RNA–Protein interactions for RNA: ENST00000289292.11

SHROOM4-201, Transcript of shroom family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM4, Length 6,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-201ENST00000289292 ZSCAN30Q86W11 494 aa18.24■□□□□ 0.51
SHROOM4-201ENST00000289292 PDRG1Q9NUG6 133 aa18.24■□□□□ 0.51
SHROOM4-201ENST00000289292 MIS18AQ9NYP9 233 aa18.24■□□□□ 0.51
SHROOM4-201ENST00000289292 NSD3Q9BZ95 1437 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 PDCP20941 246 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 NLRP2Q9NX02 1062 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 LEKR1Q6ZMV7 388 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 AEBP1Q8IUX7 1158 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 RAPGEF4Q8WZA2 1011 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 TNPO1Q92973 898 aaKnown RBP18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 EFCAB5A4FU69 1503 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 SPATA32Q96LK8 384 aa18.23■□□□□ 0.51
SHROOM4-201ENST00000289292 HECW1Q76N89 1606 aa18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 KRT85P78386 507 aa18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 TXNDC2Q86VQ3 553 aa18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 STAC3Q96MF2 364 aa18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 CIZ1Q9ULV3 898 aaPredicted RBP18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 HDGFL1Q5TGJ6 251 aa18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 DHX37Q8IY37 1157 aaKnown RBP18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 DDX54Q8TDD1 881 aaKnown RBP18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 GAS2L2Q8NHY3 880 aa18.22■□□□□ 0.51
SHROOM4-201ENST00000289292 CCT4P50991 539 aaKnown RBP18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 FILIP1Q7Z7B0 1213 aa18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 LARP6Q9BRS8 491 aaKnown RBP18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 EXOC6BQ9Y2D4 811 aa18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 IGHDP01880 384 aa18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 RARSP54136 660 aaKnown RBP18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 TRIM34Q9BYJ4 488 aa18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 TCEAL9Q9UHQ7 104 aa18.21■□□□□ 0.51
SHROOM4-201ENST00000289292 NUP62CLQ9H1M0 184 aa18.21■□□□□ 0.5
SHROOM4-201ENST00000289292 BRMS1Q9HCU9 246 aa18.21■□□□□ 0.5
SHROOM4-201ENST00000289292 CASTP20810 708 aaKnown RBP18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 NKTRP30414 1462 aaKnown RBP18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 TMPOP42166 694 aaKnown RBP18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 AXDND1Q5T1B0 1012 aaPredicted RBP18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 ABTB2Q8N961 1025 aa18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 HIP1O00291 1037 aa18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 AACSQ86V21 672 aa18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 EPS15P42566 896 aa18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 CALRP27797 417 aaKnown RBP18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 TTC39AQ5SRH9 613 aa18.2■□□□□ 0.5
SHROOM4-201ENST00000289292 DCTN1Q14203 1278 aa18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 PDCL2Q8N4E4 241 aa18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 GPRASP1Q5JY77 1395 aa18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 MYL6BP14649 208 aa18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 DDX11Q96FC9 970 aa18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 RDXP35241 583 aaKnown RBP18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 FERMT3Q86UX7 667 aa18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 RBM27Q9P2N5 1060 aaKnown RBP18.19■□□□□ 0.5
SHROOM4-201ENST00000289292 CYB5RLQ6IPT4 315 aa18.18■□□□□ 0.5
SHROOM4-201ENST00000289292 CCDC83Q8IWF9 413 aa18.18■□□□□ 0.5
SHROOM4-201ENST00000289292 UPF3BQ9BZI7 483 aaKnown RBP18.18■□□□□ 0.5
SHROOM4-201ENST00000289292 PTPN23Q9H3S7 1636 aa18.18■□□□□ 0.5
SHROOM4-201ENST00000289292 CCP110O43303 1012 aa18.18■□□□□ 0.5
SHROOM4-201ENST00000289292 SSH1Q8WYL5 1049 aa18.18■□□□□ 0.5
SHROOM4-201ENST00000289292 SRGAP3O43295 1099 aa18.17■□□□□ 0.5
SHROOM4-201ENST00000289292 CT47B1P0C2W7 299 aaPredicted RBP18.17■□□□□ 0.5
SHROOM4-201ENST00000289292 ERC1Q8IUD2 1116 aa18.17■□□□□ 0.5
SHROOM4-201ENST00000289292 FAM193AP78312 1265 aa18.17■□□□□ 0.5
SHROOM4-201ENST00000289292 SMARCE1Q969G3 411 aa18.17■□□□□ 0.5
SHROOM4-201ENST00000289292 FILIP1LQ4L180 1135 aa18.17■□□□□ 0.5
SHROOM4-201ENST00000289292 ERCC4Q92889 916 aaPredicted RBP18.17■□□□□ 0.5
SHROOM4-201ENST00000289292 XBP1P17861 261 aa18.16■□□□□ 0.5
SHROOM4-201ENST00000289292 ZHX1Q9UKY1 873 aaPredicted RBP18.16■□□□□ 0.5
SHROOM4-201ENST00000289292 UBE2Q2Q8WVN8 375 aa18.16■□□□□ 0.5
SHROOM4-201ENST00000289292 GDPD2Q9HCC8 539 aa18.16■□□□□ 0.5
SHROOM4-201ENST00000289292 SRCIN1Q9C0H9 1055 aa18.15■□□□□ 0.5
SHROOM4-201ENST00000289292 TSPYL1Q9H0U9 437 aa18.15■□□□□ 0.5
SHROOM4-201ENST00000289292 OFD1O75665 1012 aa18.15■□□□□ 0.5
SHROOM4-201ENST00000289292 BLOC1S2Q6QNY1 142 aa18.15■□□□□ 0.5
SHROOM4-201ENST00000289292 ANKRD1Q15327 319 aa18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 SPINK5Q9NQ38 1064 aaPredicted RBP18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 MAGEC2Q9UBF1 373 aaPredicted RBP18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 HSP90AB3PQ58FF7 597 aa18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 DUSP27Q5VZP5 1158 aa18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 ZMYND15Q9H091 742 aa18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 MCM10Q7L590 875 aa18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 NCOA1Q15788 1441 aa18.14■□□□□ 0.49
SHROOM4-201ENST00000289292 HSP90AB2PQ58FF8 381 aa18.13■□□□□ 0.49
SHROOM4-201ENST00000289292 TMX1Q9H3N1 280 aa18.13■□□□□ 0.49
SHROOM4-201ENST00000289292 TBC1D2BQ9UPU7 963 aa18.13■□□□□ 0.49
SHROOM4-201ENST00000289292 CT47A1Q5JQC4 288 aaPredicted RBP18.13■□□□□ 0.49
SHROOM4-201ENST00000289292 USP25Q9UHP3 1055 aa18.13■□□□□ 0.49
SHROOM4-201ENST00000289292 MAP3K11Q16584 847 aa18.13■□□□□ 0.49
SHROOM4-201ENST00000289292 PPFIBP1Q86W92 1011 aa18.13■□□□□ 0.49
SHROOM4-201ENST00000289292 CDR1P51861 262 aa18.12■□□□□ 0.49
SHROOM4-201ENST00000289292 SART3Q15020 963 aaKnown RBP18.12■□□□□ 0.49
SHROOM4-201ENST00000289292 SYNJ2O15056 1496 aa18.12■□□□□ 0.49
SHROOM4-201ENST00000289292 LRPPRCP42704 1394 aaKnown RBP18.12■□□□□ 0.49
SHROOM4-201ENST00000289292 PLCD4Q9BRC7 762 aa18.12■□□□□ 0.49
SHROOM4-201ENST00000289292 FKBP4Q02790 459 aaKnown RBP eCLIP18.11■□□□□ 0.49
SHROOM4-201ENST00000289292 PRPF40BQ6NWY9 871 aaKnown RBP18.11■□□□□ 0.49
SHROOM4-201ENST00000289292 ANKRD30BQ9BXX2 1392 aa18.11■□□□□ 0.49
SHROOM4-201ENST00000289292 NESP48681 1621 aa18.11■□□□□ 0.49
SHROOM4-201ENST00000289292 TRERF1Q96PN7 1200 aa18.11■□□□□ 0.49
SHROOM4-201ENST00000289292 NUP133Q8WUM0 1156 aa18.11■□□□□ 0.49
SHROOM4-201ENST00000289292 NFE2L2Q16236 605 aa18.11■□□□□ 0.49
SHROOM4-201ENST00000289292 PLEKHO1Q53GL0 409 aaPredicted RBP18.1■□□□□ 0.49
SHROOM4-201ENST00000289292 CCDC158Q5M9N0 1113 aa18.1■□□□□ 0.49
SHROOM4-201ENST00000289292 CNNM1Q9NRU3 951 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms