RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 BOP1Q14137 746 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 GXYLT1Q4G148 440 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 HPS1Q92902 700 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CDH17Q12864 832 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 XRRA1Q6P2D8 792 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 TRIM40Q6P9F5 258 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 BHLHE22Q8NFJ8 381 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 FNDC11Q9BVV2 318 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ZMYM5Q9UJ78 669 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 TBX22Q9Y458 520 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CYP2C9P11712 490 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CHST15Q7LFX5 561 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CD101Q93033 1021 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM136AQ96C01 138 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 RNF31Q96EP0 1072 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ABCC10Q5T3U5 1492 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 C19orf81C9J6K1 198 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 SNAPC5O75971 98 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 FSHRP23945 695 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ENPEPQ07075 957 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 NR1I3Q14994 352 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 NECTIN1Q15223 517 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 GJD3Q8N144 294 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 NELL1Q92832 810 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 GNEQ9Y223 722 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 AXIN2Q9Y2T1 843 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 BGNP21810 368 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 KCNJ1P48048 391 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 NR1H2P55055 460 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ACSM2AQ08AH3 577 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 NRF1Q16656 503 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ACSM2BQ68CK6 577 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 EIF5AL1Q6IS14 154 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 COL26A1Q96A83 441 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 C11orf24Q96F05 449 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF512BQ96KM6 892 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ZSWIM1Q9BR11 485 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 TMBIM4Q9HC24 238 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 MYO5CQ9NQX4 1742 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 PPEF2O14830 753 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 OGTO15294 1046 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 LSM8O95777 96 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 NR2F1P10589 423 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 DGKAP23743 735 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 PTX3P26022 381 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 RHEBQ15382 184 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 IGSF6O95976 241 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 MTHFD1P11586 935 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 DNAJB2P25686 324 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF234Q14588 700 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 LSM12Q3MHD2 195 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 MARC1Q5VT66 337 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 MGME1Q9BQP7 344 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 XKR8Q9H6D3 395 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 PCDHGB5Q9Y5G0 923 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 CARNS1A5YM72 827 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 NPTXRO95502 500 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 DBTP11182 482 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 DLG4P78352 724 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 PTPRNQ16849 979 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 EPC2Q52LR7 807 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 AAGABQ6PD74 315 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 SPAG4Q9NPE6 437 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 NPHP3-ACAD11A0A0J9YXS1 232 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 TPD52L2O43399 206 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 TSPAN1O60635 241 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 DEF8Q6ZN54 512 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM98AQ8NCA5 519 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 RIT1Q92963 219 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 PCDHB12Q9Y5F1 795 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 NEDD4P46934 1319 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 C17orf102A2RUQ5 167 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 CBX4O00257 560 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 ADAM8P78325 824 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 MED22Q15528 200 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 LYPLAL1Q5VWZ2 237 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 RAB43Q86YS6 212 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 INTS10Q9NVR2 710 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 MLYCDO95822 493 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 THOP1P52888 689 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 RTL4Q6ZR62 310 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 NET1Q7Z628 596 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 NT5DC3Q86UY8 548 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 LDHDQ86WU2 507 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 PIH1D2Q8WWB5 315 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 SEC31BQ9NQW1 1179 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF639Q9UID6 485 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 GTF3C4Q9UKN8 822 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 OGDHLQ9ULD0 1010 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 COMMD3-BMI1R4GMX3 469 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 KCNA5P22460 613 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 ZC3H7AQ8IWR0 971 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 SFRP1Q8N474 314 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 BORCS5Q969J3 196 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 GRIN2AQ12879 1464 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 PAX3P23760 479 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 ATXN1P54253 815 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 SREBF2Q12772 1141 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 MTM1Q13496 603 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 PERM1Q5SV97 790 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms