RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IL13P35225 146 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 TNPO1Q92973 898 aaKnown RBP13.47□□□□□ -0.25
USP28-201ENST00000003302 DLG5Q8TDM6 1919 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 ALKQ9UM73 1620 aa13.47□□□□□ -0.25
USP28-201ENST00000003302 FOXO3O43524 673 aa13.46□□□□□ -0.25
USP28-201ENST00000003302 GAS2L2Q8NHY3 880 aa13.46□□□□□ -0.25
USP28-201ENST00000003302 TERF2IPQ9NYB0 399 aa13.46□□□□□ -0.25
USP28-201ENST00000003302 RICTORQ6R327 1708 aa13.46□□□□□ -0.25
USP28-201ENST00000003302 STAG3Q9UJ98 1225 aa13.46□□□□□ -0.26
USP28-201ENST00000003302 PREX1Q8TCU6 1659 aa13.45□□□□□ -0.26
USP28-201ENST00000003302 NSD2O96028 1365 aa13.45□□□□□ -0.26
USP28-201ENST00000003302 FSD2A1L4K1 749 aa13.45□□□□□ -0.26
USP28-201ENST00000003302 PRR36Q9H6K5 1346 aa13.44□□□□□ -0.26
USP28-201ENST00000003302 SSFA2P28290 1259 aa13.43□□□□□ -0.26
USP28-201ENST00000003302 TWISTNBQ3B726 338 aaPredicted RBP13.43□□□□□ -0.26
USP28-201ENST00000003302 FCHSD2O94868 740 aa13.43□□□□□ -0.26
USP28-201ENST00000003302 NFE2L2Q16236 605 aa13.43□□□□□ -0.26
USP28-201ENST00000003302 HDGFL2Q7Z4V5 671 aaPredicted RBP13.43□□□□□ -0.26
USP28-201ENST00000003302 HSP90AB2PQ58FF8 381 aa13.42□□□□□ -0.26
USP28-201ENST00000003302 SLC52A1Q9NWF4 448 aa13.42□□□□□ -0.26
USP28-201ENST00000003302 F6X3S4 739 aa13.42□□□□□ -0.26
USP28-201ENST00000003302 RBM25P49756 843 aaKnown RBP13.42□□□□□ -0.26
USP28-201ENST00000003302 PLPPR3Q6T4P5 718 aa13.42□□□□□ -0.26
USP28-201ENST00000003302 TSPOAP1O95153 1857 aa13.42□□□□□ -0.26
USP28-201ENST00000003302 ZNF853P0CG23 659 aa13.42□□□□□ -0.26
USP28-201ENST00000003302 RIMBP3CA6NJZ7 1639 aa13.41□□□□□ -0.26
USP28-201ENST00000003302 RIMBP3BA6NNM3 1639 aa13.41□□□□□ -0.26
USP28-201ENST00000003302 RIMBP3Q9UFD9 1639 aa13.41□□□□□ -0.26
USP28-201ENST00000003302 CHMP5Q9NZZ3 219 aa13.41□□□□□ -0.26
USP28-201ENST00000003302 KIF16BQ96L93 1317 aa13.41□□□□□ -0.26
USP28-201ENST00000003302 G2E3Q7L622 706 aa13.41□□□□□ -0.26
USP28-201ENST00000003302 ANKRD26Q9UPS8 1709 aa13.41□□□□□ -0.26
USP28-201ENST00000003302 MEIS3Q99687 375 aa13.4□□□□□ -0.26
USP28-201ENST00000003302 KIF20BQ96Q89 1820 aa13.4□□□□□ -0.26
USP28-201ENST00000003302 SULT6B1Q6IMI4 303 aa13.4□□□□□ -0.26
USP28-201ENST00000003302 NECTIN2Q92692 538 aa13.4□□□□□ -0.26
USP28-201ENST00000003302 NCOA3Q9Y6Q9 1424 aa13.4□□□□□ -0.26
USP28-201ENST00000003302 PLEKHM2Q8IWE5 1019 aa13.4□□□□□ -0.26
USP28-201ENST00000003302 HSCBQ8IWL3 235 aa13.39□□□□□ -0.27
USP28-201ENST00000003302 RIMS1Q86UR5 1692 aaKnown RBP13.39□□□□□ -0.27
USP28-201ENST00000003302 ABCC4O15439 1325 aa13.39□□□□□ -0.27
USP28-201ENST00000003302 IL16Q14005 1332 aa13.39□□□□□ -0.27
USP28-201ENST00000003302 PUS7Q96PZ0 661 aaKnown RBP13.39□□□□□ -0.27
USP28-201ENST00000003302 BMP2KLQ5H9B9 411 aa13.39□□□□□ -0.27
USP28-201ENST00000003302 ZGPATQ8N5A5 531 aaKnown RBP13.39□□□□□ -0.27
USP28-201ENST00000003302 NUDT16Q96DE0 195 aaKnown RBP13.39□□□□□ -0.27
USP28-201ENST00000003302 RGS12O14924 1447 aa13.38□□□□□ -0.27
USP28-201ENST00000003302 GOLGA6L3A6NEY3 463 aa13.38□□□□□ -0.27
USP28-201ENST00000003302 FAM43AQ8N2R8 423 aa13.38□□□□□ -0.27
USP28-201ENST00000003302 FOXD4L5Q5VV16 416 aaPredicted RBP13.38□□□□□ -0.27
USP28-201ENST00000003302 FOXD4L4Q8WXT5 416 aaPredicted RBP13.38□□□□□ -0.27
USP28-201ENST00000003302 ARHGAP31Q2M1Z3 1444 aa13.38□□□□□ -0.27
USP28-201ENST00000003302 ALDH1L2Q3SY69 923 aa13.38□□□□□ -0.27
USP28-201ENST00000003302 ZNF428Q96B54 188 aa13.38□□□□□ -0.27
USP28-201ENST00000003302 CLTCQ00610 1675 aaKnown RBP13.37□□□□□ -0.27
USP28-201ENST00000003302 CT47B1P0C2W7 299 aaPredicted RBP13.37□□□□□ -0.27
USP28-201ENST00000003302 FAM69CQ0P6D2 419 aa13.37□□□□□ -0.27
USP28-201ENST00000003302 EIF4A2Q14240 407 aaKnown RBP13.37□□□□□ -0.27
USP28-201ENST00000003302 CFAP74Q9C0B2 1584 aa13.37□□□□□ -0.27
USP28-201ENST00000003302 WASLO00401 505 aaPredicted RBP13.37□□□□□ -0.27
USP28-201ENST00000003302 ZFYVE9O95405 1425 aa13.36□□□□□ -0.27
USP28-201ENST00000003302 A2ML1A8K2U0 1454 aa13.36□□□□□ -0.27
USP28-201ENST00000003302 HSP90AB1P08238 724 aaKnown RBP13.36□□□□□ -0.27
USP28-201ENST00000003302 PTCH1Q13635 1447 aa13.36□□□□□ -0.27
USP28-201ENST00000003302 IPO8O15397 1037 aaKnown RBP13.36□□□□□ -0.27
USP28-201ENST00000003302 MSH6P52701 1360 aa13.36□□□□□ -0.27
USP28-201ENST00000003302 ATP10DQ9P241 1426 aa13.36□□□□□ -0.27
USP28-201ENST00000003302 GOLGB1Q14789 3259 aaKnown RBP13.36□□□□□ -0.27
USP28-201ENST00000003302 IL25Q9H293 177 aa13.36□□□□□ -0.27
USP28-201ENST00000003302 RIMS2Q9UQ26 1411 aa13.36□□□□□ -0.27
USP28-201ENST00000003302 CPSF1Q10570 1443 aaKnown RBP13.35□□□□□ -0.27
USP28-201ENST00000003302 AAMPQ13685 434 aa13.35□□□□□ -0.27
USP28-201ENST00000003302 CFAP44Q96MT7 982 aa13.35□□□□□ -0.27
USP28-201ENST00000003302 NSFL1CQ9UNZ2 370 aaKnown RBP13.35□□□□□ -0.27
USP28-201ENST00000003302 SETD1AO15047 1707 aaKnown RBP13.35□□□□□ -0.27
USP28-201ENST00000003302 NUTM2GQ5VZR2 741 aa13.35□□□□□ -0.27
USP28-201ENST00000003302 RAB3GAP1Q15042 981 aa13.34□□□□□ -0.27
USP28-201ENST00000003302 NRXN3Q9Y4C0 1643 aa13.34□□□□□ -0.27
USP28-201ENST00000003302 GRPEL1Q9HAV7 217 aa13.34□□□□□ -0.27
USP28-201ENST00000003302 DLC1Q96QB1 1528 aa13.34□□□□□ -0.27
USP28-201ENST00000003302 ZMYM3Q14202 1370 aa13.34□□□□□ -0.27
USP28-201ENST00000003302 IFT57Q9NWB7 429 aa13.33□□□□□ -0.27
USP28-201ENST00000003302 PIK3R4Q99570 1358 aa13.33□□□□□ -0.28
USP28-201ENST00000003302 SDSP20132 328 aa13.33□□□□□ -0.28
USP28-201ENST00000003302 SLC4A10Q6U841 1118 aa13.33□□□□□ -0.28
USP28-201ENST00000003302 RBM33Q96EV2 1170 aaKnown RBP13.33□□□□□ -0.28
USP28-201ENST00000003302 SLC26A8Q96RN1 970 aa13.33□□□□□ -0.28
USP28-201ENST00000003302 ROBO2Q9HCK4 1378 aa13.33□□□□□ -0.28
USP28-201ENST00000003302 FOXD4L6Q3SYB3 417 aaPredicted RBP13.33□□□□□ -0.28
USP28-201ENST00000003302 FOXD4L3Q6VB84 417 aaPredicted RBP13.33□□□□□ -0.28
USP28-201ENST00000003302 NOL8Q76FK4 1167 aaKnown RBP13.33□□□□□ -0.28
USP28-201ENST00000003302 CDC42BPGQ6DT37 1551 aa13.32□□□□□ -0.28
USP28-201ENST00000003302 CEBPAP49715 358 aaPredicted RBP13.32□□□□□ -0.28
USP28-201ENST00000003302 CEP85Q6P2H3 762 aa13.32□□□□□ -0.28
USP28-201ENST00000003302 EXOC6BQ9Y2D4 811 aa13.32□□□□□ -0.28
USP28-201ENST00000003302 DIP2BQ9P265 1576 aa13.32□□□□□ -0.28
USP28-201ENST00000003302 PLEKHG5O94827 1062 aa13.32□□□□□ -0.28
USP28-201ENST00000003302 RBM27Q9P2N5 1060 aaKnown RBP13.32□□□□□ -0.28
USP28-201ENST00000003302 NEO1Q92859 1461 aa13.32□□□□□ -0.28
USP28-201ENST00000003302 GNAI1P63096 354 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms