201ENST00000315249 RAI14Q9P0K7 980 aa16.24■□□□□ 0.19
RFFL-201ENST00000315249 ABCF2Q9UG63 623 aa16.24■□□□□ 0.19
RFFL-201ENST00000315249 KIF21AQ7Z4S6 1674 aa16.24■□□□□ 0.19
RFFL-201ENST00000315249 CEP126Q9P2H0 1117 aa16.24■□□□□ 0.19
RFFL-201ENST00000315249 PSMA5P28066 241 aa16.23■□□□□ 0.19
RFFL-201ENST00000315249 RPGRQ92834 1020 aaKnown RBP16.23■□□□□ 0.19
RFFL-201ENST00000315249 GOLGA6L3A6NEY3 463 aa16.23■□□□□ 0.19
RFFL-201ENST00000315249 FCHSD2O94868 740 aa16.23■□□□□ 0.19
RFFL-201ENST00000315249 ABCC5O15440 1437 aa16.23■□□□□ 0.19
RFFL-201ENST00000315249 SRGAP3O43295 1099 aa16.23■□□□□ 0.19
RFFL-201ENST00000315249 TTLL12Q14166 644 aaPredicted RBP16.23■□□□□ 0.19
RFFL-201ENST00000315249 NCKAP5LQ9HCH0 1330 aa16.23■□□□□ 0.19
RFFL-201ENST00000315249 NOS1P29475 1434 aa16.23■□□□□ 0.19
RFFL-201ENST00000315249 AMOTQ4VCS5 1084 aa16.22■□□□□ 0.19
RFFL-201ENST00000315249 NFE2L2Q16236 605 aa16.22■□□□□ 0.19
RFFL-201ENST00000315249 ACSBG1Q96GR2 724 aa16.22■□□□□ 0.19
RFFL-201ENST00000315249 BCAR3O75815 825 aa16.22■□□□□ 0.19
RFFL-201ENST00000315249 NACAP1Q9BZK3 213 aa16.22■□□□□ 0.19
RFFL-201ENST00000315249 TMOD2Q9NZR1 351 aa16.22■□□□□ 0.19
RFFL-201ENST00000315249 METTL24Q5JXM2 366 aa16.22■□□□□ 0.19
RFFL-201ENST00000315249 AACSQ86V21 672 aa16.21■□□□□ 0.19
RFFL-201ENST00000315249 ANKRD20A12PQ8NF67 263 aa16.21■□□□□ 0.19
RFFL-201ENST00000315249 MPHOSPH10O00566 681 aaKnown RBP16.21■□□□□ 0.19
RFFL-201ENST00000315249 THOC2Q8NI27 1593 aaKnown RBP16.21■□□□□ 0.19
RFFL-201ENST00000315249 RAPGEF6Q8TEU7 1601 aa16.21■□□□□ 0.19
RFFL-201ENST00000315249 HIP1O00291 1037 aa16.21■□□□□ 0.18
RFFL-201ENST00000315249 MYD88Q99836 296 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 LRRCC1Q9C099 1032 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 GPTP24298 496 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 WWC2Q6AWC2 1192 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 CDC45O75419 566 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 EMILIN1Q9Y6C2 1016 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 TMPOP42166 694 aaKnown RBP16.2■□□□□ 0.18
RFFL-201ENST00000315249 DDX11L8A8MPP1 907 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 DUSP27Q5VZP5 1158 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 RFC4P35249 363 aa16.2■□□□□ 0.18
RFFL-201ENST00000315249 TDO2P48775 406 aa16.19■□□□□ 0.18
RFFL-201ENST00000315249 NAIPQ13075 1403 aa16.19■□□□□ 0.18
RFFL-201ENST00000315249 IDH1O75874 414 aaKnown RBP16.19■□□□□ 0.18
RFFL-201ENST00000315249 TAF7Q15545 349 aaPredicted RBP16.19■□□□□ 0.18
RFFL-201ENST00000315249 KDM5BQ9UGL1 1544 aa16.18■□□□□ 0.18
RFFL-201ENST00000315249 ZNF622Q969S3 477 aaKnown RBP eCLIP16.18■□□□□ 0.18
RFFL-201ENST00000315249 TRMT112Q9UI30 125 aaKnown RBP16.18■□□□□ 0.18
RFFL-201ENST00000315249 LMTK3Q96Q04 1460 aa16.18■□□□□ 0.18
RFFL-201ENST00000315249 NUP133Q8WUM0 1156 aa16.18■□□□□ 0.18
RFFL-201ENST00000315249 ARID3AQ99856 593 aa16.18■□□□□ 0.18
RFFL-201ENST00000315249 EPS15P42566 896 aa16.18■□□□□ 0.18
RFFL-201ENST00000315249 ACEP12821 1306 aa16.18■□□□□ 0.18
RFFL-201ENST00000315249 IBSPP21815 317 aaPredicted RBP16.17■□□□□ 0.18
RFFL-201ENST00000315249 ANKRD24Q8TF21 1146 aa16.17■□□□□ 0.18
RFFL-201ENST00000315249 CDK5RAP3Q96JB5 506 aa16.17■□□□□ 0.18
RFFL-201ENST00000315249 WDR63Q8IWG1 891 aa16.17■□□□□ 0.18
RFFL-201ENST00000315249 DHX29Q7Z478 1369 aaKnown RBP16.17■□□□□ 0.18
RFFL-201ENST00000315249 CAVIN4Q5BKX8 364 aa16.17■□□□□ 0.18
RFFL-201ENST00000315249 CABLES1Q8TDN4 633 aa16.17■□□□□ 0.18
RFFL-201ENST00000315249 ZSCAN25Q6NSZ9 544 aa16.17■□□□□ 0.18
RFFL-201ENST00000315249 C22orf23Q9BZE7 217 aa16.16■□□□□ 0.18
RFFL-201ENST00000315249 WWC3Q9ULE0 1092 aa16.16■□□□□ 0.18
RFFL-201ENST00000315249 CCAR2Q8N163 923 aaKnown RBP16.16■□□□□ 0.18
RFFL-201ENST00000315249 IL1RAPL2Q9NP60 686 aa16.16■□□□□ 0.18
RFFL-201ENST00000315249 C6orf229H3BNL8 230 aa16.16■□□□□ 0.18
RFFL-201ENST00000315249 PIBF1Q8WXW3 757 aa16.16■□□□□ 0.18
RFFL-201ENST00000315249 DEKP35659 375 aaKnown RBP16.15■□□□□ 0.18
RFFL-201ENST00000315249 CCDC69A6NI79 296 aa16.15■□□□□ 0.18
RFFL-201ENST00000315249 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.15■□□□□ 0.18
RFFL-201ENST00000315249 NPHP3Q7Z494 1330 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms