RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeastyeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC42YLR229C UBP1P25037 809 aa5.48□□□□□ -1.53
CDC42YLR229C SSF1P38789 453 aaPredicted RBP5.48□□□□□ -1.53
CDC42YLR229C AIR1P40507 360 aaKnown RBP5.48□□□□□ -1.53
CDC42YLR229C CWC15Q03772 175 aaKnown RBP5.48□□□□□ -1.53
CDC42YLR229C LEU2P04173 364 aaPredicted RBP5.47□□□□□ -1.53
CDC42YLR229C TRK1P12685 1235 aa5.47□□□□□ -1.53
CDC42YLR229C YEF3P16521 1044 aaKnown RBP5.47□□□□□ -1.53
CDC42YLR229C FPR3P38911 411 aaKnown RBP5.46□□□□□ -1.54
CDC42YLR229C UTP7P40055 554 aaKnown RBP5.46□□□□□ -1.54
CDC42YLR229C VPS27P40343 622 aaKnown RBP5.46□□□□□ -1.54
CDC42YLR229C EAF7P53911 425 aaKnown RBP5.46□□□□□ -1.54
CDC42YLR229C CDC45Q08032 650 aa5.46□□□□□ -1.54
CDC42YLR229C YBL113CQ7M4S9 792 aa5.46□□□□□ -1.54
CDC42YLR229C TY1B-NL2Q99337 1749 aaKnown RBP5.45□□□□□ -1.54
CDC42YLR229C NGR1P32831 672 aaKnown RBP5.45□□□□□ -1.54
CDC42YLR229C STM1P39015 273 aaKnown RBP5.45□□□□□ -1.54
CDC42YLR229C SUM1P46676 1062 aa5.45□□□□□ -1.54
CDC42YLR229C MTR4P47047 1073 aaKnown RBP5.45□□□□□ -1.54
CDC42YLR229C FOX2Q02207 900 aaKnown RBP5.45□□□□□ -1.54
CDC42YLR229C TAP42Q04372 366 aa5.45□□□□□ -1.54
CDC42YLR229C YDL144CQ07589 356 aa5.45□□□□□ -1.54
CDC42YLR229C AHP1P38013 176 aaKnown RBP5.44□□□□□ -1.54
CDC42YLR229C GCR2Q01722 534 aa5.44□□□□□ -1.54
CDC42YLR229C NOP8Q08287 484 aaPredicted RBP5.44□□□□□ -1.54
CDC42YLR229C KAR2P16474 682 aaKnown RBP5.43□□□□□ -1.54
CDC42YLR229C SEC20P28791 383 aa5.43□□□□□ -1.54
CDC42YLR229C GRX4P32642 244 aa5.43□□□□□ -1.54
CDC42YLR229C GRS1P38088 690 aaKnown RBP5.43□□□□□ -1.54
CDC42YLR229C TPS3P38426 1054 aaKnown RBP5.43□□□□□ -1.54
CDC42YLR229C GLO3P38682 493 aaKnown RBP5.43□□□□□ -1.54
CDC42YLR229C AAD14P42884 376 aa5.43□□□□□ -1.54
CDC42YLR229C PTK2P47116 818 aaKnown RBP5.43□□□□□ -1.54
CDC42YLR229C MCM1P11746 286 aa5.42□□□□□ -1.54
CDC42YLR229C SCD5P34758 872 aa5.42□□□□□ -1.54
CDC42YLR229C YTA6P40328 754 aa5.42□□□□□ -1.54
CDC42YLR229C MPP10P47083 593 aaKnown RBP5.42□□□□□ -1.54
CDC42YLR229C PRP43P53131 767 aaKnown RBP5.42□□□□□ -1.54
CDC42YLR229C LSC2P53312 427 aa5.42□□□□□ -1.54
CDC42YLR229C RVB2Q12464 471 aaKnown RBP5.42□□□□□ -1.54
CDC42YLR229C CLC1P17891 233 aa5.41□□□□□ -1.54
CDC42YLR229C RTR1P40084 226 aaPredicted RBP5.41□□□□□ -1.54
CDC42YLR229C YJR115WP47152 169 aa5.41□□□□□ -1.54
CDC42YLR229C ATG1P53104 897 aa5.41□□□□□ -1.54
CDC42YLR229C RRP46P53256 223 aaPredicted RBP5.41□□□□□ -1.54
CDC42YLR229C PAP2P53632 584 aaKnown RBP5.41□□□□□ -1.54
CDC42YLR229C HIM1Q06674 414 aa5.41□□□□□ -1.54
CDC42YLR229C RPS24AP0CX31 135 aaKnown RBP5.4□□□□□ -1.54
CDC42YLR229C RPS24BP0CX32 135 aaKnown RBP5.4□□□□□ -1.54
CDC42YLR229C ERP5P38819 212 aa5.4□□□□□ -1.54
CDC42YLR229C YRB30P53107 440 aaPredicted RBP5.4□□□□□ -1.54
CDC42YLR229C YLR346CQ06139 101 aa5.4□□□□□ -1.54
CDC42YLR229C ADE6P38972 1358 aaKnown RBP5.4□□□□□ -1.55
CDC42YLR229C AUS1Q08409 1394 aa5.4□□□□□ -1.55
CDC42YLR229C USO1P25386 1790 aa5.39□□□□□ -1.55
CDC42YLR229C RPC31P17890 251 aa5.39□□□□□ -1.55
CDC42YLR229C SUI2P20459 304 aaKnown RBP5.39□□□□□ -1.55
CDC42YLR229C ISC10P32645 267 aa5.39□□□□□ -1.55
CDC42YLR229C DLD1P32891 587 aa5.39□□□□□ -1.55
CDC42YLR229C RGA1P39083 1007 aa5.39□□□□□ -1.55
CDC42YLR229C BOL3P39724 118 aa5.39□□□□□ -1.55
CDC42YLR229C QDR1P40475 563 aa5.39□□□□□ -1.55
CDC42YLR229C SPR3P41901 512 aa5.39□□□□□ -1.55
CDC42YLR229C THI12P42883 340 aa5.39□□□□□ -1.55
CDC42YLR229C THI5P43534 340 aa5.39□□□□□ -1.55
CDC42YLR229C NUP85P46673 744 aa5.39□□□□□ -1.55
CDC42YLR229C THI11P47183 340 aa5.39□□□□□ -1.55
CDC42YLR229C MSN5P52918 1224 aa5.39□□□□□ -1.55
CDC42YLR229C THI13Q07748 340 aa5.39□□□□□ -1.55
CDC42YLR229C SNF2P22082 1703 aa5.38□□□□□ -1.55
CDC42YLR229C PRD1P25375 712 aa5.38□□□□□ -1.55
CDC42YLR229C HEM3P28789 327 aa5.38□□□□□ -1.55
CDC42YLR229C ASF1P32447 279 aa5.38□□□□□ -1.55
CDC42YLR229C FUN12P39730 1002 aaKnown RBP5.38□□□□□ -1.55
CDC42YLR229C BRE2P43132 505 aa5.38□□□□□ -1.55
CDC42YLR229C SUV3P32580 737 aa5.37□□□□□ -1.55
CDC42YLR229C IME2P32581 645 aa5.37□□□□□ -1.55
CDC42YLR229C YBR197CP38306 217 aa5.37□□□□□ -1.55
CDC42YLR229C YHL050CP38721 697 aa5.37□□□□□ -1.55
CDC42YLR229C YHR219WP38900 624 aa5.37□□□□□ -1.55
CDC42YLR229C SAP155P43612 1002 aa5.37□□□□□ -1.55
CDC42YLR229C ACF4P47129 309 aa5.37□□□□□ -1.55
CDC42YLR229C YPQ2Q06328 317 aa5.37□□□□□ -1.55
CDC42YLR229C Q0182Q9ZZW1 134 aa5.37□□□□□ -1.55
CDC42YLR229C RPO41P13433 1351 aaKnown RBP5.37□□□□□ -1.55
CDC42YLR229C YBR287WP38355 427 aa5.36□□□□□ -1.55
CDC42YLR229C FIR1P40020 876 aa5.36□□□□□ -1.55
CDC42YLR229C JJJ2P46997 583 aa5.36□□□□□ -1.55
CDC42YLR229C UBP2Q01476 1272 aa5.36□□□□□ -1.55
CDC42YLR229C NAB6Q03735 1134 aaKnown RBP RIP-Chip data5.36□□□□□ -1.55not detected
CDC42YLR229C THI22Q06490 572 aa5.36□□□□□ -1.55
CDC42YLR229C UTP4Q06679 776 aaKnown RBP5.36□□□□□ -1.55
CDC42YLR229C MRPL33P20084 86 aa5.35□□□□□ -1.55
CDC42YLR229C TCB2P48231 1178 aa5.35□□□□□ -1.55
CDC42YLR229C UFD2P54860 961 aa5.35□□□□□ -1.55
CDC42YLR229C LSO1Q3E827 93 aa5.35□□□□□ -1.55
CDC42YLR229C TRL1P09880 827 aaKnown RBP5.34□□□□□ -1.55
CDC42YLR229C MLF3P32047 452 aa5.34□□□□□ -1.55
CDC42YLR229C DAL1P32375 460 aa5.34□□□□□ -1.55
CDC42YLR229C LDH1P38139 375 aa5.34□□□□□ -1.55
CDC42YLR229C DYS1P38791 387 aa5.34□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms