RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZNF692Q9BU19 519 aaPredicted RBP25.6■■□□□ 1.69
VPS53-201ENST00000291074 NRKQ7Z2Y5 1582 aa25.6■■□□□ 1.69
VPS53-201ENST00000291074 SEC24BO95487 1268 aa25.6■■□□□ 1.69
VPS53-201ENST00000291074 ACEP12821 1306 aa25.59■■□□□ 1.69
VPS53-201ENST00000291074 DDX19BQ9UMR2 479 aa25.58■■□□□ 1.68
VPS53-201ENST00000291074 TTC21BQ7Z4L5 1316 aa25.57■■□□□ 1.68
VPS53-201ENST00000291074 KIF16BQ96L93 1317 aa25.57■■□□□ 1.68
VPS53-201ENST00000291074 RTL5Q5HYW3 569 aaPredicted RBP25.57■■□□□ 1.68
VPS53-201ENST00000291074 USP19O94966 1318 aa25.57■■□□□ 1.68
VPS53-201ENST00000291074 TSPYL6Q8N831 410 aa25.56■■□□□ 1.68
VPS53-201ENST00000291074 DEKP35659 375 aaKnown RBP25.56■■□□□ 1.68
VPS53-201ENST00000291074 ALDH1L2Q3SY69 923 aa25.55■■□□□ 1.68
VPS53-201ENST00000291074 FAM83GA6ND36 823 aa25.55■■□□□ 1.68
VPS53-201ENST00000291074 ELL2O00472 640 aaPredicted RBP25.54■■□□□ 1.68
VPS53-201ENST00000291074 AEBP1Q8IUX7 1158 aa25.53■■□□□ 1.68
VPS53-201ENST00000291074 MBIPQ9NS73 344 aa25.53■■□□□ 1.68
VPS53-201ENST00000291074 EID1Q9Y6B2 187 aa25.53■■□□□ 1.68
VPS53-201ENST00000291074 IPO8O15397 1037 aaKnown RBP25.53■■□□□ 1.68
VPS53-201ENST00000291074 USP6P35125 1406 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 DCTN1Q14203 1278 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 OVOS2A0A0J9YW53 1432 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 OVOS2Q6IE36 1432 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 VAMP4O75379 141 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 IFT57Q9NWB7 429 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 AMOTL2Q9Y2J4 779 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 FER1L4A9Z1Z3 1794 aa25.52■■□□□ 1.68
VPS53-201ENST00000291074 SOX12O15370 315 aa25.51■■□□□ 1.67
VPS53-201ENST00000291074 GNAI1P63096 354 aa25.51■■□□□ 1.67
VPS53-201ENST00000291074 EIF4A2Q14240 407 aaKnown RBP25.51■■□□□ 1.67
VPS53-201ENST00000291074 DAXXQ9UER7 740 aaPredicted RBP25.51■■□□□ 1.67
VPS53-201ENST00000291074 PLEKHG3A1L390 1219 aa25.51■■□□□ 1.67
VPS53-201ENST00000291074 CALD1Q05682 793 aaKnown RBP25.51■■□□□ 1.67
VPS53-201ENST00000291074 ZNF853P0CG23 659 aa25.5■■□□□ 1.67
VPS53-201ENST00000291074 ZBTB40Q9NUA8 1239 aa25.5■■□□□ 1.67
VPS53-201ENST00000291074 PEAK1Q9H792 1746 aa25.5■■□□□ 1.67
VPS53-201ENST00000291074 HDAC1Q13547 482 aaPredicted RBP25.49■■□□□ 1.67
VPS53-201ENST00000291074 RGPD8O14715 1765 aaPredicted RBP25.49■■□□□ 1.67
VPS53-201ENST00000291074 SLIT1O75093 1534 aa25.49■■□□□ 1.67
VPS53-201ENST00000291074 NALCNQ8IZF0 1738 aa25.49■■□□□ 1.67
VPS53-201ENST00000291074 ARHGAP23Q9P227 1491 aa25.48■■□□□ 1.67
VPS53-201ENST00000291074 SULT6B1Q6IMI4 303 aa25.48■■□□□ 1.67
VPS53-201ENST00000291074 MRPL50Q8N5N7 158 aaKnown RBP25.48■■□□□ 1.67
VPS53-201ENST00000291074 HSP90AB2PQ58FF8 381 aa25.46■■□□□ 1.67
VPS53-201ENST00000291074 C8orf58Q8NAV2 365 aa25.46■■□□□ 1.67
VPS53-201ENST00000291074 ZNF428Q96B54 188 aa25.46■■□□□ 1.67
VPS53-201ENST00000291074 LMOD3Q0VAK6 560 aa25.46■■□□□ 1.67
VPS53-201ENST00000291074 CFAP44Q96MT7 982 aa25.46■■□□□ 1.67
VPS53-201ENST00000291074 BRPF1P55201 1214 aaPredicted RBP25.45■■□□□ 1.66
VPS53-201ENST00000291074 TWISTNBQ3B726 338 aaPredicted RBP25.45■■□□□ 1.66
VPS53-201ENST00000291074 SSH2Q76I76 1423 aa25.43■■□□□ 1.66
VPS53-201ENST00000291074 TBX22Q9Y458 520 aa25.43■■□□□ 1.66
VPS53-201ENST00000291074 SMC5Q8IY18 1101 aa25.42■■□□□ 1.66
VPS53-201ENST00000291074 DIP2AQ14689 1571 aa25.42■■□□□ 1.66
VPS53-201ENST00000291074 PTCH1Q13635 1447 aa25.42■■□□□ 1.66
VPS53-201ENST00000291074 USP31Q70CQ4 1352 aa25.4■■□□□ 1.66
VPS53-201ENST00000291074 RGPD1P0DJD0 1748 aa25.4■■□□□ 1.66
VPS53-201ENST00000291074 C1orf115Q9H7X2 142 aa25.4■■□□□ 1.66
VPS53-201ENST00000291074 FMN2Q9NZ56 1722 aa25.38■■□□□ 1.65
VPS53-201ENST00000291074 MCM10Q7L590 875 aa25.38■■□□□ 1.65
VPS53-201ENST00000291074 THEMISQ8N1K5 641 aaPredicted RBP25.38■■□□□ 1.65
VPS53-201ENST00000291074 ZBTB7BO15156 539 aaPredicted RBP25.38■■□□□ 1.65
VPS53-201ENST00000291074 KRT24Q2M2I5 525 aa25.38■■□□□ 1.65
VPS53-201ENST00000291074 NGDNQ8NEJ9 315 aaKnown RBP25.38■■□□□ 1.65
VPS53-201ENST00000291074 MAP3K19Q56UN5 1328 aa25.37■■□□□ 1.65
VPS53-201ENST00000291074 RIMS1Q86UR5 1692 aaKnown RBP25.37■■□□□ 1.65
VPS53-201ENST00000291074 ARHGAP45Q92619 1136 aa25.37■■□□□ 1.65
VPS53-201ENST00000291074 PIK3R4Q99570 1358 aa25.37■■□□□ 1.65
VPS53-201ENST00000291074 XRN1Q8IZH2 1706 aaKnown RBP25.35■■□□□ 1.65
VPS53-201ENST00000291074 ABCC4O15439 1325 aa25.35■■□□□ 1.65
VPS53-201ENST00000291074 USP35Q9P2H5 1018 aa25.35■■□□□ 1.65
VPS53-201ENST00000291074 PRKCSHP14314 528 aaPredicted RBP25.34■■□□□ 1.65
VPS53-201ENST00000291074 NFKBIBQ15653 356 aa25.34■■□□□ 1.65
VPS53-201ENST00000291074 TBC1D32Q96NH3 1257 aa25.34■■□□□ 1.65
VPS53-201ENST00000291074 LNPKQ9C0E8 428 aa25.34■■□□□ 1.65
VPS53-201ENST00000291074 TTC21AQ8NDW8 1320 aa25.34■■□□□ 1.65
VPS53-201ENST00000291074 PIK3C2AO00443 1686 aa25.34■■□□□ 1.65
VPS53-201ENST00000291074 UPF2Q9HAU5 1272 aaKnown RBP25.34■■□□□ 1.65
VPS53-201ENST00000291074 KCNA6P17658 529 aa25.32■■□□□ 1.64
VPS53-201ENST00000291074 NUCB1Q02818 461 aa25.32■■□□□ 1.64
VPS53-201ENST00000291074 FOXO3O43524 673 aa25.3■■□□□ 1.64
VPS53-201ENST00000291074 NUTM2GQ5VZR2 741 aa25.29■■□□□ 1.64
VPS53-201ENST00000291074 FLT4P35916 1363 aa25.29■■□□□ 1.64
VPS53-201ENST00000291074 CHL1O00533 1208 aa25.29■■□□□ 1.64
VPS53-201ENST00000291074 CHD1LQ86WJ1 897 aa25.29■■□□□ 1.64
VPS53-201ENST00000291074 SBNO1A3KN83 1393 aa25.29■■□□□ 1.64
VPS53-201ENST00000291074 ARHGEF10O15013 1369 aa25.28■■□□□ 1.64
VPS53-201ENST00000291074 SIRT2Q8IXJ6 389 aa25.28■■□□□ 1.64
VPS53-201ENST00000291074 API5Q9BZZ5 524 aaKnown RBP25.28■■□□□ 1.64
VPS53-201ENST00000291074 TRHP20396 242 aaPredicted RBP25.28■■□□□ 1.64
VPS53-201ENST00000291074 MFAP1P55081 439 aaKnown RBP25.28■■□□□ 1.64
VPS53-201ENST00000291074 CEP170BQ9Y4F5 1589 aaPredicted RBP25.27■■□□□ 1.64
VPS53-201ENST00000291074 AMPHP49418 695 aa25.27■■□□□ 1.64
VPS53-201ENST00000291074 MIS18AQ9NYP9 233 aa25.27■■□□□ 1.64
VPS53-201ENST00000291074 MTHFSDQ2M296 383 aaKnown RBP25.26■■□□□ 1.63
VPS53-201ENST00000291074 NLRP6P59044 892 aa25.25■■□□□ 1.63
VPS53-201ENST00000291074 BECN1Q14457 450 aa25.25■■□□□ 1.63
VPS53-201ENST00000291074 ANKRD45Q5TZF3 282 aa25.25■■□□□ 1.63
VPS53-201ENST00000291074 CRB1P82279 1406 aa25.25■■□□□ 1.63
VPS53-201ENST00000291074 MARF1Q9Y4F3 1742 aaKnown RBP25.25■■□□□ 1.63
VPS53-201ENST00000291074 EYA1Q99502 592 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms