RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 CEBPAP49715 358 aaPredicted RBP18.42■□□□□ 0.54
CNOT3-201ENST00000221232 CHD1LQ86WJ1 897 aa18.42■□□□□ 0.54
CNOT3-201ENST00000221232 MED14O60244 1454 aa18.41■□□□□ 0.54
CNOT3-201ENST00000221232 FAM135BQ49AJ0 1406 aa18.41■□□□□ 0.54
CNOT3-201ENST00000221232 PRR36Q9H6K5 1346 aa18.41■□□□□ 0.54
CNOT3-201ENST00000221232 NUCB1Q02818 461 aa18.4■□□□□ 0.54
CNOT3-201ENST00000221232 MCM10Q7L590 875 aa18.4■□□□□ 0.54
CNOT3-201ENST00000221232 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.4■□□□□ 0.543e-6■■□□□ 14.2
CNOT3-201ENST00000221232 CLTCQ00610 1675 aaKnown RBP18.4■□□□□ 0.54
CNOT3-201ENST00000221232 MIS18AQ9NYP9 233 aa18.4■□□□□ 0.54
CNOT3-201ENST00000221232 ANTXR1Q9H6X2 564 aa18.39■□□□□ 0.53
CNOT3-201ENST00000221232 IFT57Q9NWB7 429 aa18.39■□□□□ 0.53
CNOT3-201ENST00000221232 APBB1O00213 710 aa18.38■□□□□ 0.53
CNOT3-201ENST00000221232 HSP90AB2PQ58FF8 381 aa18.38■□□□□ 0.53
CNOT3-201ENST00000221232 PPP6R1Q9UPN7 881 aa18.38■□□□□ 0.53
CNOT3-201ENST00000221232 CALD1Q05682 793 aaKnown RBP18.37■□□□□ 0.53
CNOT3-201ENST00000221232 SIRT2Q8IXJ6 389 aa18.37■□□□□ 0.53
CNOT3-201ENST00000221232 CFAP44Q96MT7 982 aa18.37■□□□□ 0.53
CNOT3-201ENST00000221232 CPS1P31327 1500 aa18.36■□□□□ 0.53
CNOT3-201ENST00000221232 EIF4A2Q14240 407 aaKnown RBP18.36■□□□□ 0.53
CNOT3-201ENST00000221232 GZF1Q9H116 711 aaPredicted RBP18.36■□□□□ 0.53
CNOT3-201ENST00000221232 EDC4Q6P2E9 1401 aaKnown RBP18.36■□□□□ 0.53
CNOT3-201ENST00000221232 CPSF1Q10570 1443 aaKnown RBP18.36■□□□□ 0.53
CNOT3-201ENST00000221232 ZNF853P0CG23 659 aa18.36■□□□□ 0.53
CNOT3-201ENST00000221232 FOXD4L1Q9NU39 408 aa18.36■□□□□ 0.53
CNOT3-201ENST00000221232 ACEP12821 1306 aa18.35■□□□□ 0.53
CNOT3-201ENST00000221232 ATP7BP35670 1465 aa18.35■□□□□ 0.53
CNOT3-201ENST00000221232 LTKP29376 864 aa18.35■□□□□ 0.53
CNOT3-201ENST00000221232 HDGFP51858 240 aaKnown RBP18.35■□□□□ 0.53
CNOT3-201ENST00000221232 MAP2P11137 1827 aaKnown RBP18.34■□□□□ 0.53
CNOT3-201ENST00000221232 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.34■□□□□ 0.53
CNOT3-201ENST00000221232 ROBO2Q9HCK4 1378 aa18.34■□□□□ 0.53
CNOT3-201ENST00000221232 FOXO3O43524 673 aa18.33■□□□□ 0.52
CNOT3-201ENST00000221232 C16orf71Q8IYS4 520 aaPredicted RBP18.32■□□□□ 0.52
CNOT3-201ENST00000221232 ZNF692Q9BU19 519 aaPredicted RBP18.32■□□□□ 0.52
CNOT3-201ENST00000221232 TTC21BQ7Z4L5 1316 aa18.32■□□□□ 0.52
CNOT3-201ENST00000221232 LMOD3Q0VAK6 560 aa18.32■□□□□ 0.52
CNOT3-201ENST00000221232 NUTM2GQ5VZR2 741 aa18.32■□□□□ 0.52
CNOT3-201ENST00000221232 HSCBQ8IWL3 235 aa18.31■□□□□ 0.52
CNOT3-201ENST00000221232 ZNF428Q96B54 188 aa18.31■□□□□ 0.52
CNOT3-201ENST00000221232 DIP2BQ9P265 1576 aa18.31■□□□□ 0.52
CNOT3-201ENST00000221232 KIF20BQ96Q89 1820 aa18.3■□□□□ 0.52
CNOT3-201ENST00000221232 ARHGAP45Q92619 1136 aa18.3■□□□□ 0.52
CNOT3-201ENST00000221232 RBM42Q9BTD8 480 aaKnown RBP18.3■□□□□ 0.52
CNOT3-201ENST00000221232 ANKRD26Q9UPS8 1709 aa18.3■□□□□ 0.52
CNOT3-201ENST00000221232 TNRQ92752 1358 aa18.29■□□□□ 0.52
CNOT3-201ENST00000221232 GCC1Q96CN9 775 aa18.29■□□□□ 0.52
CNOT3-201ENST00000221232 BRPF1P55201 1214 aaPredicted RBP18.28■□□□□ 0.52
CNOT3-201ENST00000221232 API5Q9BZZ5 524 aaKnown RBP18.28■□□□□ 0.52
CNOT3-201ENST00000221232 VIRMAQ69YN4 1812 aaKnown RBP18.28■□□□□ 0.52
CNOT3-201ENST00000221232 RIMBP3CA6NJZ7 1639 aa18.28■□□□□ 0.52
CNOT3-201ENST00000221232 RIMBP3BA6NNM3 1639 aa18.28■□□□□ 0.52
CNOT3-201ENST00000221232 RIMBP3Q9UFD9 1639 aa18.28■□□□□ 0.52
CNOT3-201ENST00000221232 SPATA31D1Q6ZQQ2 1576 aa18.28■□□□□ 0.52
CNOT3-201ENST00000221232 SLC4A10Q6U841 1118 aa18.28■□□□□ 0.52
CNOT3-201ENST00000221232 TBC1D9Q6ZT07 1266 aa18.28■□□□□ 0.52
CNOT3-201ENST00000221232 DLC1Q96QB1 1528 aa18.28■□□□□ 0.52
CNOT3-201ENST00000221232 ABCC4O15439 1325 aa18.27■□□□□ 0.52
CNOT3-201ENST00000221232 SMARCA5O60264 1052 aaPredicted RBP18.27■□□□□ 0.52
CNOT3-201ENST00000221232 PLEKHG5O94827 1062 aa18.27■□□□□ 0.52
CNOT3-201ENST00000221232 NECTIN2Q92692 538 aa18.27■□□□□ 0.52
CNOT3-201ENST00000221232 AATKQ6ZMQ8 1374 aa18.27■□□□□ 0.52
CNOT3-201ENST00000221232 NGDNQ8NEJ9 315 aaKnown RBP18.26■□□□□ 0.51
CNOT3-201ENST00000221232 OTUD7AQ8TE49 926 aaPredicted RBP18.26■□□□□ 0.51
CNOT3-201ENST00000221232 SLC4A2P04920 1241 aa18.26■□□□□ 0.51
CNOT3-201ENST00000221232 BMP2KLQ5H9B9 411 aa18.26■□□□□ 0.51
CNOT3-201ENST00000221232 TMEM2Q9UHN6 1383 aa18.25■□□□□ 0.51
CNOT3-201ENST00000221232 HSP90AB1P08238 724 aaKnown RBP18.25■□□□□ 0.51
CNOT3-201ENST00000221232 AGLP35573 1532 aa18.25■□□□□ 0.51
CNOT3-201ENST00000221232 F6X3S4 739 aa18.25■□□□□ 0.51
CNOT3-201ENST00000221232 CD2BP2O95400 341 aaKnown RBP18.25■□□□□ 0.51
CNOT3-201ENST00000221232 HSP90AA1P07900 732 aaKnown RBP18.25■□□□□ 0.51
CNOT3-201ENST00000221232 MCM4P33991 863 aa18.25■□□□□ 0.51
CNOT3-201ENST00000221232 CHMP4BQ9H444 224 aaKnown RBP18.25■□□□□ 0.51
CNOT3-201ENST00000221232 CHMP5Q9NZZ3 219 aa18.25■□□□□ 0.51
CNOT3-201ENST00000221232 AMOTL2Q9Y2J4 779 aa18.25■□□□□ 0.51
CNOT3-201ENST00000221232 CDK12Q9NYV4 1490 aaPredicted RBP18.25■□□□□ 0.51
CNOT3-201ENST00000221232 LTV1Q96GA3 475 aaPredicted RBP18.24■□□□□ 0.51
CNOT3-201ENST00000221232 MEIS3Q99687 375 aa18.23■□□□□ 0.51
CNOT3-201ENST00000221232 CHL1O00533 1208 aa18.23■□□□□ 0.51
CNOT3-201ENST00000221232 AMPHP49418 695 aa18.23■□□□□ 0.51
CNOT3-201ENST00000221232 MTHFSDQ2M296 383 aaKnown RBP18.23■□□□□ 0.51
CNOT3-201ENST00000221232 G2E3Q7L622 706 aa18.23■□□□□ 0.51
CNOT3-201ENST00000221232 RBM33Q96EV2 1170 aaKnown RBP18.23■□□□□ 0.51
CNOT3-201ENST00000221232 NRXN3Q9Y4C0 1643 aa18.22■□□□□ 0.51
CNOT3-201ENST00000221232 PTCH1Q13635 1447 aa18.22■□□□□ 0.51
CNOT3-201ENST00000221232 GSPT1P15170 499 aaKnown RBP18.22■□□□□ 0.51
CNOT3-201ENST00000221232 RBM25P49756 843 aaKnown RBP18.22■□□□□ 0.51
CNOT3-201ENST00000221232 C14orf37Q86TY3 774 aa18.22■□□□□ 0.51
CNOT3-201ENST00000221232 RTF1Q92541 710 aaKnown RBP18.22■□□□□ 0.51
CNOT3-201ENST00000221232 MAP3K19Q56UN5 1328 aa18.22■□□□□ 0.51
CNOT3-201ENST00000221232 CDC42BPGQ6DT37 1551 aa18.22■□□□□ 0.51
CNOT3-201ENST00000221232 TSPYL4Q9UJ04 414 aa18.21■□□□□ 0.51
CNOT3-201ENST00000221232 PLEKHM2Q8IWE5 1019 aa18.21■□□□□ 0.51
CNOT3-201ENST00000221232 SIRT1Q96EB6 747 aa18.21■□□□□ 0.51
CNOT3-201ENST00000221232 KIF2CQ99661 725 aa18.21■□□□□ 0.51
CNOT3-201ENST00000221232 EID1Q9Y6B2 187 aa18.2■□□□□ 0.5
CNOT3-201ENST00000221232 SETD1AO15047 1707 aaKnown RBP18.2■□□□□ 0.5
CNOT3-201ENST00000221232 PLEKHG3A1L390 1219 aa18.19■□□□□ 0.5
CNOT3-201ENST00000221232 PIK3R4Q99570 1358 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms